ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3i01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK099573.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 2e-32
2dbj|AK061848.1| Oryza sativa (japonica cultivar-group) cDNA clon... 149 2e-32
3ref|XM_474037.1| Oryza sativa (japonica cultivar-group), predic... 80 1e-11
4emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4,... 80 1e-11
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
6emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 80 1e-11
7gb|AF082031.1|AF082031 Hemerocallis hybrid cultivar senescence-a... 74 7e-10
8ref|NM_100991.2| Arabidopsis thaliana BFN1 (BIFUNCTIONAL NUCLEAS... 66 2e-07
9gb|AY079368.1| Arabidopsis thaliana putative bifunctional nuclea... 66 2e-07
10gb|AY040016.1| Arabidopsis thaliana putative bifunctional nuclea... 66 2e-07
11emb|BX817385.1|CNS0ACJE Arabidopsis thaliana Full-length cDNA Co... 66 2e-07
12gb|AY088393.1| Arabidopsis thaliana clone 643 mRNA, complete seq... 66 2e-07
13gb|U90264.1|ATU90264 Arabidopsis thaliana bifunctional nuclease ... 66 2e-07
14emb|BX817076.1|CNS0AD7I Arabidopsis thaliana Full-length cDNA Co... 64 7e-07
15gb|AY676602.1| Lotus corniculatus var. japonicus endonuclease mR... 58 4e-05
16gb|AY986984.1| Dianthus caryophyllus cultivar Nora putative nucl... 58 4e-05
17gb|AY986985.1| Dianthus caryophyllus cultivar Light Pink Barbara... 54 7e-04
18gb|AF237958.1|AF237958 Apium graveolens CEL I mismatch endonucle... 54 7e-04
19gb|AF420010.1| Narcissus pseudonarcissus S1-type endonuclease mR... 46 0.16
20dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 46 0.16
21ref|NM_148368.1| Arabidopsis thaliana endonuclease/ nucleic acid... 44 0.65
22dbj|AB003131.1| Zinnia elegans mRNA for endonuclease, complete cds 44 0.65
23emb|BX548053.7| Zebrafish DNA sequence from clone DKEY-189G17 in... 42 2.5
24dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 42 2.5
25emb|AL974314.21| Zebrafish DNA sequence from clone DKEY-89P3 in ... 42 2.5
26gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 42 2.5 
>dbj|AK099573.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035J20, full
           insert sequence
          Length = 1220

 Score =  149 bits (75), Expect = 2e-32
 Identities = 144/167 (86%)
 Strand = Plus / Minus

                                                                       
Query: 565 gtgagtattatctccctgtcccatacatggtggaggttggacttgtgcttgaaccagcgt 624
           |||||||| |||||||| ||||| ||||| ||||| ||||| |||||| |||||||||||
Sbjct: 613 gtgagtatcatctccctatcccacacatgatggagattggatttgtgcctgaaccagcgt 554

                                                                       
Query: 625 aggttcaccgagttgccccccatgtcgctcgtgaaccccacatgcatgggctggtgaata 684
           || || | ||  ||||||||   ||||||||||||||| |||||||| ||||| |||| |
Sbjct: 553 agattaatcgtattgcccccttggtcgctcgtgaacccaacatgcattggctgatgaaca 494

                                                          
Query: 685 tctcccatgaagtgtgacaggaatagcagggcttccgtcaggttata 731
           ||||||||||||||||||| ||||||||| ||||| |||| ||||||
Sbjct: 493 tctcccatgaagtgtgacaagaatagcagtgcttcagtcatgttata 447



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                   
Query: 285 gaacatggccagcctcactcccccctgcgcgatccgccgcgtcacgatcgggagcc 340
           ||||||||||||||| ||||||||||||||||| || || ||||||||||||||||
Sbjct: 896 gaacatggccagcctaactcccccctgcgcgattcgtcgtgtcacgatcgggagcc 841
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>dbj|AK061848.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-F04, full
           insert sequence
          Length = 1241

