>NUP3_PENSQ (P24504) Nuclease PA3 (EC 3.1.3.6) (Endonuclease PA3)|
           (Deoxyribonuclease PA3)
          Length = 270

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 51/166 (30%), Positives = 85/166 (51%), Gaps = 8/166 (4%)
 Frame = -2

Query: 728 NLTEALLFLSHFMGDIHQPMHVGFTSDMGGNSVNLRWFKHKSNLHHVWDREIILTVLAER 549
           N  EAL FL HF+GD+ QP+H    + +GGN +N+ +  +  NLH  WD  +   ++   
Sbjct: 106 NHAEALRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGH 164

Query: 548 YGKDMAAFRKDLQHNITKGSWSDESSWKDCADLMSCP----TKYATESIGLAC----KWG 393
              D  ++ K L  NI  G+++ +++     D +S P    T++A+++  L C      G
Sbjct: 165 ALSDAESWAKTLVQNIESGNYTAQATGWIKGDNISEPITTATRWASDANALVCTVVMPHG 224

Query: 392 YDGVHDGDTLSEEYFASRLPIVTRRIAQGGVRLAMFLNRAFGDHKA 255
              +  GD L   Y+ S +  +  +IA+GG RLA ++N   G   A
Sbjct: 225 AAALQTGD-LYPTYYDSVIDTIELQIAKGGYRLANWINEIHGSEIA 269

>NUP1_PENCI (P24289) Nuclease P1 (EC 3.1.30.1) (Endonuclease P1)|
           (Deoxyribonuclease P1)
          Length = 270

 Score = 71.6 bits (174), Expect = 2e-12
 Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 8/166 (4%)
 Frame = -2

Query: 728 NLTEALLFLSHFMGDIHQPMHVGFTSDMGGNSVNLRWFKHKSNLHHVWDREIILTVLAER 549
           N  EAL FL HF+GD+ QP+H    + +GGN +N+ +  +  NLH  WD  +   ++   
Sbjct: 106 NHAEALRFLVHFIGDMTQPLHDEAYA-VGGNKINVTFDGYHDNLHSDWDTYMPQKLIGGH 164

Query: 548 YGKDMAAFRKDLQHNITKGSWSDES-SW---KDCADLMSCPTKYATESIGLAC----KWG 393
              D  ++ K L  NI  G+++ ++  W    + ++ ++  T++A+++  L C      G
Sbjct: 165 ALSDAESWAKTLVQNIESGNYTAQAIGWIKGDNISEPITTATRWASDANALVCTVVMPHG 224

Query: 392 YDGVHDGDTLSEEYFASRLPIVTRRIAQGGVRLAMFLNRAFGDHKA 255
              +  GD L   Y+ S +  +  +IA+GG RLA ++N   G   A
Sbjct: 225 AAALQTGD-LYPTYYDSVIDTIELQIAKGGYRLANWINEIHGSEIA 269

>NUS1_ASPOR (P24021) Nuclease S1 precursor (EC 3.1.30.1) (Endonuclease S1)|
           (Single-stranded-nucleate endonuclease)
           (Deoxyribonuclease S1)
          Length = 287

 Score = 64.7 bits (156), Expect = 3e-10
 Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 8/154 (5%)
 Frame = -2

Query: 716 ALLFLSHFMGDIHQPMHVGFTSDMGGNSVNLRWFKHKSNLHHVWDREIILTVLAERYGKD 537
           AL F+ H +GDIHQP+H     + GGN +++ +    +NLHH+WD   +    A  Y   
Sbjct: 129 ALKFVVHIIGDIHQPLH-DENLEAGGNGIDVTYDGETTNLHHIWDTN-MPEEAAGGYSLS 186

Query: 536 MAAFRKD-LQHNITKGSWSD-ESSWKDCADL---MSCPTKYATESIGLACKWGYD---GV 381
           +A    D L   I  G++S  + SW D  D+   +S    +A ++    C    D     
Sbjct: 187 VAKTYADLLTERIKTGTYSSKKDSWTDGIDIKDPVSTSMIWAADANTYVCSTVLDDGLAY 246

Query: 380 HDGDTLSEEYFASRLPIVTRRIAQGGVRLAMFLN 279
            +   LS EY+    P+    IA+ G RLA +L+
Sbjct: 247 INSTDLSGEYYDKSQPVFEELIAKAGYRLAAWLD 280

>GSTT3_DROME (Q9VG97) Glutathione S-transferase D3 (EC 2.5.1.18) (DmGST22)|
          Length = 199

 Score = 33.5 bits (75), Expect = 0.70
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -2

Query: 590 VWDREIILTVLAERYGKDMAAFRKDLQ 510
           +W+   IL  L E+YGKD A + KD+Q
Sbjct: 46  IWESRAILVYLVEKYGKDDALYPKDIQ 72

