Clone Information

BLAST Search Result

Clone Name	rbaal3g21
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_472545.1\| Oryza sativa (japonica cultivar-group), predic...	333	4e-88
2	dbj\|AK101973.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	333	4e-88
3	emb\|AL606458.5\| Oryza sativa genomic DNA, chromosome 4, BAC clon...	246	7e-62
4	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	246	7e-62
5	gb\|AY110636.1\| Zea mays CL4177_1 mRNA sequence	240	4e-60
6	dbj\|AK105181.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	107	4e-20
7	ref\|XM_466685.1\| Oryza sativa (japonica cultivar-group), mRNA	56	1e-04
8	gb\|AC146272.3\| Pan troglodytes BAC clone RP43-29H6 from 7, compl...	44	0.54
9	gb\|AC142352.1\| Pan troglodytes BAC clone RP43-21K18 from 7, comp...	44	0.54
10	gb\|AC087069.3\| Homo sapiens chromosome 7 clone RP11-7P19, comple...	44	0.54
11	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.54
12	dbj\|AP005286.3\| Oryza sativa (japonica cultivar-group) genomic D...	44	0.54
13	gb\|AY105803.1\| Zea mays PCO143734 mRNA sequence	44	0.54
14	gb\|AC138381.10\| Mus musculus chromosome 6, clone RP24-328J8, com...	42	2.1
15	gb\|AC109296.16\| Mus musculus chromosome 1, clone RP24-240J15, co...	40	8.4
16	gb\|AC121143.12\| Mus musculus chromosome 1, clone RP24-177B16, co...	40	8.4
17	ref\|NM_103325.1\| Arabidopsis thaliana adenyl-nucleotide exchange...	40	8.4
18	ref\|NM_179420.1\| Arabidopsis thaliana adenyl-nucleotide exchange...	40	8.4
19	gb\|AC163295.2\| Mus musculus BAC clone RP23-132K20 from chromosom...	40	8.4
20	gb\|AC137679.11\| Mus musculus chromosome 12, clone RP23-302N13, c...	40	8.4
21	gb\|AC125331.4\| Mus musculus chromosome 7 clone RP23-11L1, comple...	40	8.4
22	gb\|AC122802.2\| Mus musculus BAC clone RP24-136N24 from 6, comple...	40	8.4
23	emb\|BX957326.8\| Zebrafish DNA sequence from clone DKEY-31B16 in ...	40	8.4
24	emb\|Z93928.1\|HS127B14 Human DNA sequence from clone RP1-127B14 o...	40	8.4
25	emb\|Z82189.1\|HS170A21 Human DNA sequence from clone RP1-170A21 o...	40	8.4
26	gb\|AE014818.1\| Plasmodium falciparum 3D7 chromosome 14 section 3...	40	8.4
27	gb\|AY117176.1\| Arabidopsis thaliana putative heat shock protein ...	40	8.4
28	gb\|AY065397.1\| Arabidopsis thaliana putative heat shock protein ...	40	8.4
29	gb\|AC005013.3\| Homo sapiens BAC clone GS1-165L15 from 7, complet...	40	8.4
30	emb\|BX571977.7\| Zebrafish DNA sequence from clone DKEY-9E15, com...	40	8.4
31	gb\|AC157557.5\| Mus musculus chromosome 7, clone RP24-369M22, com...	40	8.4
32	emb\|BX814493.1\|CNS0AAR9 Arabidopsis thaliana Full-length cDNA Co...	40	8.4
33	gb\|AC097455.3\| Homo sapiens BAC clone RP11-2J13 from 4, complete...	40	8.4
34	gb\|AC021199.7\|AC021199 Arabidopsis thaliana chromosome 1 BAC F7F...	40	8.4
35	gb\|AY088050.1\| Arabidopsis thaliana clone 40701 mRNA, complete s...	40	8.4
36	emb\|AL953894.5\| Zebrafish DNA sequence from clone CH211-212B13 i...	40	8.4
37	emb\|AL845477.8\| Mouse DNA sequence from clone RP23-206J10 on chr...	40	8.4