 Score =  149 bits (75), Expect = 2e-32
 Identities = 144/167 (86%)
 Strand = Plus / Minus

                                                                       
Query: 565 gtgagtattatctccctgtcccatacatggtggaggttggacttgtgcttgaaccagcgt 624
           |||||||| |||||||| ||||| ||||| ||||| ||||| |||||| |||||||||||
Sbjct: 612 gtgagtatcatctccctatcccacacatgatggagattggatttgtgcctgaaccagcgt 553

                                                                       
Query: 625 aggttcaccgagttgccccccatgtcgctcgtgaaccccacatgcatgggctggtgaata 684
           || || | ||  ||||||||   ||||||||||||||| |||||||| ||||| |||| |
Sbjct: 552 agattaatcgtattgcccccttggtcgctcgtgaacccaacatgcattggctgatgaaca 493

                                                          
Query: 685 tctcccatgaagtgtgacaggaatagcagggcttccgtcaggttata 731
           ||||||||||||||||||| ||||||||| ||||| |||| ||||||
Sbjct: 492 tctcccatgaagtgtgacaagaatagcagtgcttcagtcatgttata 446



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                   
Query: 285 gaacatggccagcctcactcccccctgcgcgatccgccgcgtcacgatcgggagcc 340
           ||||||||||||||| ||||||||||||||||| || || ||||||||||||||||
Sbjct: 895 gaacatggccagcctaactcccccctgcgcgattcgtcgtgtcacgatcgggagcc 840
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>ref|XM_474037.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 759

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                   
Query: 285 gaacatggccagcctcactcccccctgcgcgatccgccgcgtcacgatcgggagcc 340
           ||||||||||||||| ||||||||||||||||| || || ||||||||||||||||
Sbjct: 708 gaacatggccagcctaactcccccctgcgcgattcgtcgtgtcacgatcgggagcc 653



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                
Query: 679 tgaatatctcccatgaagtgtgacaggaatagcagggcttccgtcaggttata 731
           |||| |||||||||||||||||||| ||||||||| ||||| |||| ||||||
Sbjct: 395 tgaacatctcccatgaagtgtgacaagaatagcagtgcttcagtcatgttata 343
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>emb|AL606657.4|OSJN00101 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0034I13,
             complete sequence
          Length = 123480

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 285   gaacatggccagcctcactcccccctgcgcgatccgccgcgtcacgatcgggagcc 340
             ||||||||||||||| ||||||||||||||||| || || ||||||||||||||||
Sbjct: 15398 gaacatggccagcctaactcccccctgcgcgattcgtcgtgtcacgatcgggagcc 15343



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                         
Query: 588   tacatggtggaggttggacttgtgcttgaaccagcgtaggttcaccgagttgccccccat 647
             |||||| ||||| ||||| |||||| ||||||||||||| || | ||  ||||||||   
Sbjct: 14695 tacatgatggagattggatttgtgcctgaaccagcgtagattaatcgtattgcccccttg 14636

                                            
Query: 648   gtcgctcgtgaaccccacatgcatgggctgg 678
             ||||||||||||||| |||||||| ||||||
Sbjct: 14635 gtcgctcgtgaacccaacatgcattggctgg 14605



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 679   tgaatatctcccatgaagtgtgacaggaatagcagggcttccgtcaggttat 730
             |||| |||||||||||||||||||| ||||||||| ||||| |||| |||||
Sbjct: 14517 tgaacatctcccatgaagtgtgacaagaatagcagtgcttcagtcatgttat 14466
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                        
Query: 285      gaacatggccagcctcactcccccctgcgcgatccgccgcgtcacgatcgggagcc 340
                ||||||||||||||| ||||||||||||||||| || || ||||||||||||||||
Sbjct: 32398597 gaacatggccagcctaactcccccctgcgcgattcgtcgtgtcacgatcgggagcc 32398542