>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1852

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 715  PCYSCHTSWEIFTSPCMWGSRATWGATR*TYAGSST--SPTSTMYGTGR*YSPCSP 554
            P YS  +     TSP    +  T+  T  TY+ +S   SPTS  Y +G  YSP SP
Sbjct: 1666 PSYSPSSPRYSPTSPTYSPTSPTYSPTSPTYSPTSPTYSPTSPSYESGGGYSPSSP 1721

>RL3_LACLA (Q9CDW2) 50S ribosomal protein L3|
          Length = 207

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 270 EGPVEEHGQPHSPLRDPPRHDREPGS 347
           +GP++ HGQ   P+    R+ R PGS
Sbjct: 118 QGPIKRHGQSRGPMAHGSRYHRRPGS 143

>GSTT6_DROME (Q9VG94) Glutathione S-transferase D6 (EC 2.5.1.18) (DmGST25)|
          Length = 215

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 602 NLHHVWDREIILTVLAERYGKDMAAFRKDLQ 510
           NL  +W+   I+  L E+YGKD + + KD Q
Sbjct: 58  NLFVIWETRAIVVYLVEQYGKDDSLYPKDPQ 88

>FOXK2_HUMAN (Q01167) Forkhead box protein K2 (Interleukin enhancer-binding|
           factor 1) (Cellular transcription factor ILF-1)
          Length = 655

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 23/63 (36%), Positives = 27/63 (42%)
 Frame = +3

Query: 285 EHGQPHSPLRDPPRHDREPGSEIFLGQCVSVVDAVVAPLAGQPYALRCILGRAGHEVRAI 464
           EHG     L  PPR    PG     G    +  A   P AG  + LRC LG+ G  V  +
Sbjct: 63  EHGPLELHLPAPPRDLHAPGRRGHGGAAPELPPAQPRPDAGGDFYLRC-LGKNGVFVDGV 121

Query: 465 FPR 473
           F R
Sbjct: 122 FQR 124

>GSTT5_ANOGA (Q93112) Glutathione S-transferase 1-5 (EC 2.5.1.18) (GST|
           class-theta)
          Length = 209

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 590 VWDREIILTVLAERYGKDMAAFRKDLQ 510
           +W+   I T LAE+YGKD   + KD Q
Sbjct: 62  LWESRAICTYLAEKYGKDDKLYPKDPQ 88

>PGK_CHLTE (Q8KAE1) Phosphoglycerate kinase (EC 2.7.2.3)|
          Length = 397

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
 Frame = -2

Query: 467 KDCADLMSCPTKYATESIGLACKWGYDGVHDGDTLSEEYF------ASRLPIVTRRIAQG 306
           K  ++L+ CP   A + IG         + DGD L  E         +  P   R +A  
Sbjct: 79  KRLSELLDCPVTMAGDCIGTEVMQQVLALQDGDVLMLENLRFHPEEEANDPDFARELASL 138

Query: 305 GVRLAMFLNRAFGD-HKAHSSRD 240
           G    +++N AFG  H+AH+S +
Sbjct: 139 G---EIYVNDAFGTAHRAHASTE 158

>CBIO_BIFLO (Q8G838) Cobalt import ATP-binding/permease protein cbiO|
          Length = 780

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 201 IIMSDGQVHRRGDVAAAVRFVVSEGPVEEHGQPHSPLRDPPR-HDREPGSEI 353
           II     V  R  +A AV    +EG +     P  P  D PR  +RE GSE+
Sbjct: 216 IIGITAAVDNRSPLAEAVSQSETEGSIGTEAAPSRPTNDSPRQREREDGSEL 267

>DXS_LISMO (Q8Y7C1) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 609

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 444 GHEVRAIFPR*LVGPRSFGDVVLEVLAEGGHVLAVA-LGEHGEYYLPVPYMVEVGLVLEP 620
           GH++  +     +  R+ G V+L ++ + G     A L   G ++   PY VE G  ++P
Sbjct: 227 GHDIEEVITNLELAKRAKGPVLLHIVTKKGKGYQPAELDSRGTWHGTGPYKVETGSFIKP 286

Query: 621 A 623
           A
Sbjct: 287 A 287

>DXS_LISMF (Q71ZV7) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)|
           (1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
           (DXPS)
          Length = 609

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
 Frame = +3

Query: 444 GHEVRAIFPR*LVGPRSFGDVVLEVLAEGGHVLAVA-LGEHGEYYLPVPYMVEVGLVLEP 620
           GH++  +     +  R+ G V+L ++ + G     A L   G ++   PY VE G  ++P
Sbjct: 227 GHDIEEVITNLELAKRTKGPVLLHIVTKKGKGYQPAELDSRGTWHGTGPYKVETGSFIKP 286

Query: 621 A 623
           A
Sbjct: 287 A 287


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,127,694
Number of Sequences: 219361
Number of extensions: 2186179
Number of successful extensions: 7622
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7616
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7649585595
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)