>FLIK_ECOLI (P52614) Flagellar hook-length control protein|
          Length = 375

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -2

Query: 464 STVVPTDLATAF--VTGNEWSVLSGDPRPATPTNLLTPTSAANQSMKD*TCLPAEMLSS 294
           STV+PT+  T F  +T  + +    D  P TP   LTP  A  QS  +    P+ + ++
Sbjct: 152 STVLPTEKPTLFTKLTSEQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTAA 210

>AXHA_ASPTU (P79021) Alpha-L-arabinofuranosidase precursor (EC 3.2.1.55)|
           (Arabinoxylan arabinofuranohydrolase)
          Length = 332

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -2

Query: 551 TNKSTDSGTKDFATNVEPGGGKHFFAVKSSTVVPTDLATAFVTGNEWSVLSGDPRPATPT 372
           T KS  +  KDF   V  G  KH     ++       +  F   +EWS ++   + ATP 
Sbjct: 44  TPKSGWTALKDFTDVVSDG--KHIVYASTTDEAGNYGSMTFGAFSEWSNMASASQTATPF 101

Query: 371 NLLTPT 354
           N + PT
Sbjct: 102 NAVAPT 107

>PRP5_ASPOR (Q2U2J6) Pre-mRNA-processing ATP-dependent RNA helicase prp5 (EC|
           3.6.1.-)
          Length = 1186

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = +2

Query: 221 ASRTRTGFPSTLANVSKTKPRSS*TN*ASQLAGKFNLSCFGLQLK*A--SANLSEWQALG 394
           +++T   FPST   V   KP S+ ++ AS L  K N+  FGL  K A  +   S  + LG
Sbjct: 271 SAKTSATFPSTKTEVQANKP-SATSSKASSLKVKGNVGSFGLGTKQAADTEKASATKTLG 329

Query: 395 HH*GQTTR 418
               ++TR
Sbjct: 330 FGEEESTR 337


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,885,562
Number of Sequences: 219361
Number of extensions: 1561625
Number of successful extensions: 4307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4305
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)