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                            
Query: 588      tacatggtggaggttggacttgtgcttgaaccagcgtaggttcaccgagttgccccccat 647
                |||||| ||||| ||||| |||||| ||||||||||||| || | ||  ||||||||   
Sbjct: 32397894 tacatgatggagattggatttgtgcctgaaccagcgtagattaatcgtattgcccccttg 32397835

                                               
Query: 648      gtcgctcgtgaaccccacatgcatgggctgg 678
                ||||||||||||||| |||||||| ||||||
Sbjct: 32397834 gtcgctcgtgaacccaacatgcattggctgg 32397804



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                    
Query: 679      tgaatatctcccatgaagtgtgacaggaatagcagggcttccgtcaggttat 730
                |||| |||||||||||||||||||| ||||||||| ||||| |||| |||||
Sbjct: 32397716 tgaacatctcccatgaagtgtgacaagaatagcagtgcttcagtcatgttat 32397665
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>emb|AL512546.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0410G08, complete
             sequence
          Length = 63554

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 52/56 (92%)
 Strand = Plus / Minus

                                                                     
Query: 285   gaacatggccagcctcactcccccctgcgcgatccgccgcgtcacgatcgggagcc 340
             ||||||||||||||| ||||||||||||||||| || || ||||||||||||||||
Sbjct: 60094 gaacatggccagcctaactcccccctgcgcgattcgtcgtgtcacgatcgggagcc 60039



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 77/91 (84%)
 Strand = Plus / Minus

                                                                         
Query: 588   tacatggtggaggttggacttgtgcttgaaccagcgtaggttcaccgagttgccccccat 647
             |||||| ||||| ||||| |||||| ||||||||||||| || | ||  ||||||||   
Sbjct: 59391 tacatgatggagattggatttgtgcctgaaccagcgtagattaatcgtattgcccccttg 59332

                                            
Query: 648   gtcgctcgtgaaccccacatgcatgggctgg 678
             ||||||||||||||| |||||||| ||||||
Sbjct: 59331 gtcgctcgtgaacccaacatgcattggctgg 59301



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 47/52 (90%)
 Strand = Plus / Minus

                                                                 
Query: 679   tgaatatctcccatgaagtgtgacaggaatagcagggcttccgtcaggttat 730
             |||| |||||||||||||||||||| ||||||||| ||||| |||| |||||
Sbjct: 59213 tgaacatctcccatgaagtgtgacaagaatagcagtgcttcagtcatgttat 59162
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>gb|AF082031.1|AF082031 Hemerocallis hybrid cultivar senescence-associated protein 6 (SA6)
           mRNA, complete cds
          Length = 1129

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 49/53 (92%)
 Strand = Plus / Minus

                                                                
Query: 571 attatctccctgtcccatacatggtggaggttggacttgtgcttgaaccagcg 623
           ||||||||||| |||||||||||||| || |||||||||||| ||||||||||
Sbjct: 560 attatctccctatcccatacatggtgaagattggacttgtgcctgaaccagcg 508



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                          
Query: 667 tgcatgggctggtgaatatctcccatgaagtgtgacaggaatagcag 713
           ||||| ||||| || |||||||||||||| || |||||||| |||||
Sbjct: 464 tgcattggctgatggatatctcccatgaaatgggacaggaagagcag 418
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>ref|NM_100991.2| Arabidopsis thaliana BFN1 (BIFUNCTIONAL NUCLEASE I); nucleic acid
           binding AT1G11190 (BFN1) mRNA, complete cds
          Length = 1274

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                       
Query: 655 gtgaaccccacatgcatgggctggtgaatatctcccatgaagtgtgacaggaatagcagg 714
           ||||| ||||||||||| ||||| ||||||||||||||||| || |||| ||| |  |||
Sbjct: 575 gtgaatcccacatgcatcggctgatgaatatctcccatgaaatgagacaagaacaaaagg 516

                            
Query: 715 gcttccgtcaggttata 731
           ||||| |||| ||||||
Sbjct: 515 gcttcggtcatgttata 499
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>gb|AY079368.1| Arabidopsis thaliana putative bifunctional nuclease bfn1
           (At1g11190) mRNA, complete cds
          Length = 949

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                       
Query: 655 gtgaaccccacatgcatgggctggtgaatatctcccatgaagtgtgacaggaatagcagg 714
           ||||| ||||||||||| ||||| ||||||||||||||||| || |||| ||| |  |||
Sbjct: 491 gtgaatcccacatgcatcggctgatgaatatctcccatgaaatgagacaagaacaaaagg 432

                            
Query: 715 gcttccgtcaggttata 731
           ||||| |||| ||||||
Sbjct: 431 gcttcggtcatgttata 415
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>gb|AY040016.1| Arabidopsis thaliana putative bifunctional nuclease bfn1
           (At1g11190) mRNA, complete cds
          Length = 1291

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                       
Query: 655 gtgaaccccacatgcatgggctggtgaatatctcccatgaagtgtgacaggaatagcagg 714
           ||||| ||||||||||| ||||| ||||||||||||||||| || |||| ||| |  |||
Sbjct: 575 gtgaatcccacatgcatcggctgatgaatatctcccatgaaatgagacaagaacaaaagg 516

                            
Query: 715 gcttccgtcaggttata 731
           ||||| |||| ||||||
Sbjct: 515 gcttcggtcatgttata 499
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>emb|BX817385.1|CNS0ACJE Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL19ZF08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1067

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                       
Query: 655 gtgaaccccacatgcatgggctggtgaatatctcccatgaagtgtgacaggaatagcagg 714
           ||||| ||||||||||| ||||| ||||||||||||||||| || |||| ||| |  |||
Sbjct: 560 gtgaatcccacatgcatcggctgatgaatatctcccatgaaatgagacaagaacaaaagg 501

                            
Query: 715 gcttccgtcaggttata 731
           ||||| |||| ||||||
Sbjct: 500 gcttcggtcatgttata 484
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>gb|AY088393.1| Arabidopsis thaliana clone 643 mRNA, complete sequence
          Length = 1199

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                       
Query: 655 gtgaaccccacatgcatgggctggtgaatatctcccatgaagtgtgacaggaatagcagg 714
           ||||| ||||||||||| ||||| ||||||||||||||||| || |||| ||| |  |||
Sbjct: 575 gtgaatcccacatgcatcggctgatgaatatctcccatgaaatgagacaagaacaaaagg 516

                            
Query: 715 gcttccgtcaggttata 731
           ||||| |||| ||||||
Sbjct: 515 gcttcggtcatgttata 499
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>gb|U90264.1|ATU90264 Arabidopsis thaliana bifunctional nuclease bfn1 (bfn1) gene,
           complete cds
          Length = 1181

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                       
Query: 655 gtgaaccccacatgcatgggctggtgaatatctcccatgaagtgtgacaggaatagcagg 714
           ||||| ||||||||||| ||||| ||||||||||||||||| || |||| ||| |  |||
Sbjct: 542 gtgaatcccacatgcatcggctgatgaatatctcccatgaaatgagacaagaacaaaagg 483

                            
Query: 715 gcttccgtcaggttata 731
           ||||| |||| ||||||
Sbjct: 482 gcttcggtcatgttata 466
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>emb|BX817076.1|CNS0AD7I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH84ZD05 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 701

 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                       
Query: 655 gtgaaccccacatgcatgggctggtgaatatctcccatgaagtgtgacaggaatagcagg 714
           ||||| ||||||||||| ||||| ||||||||||||||||| || |||| ||| |  |||
Sbjct: 76  gtgaatcccacatgcatcggctgatgaatatctcccatgaaatgagacaagaacaaaagg 17

                           
Query: 715 gcttccgtcaggttat 730
           ||||| |||| |||||
Sbjct: 16  gcttcggtcatgttat 1
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>gb|AY676602.1| Lotus corniculatus var. japonicus endonuclease mRNA, partial cds
          Length = 421

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 44/49 (89%)
 Strand = Plus / Minus

                                                            
Query: 655 gtgaaccccacatgcatgggctggtgaatatctcccatgaagtgtgaca 703
           ||||| || |||||||| |||||||| | ||||||||||||||||||||
Sbjct: 56  gtgaatccaacatgcataggctggtgtacatctcccatgaagtgtgaca 8
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>gb|AY986984.1| Dianthus caryophyllus cultivar Nora putative nuclease mRNA, partial
           cds
          Length = 790

 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                
Query: 667 tgcatgggctggtgaatatctcccatgaagtgtgaca 703
           ||||| ||||||||||||||||||||||| |||||||
Sbjct: 432 tgcattggctggtgaatatctcccatgaaatgtgaca 396
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>gb|AY986985.1| Dianthus caryophyllus cultivar Light Pink Barbara putative nuclease
           mRNA, partial cds
          Length = 657

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 667 tgcatgggctggtgaatatctcccatgaagtgtga 701
           ||||| ||||||||||||||||||||||| |||||
Sbjct: 266 tgcattggctggtgaatatctcccatgaaatgtga 232
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>gb|AF237958.1|AF237958 Apium graveolens CEL I mismatch endonuclease mRNA, complete cds
          Length = 1098

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 664 acatgcatgggctggtgaatatctcccatgaagtg 698
           |||||||| ||||| ||||||||||||||||||||
Sbjct: 591 acatgcataggctgatgaatatctcccatgaagtg 557
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>gb|AF420010.1| Narcissus pseudonarcissus S1-type endonuclease mRNA, partial cds
          Length = 409

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                              
Query: 667 tgcatgggctggtgaatatctcccatgaagtgtga 701
           ||||| ||||| || ||||||||||||||||||||
Sbjct: 359 tgcattggctgatggatatctcccatgaagtgtga 325
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 542     tgccgtagcgctcggcgagcacggtga 568
               |||||||||||| ||||||||||||||
Sbjct: 2887607 tgccgtagcgctgggcgagcacggtga 2887581
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>ref|NM_148368.1| Arabidopsis thaliana endonuclease/ nucleic acid binding AT4G21585
           mRNA, complete cds
          Length = 900

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 664 acatgcatgggctggtgaatatctcc 689
           ||||||| ||||||||||||||||||
Sbjct: 473 acatgcaagggctggtgaatatctcc 448
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>dbj|AB003131.1| Zinnia elegans mRNA for endonuclease, complete cds
          Length = 1104

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 571 attatctccctgtcccatacatggtggaggttggacttgtgcttgaacca 620
           |||||||| || |||||||||||||| |  |||||||| ||| |||||||
Sbjct: 572 attatctctctatcccatacatggtgcaaattggacttatgcctgaacca 523
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>emb|BX548053.7| Zebrafish DNA sequence from clone DKEY-189G17 in linkage group 9,
              complete sequence
          Length = 210830

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 23     atccaacaaatgtctgcatct 43
              |||||||||||||||||||||
Sbjct: 205833 atccaacaaatgtctgcatct 205853
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 543     gccgtagcgctcggcgagcac 563
               |||||||||||||||||||||
Sbjct: 2741094 gccgtagcgctcggcgagcac 2741074
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>emb|AL974314.21| Zebrafish DNA sequence from clone DKEY-89P3 in linkage group 9, complete
              sequence
          Length = 192510

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 23     atccaacaaatgtctgcatct 43
              |||||||||||||||||||||
Sbjct: 148601 atccaacaaatgtctgcatct 148581
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                    
Query: 663     cacatgcatgggctggtgaatatctcccatgaagtgt 699
               |||||||| ||||||||||||||| || || ||||||
Sbjct: 4061482 cacatgcaagggctggtgaatatcgccaataaagtgt 4061518


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,028,094
Number of Sequences: 3902068
Number of extensions: 5028094
Number of successful extensions: 81358
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81004
Number of HSP's gapped (non-prelim): 354
length of query: 735
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 712
effective length of database: 17,143,297,704
effective search space: 12206027965248
effective search space used: 12206027965248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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