>ref|XM_472545.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 873

 Score =  333 bits (168), Expect = 4e-88
 Identities = 394/468 (84%), Gaps = 1/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 127 tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 186
           ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 873 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 814

                                                                       
Query: 187 gttttggtcaccagggccggtggagaccttcactgcggcaggccttagcaccctctccct 246
            |  |||   |||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct: 813 ctcctgggtgccagagccggttgagaccttcacagtggcaggccttagcagcctctccct 754

                                                                       
Query: 247 cagaaggaaccctcggtggacttcgtgtgagacgatccctgccttgaattctgtggattc 306
            ||||||||||| || | |||||| || ||||| ||||| |||||||| |     |||||
Sbjct: 753 tagaaggaacccgcgtttgacttcatgcgagacaatcccagccttgaactgatgagattc 694

                                                                       
Query: 307 ttcacgcgcgatagcctcatgaaccactggatcaaatggcttgccaacagtttccacaac 366
            || || |||||||||||||||| |   |||||||||||||||||||| |||||||||||
Sbjct: 693 ctcgcgtgcgatagcctcatgaatcgaaggatcaaatggcttgccaactgtttccacaac 634

                                                                       
Query: 367 ccctacacctaagcttttcagtgtttctactaattgcttgtatatgccttgatagcttgt 426
            ||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct: 633 tcctacacctaagcttctcaatgtctctactaactgcttgtatatgccttgatagcttgt 574

                                                                       
Query: 427 gctaatcttctgctctttctcagtctctagtgtgacctctacatttgttttctcgaagct 486
           ||||||| |||||||||| ||||||||  | |||| ||||  |||    ||||| || ||
Sbjct: 573 gctaatcgtctgctctttatcagtctccggggtgatctcttgattcaccttctcaaaact 514

                                                                       
Query: 487 atcaaccagaggtaacagactctgtacaagttccacttgtatatttcgatgtaaactttg 546
           |||||||||||  || |||||||| ||||  ||||| ||||||||| || |||||| | |
Sbjct: 513 atcaaccagagtcaatagactctgaacaacatccacctgtatattt-gaggtaaacctag 455

                                                           
Query: 547 cacggtccttttcagtctgcttccggaaattctctagatcagcattta 594
           |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 454 cacgctccttttcagtctgcttccggaaattctccagatcagcattta 407

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>dbj|AK101973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076N12, full
           insert sequence
          Length = 1180

 Score =  333 bits (168), Expect = 4e-88
 Identities = 394/468 (84%), Gaps = 1/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 127 tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 186
           ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 971 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 912

                                                                       
Query: 187 gttttggtcaccagggccggtggagaccttcactgcggcaggccttagcaccctctccct 246
            |  |||   |||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct: 911 ctcctgggtgccagagccggttgagaccttcacagtggcaggccttagcagcctctccct 852

                                                                       
Query: 247 cagaaggaaccctcggtggacttcgtgtgagacgatccctgccttgaattctgtggattc 306
            ||||||||||| || | |||||| || ||||| ||||| |||||||| |     |||||
Sbjct: 851 tagaaggaacccgcgtttgacttcatgcgagacaatcccagccttgaactgatgagattc 792

                                                                       
Query: 307 ttcacgcgcgatagcctcatgaaccactggatcaaatggcttgccaacagtttccacaac 366
            || || |||||||||||||||| |   |||||||||||||||||||| |||||||||||
Sbjct: 791 ctcgcgtgcgatagcctcatgaatcgaaggatcaaatggcttgccaactgtttccacaac 732

                                                                       
Query: 367 ccctacacctaagcttttcagtgtttctactaattgcttgtatatgccttgatagcttgt 426
            ||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||
Sbjct: 731 tcctacacctaagcttctcaatgtctctactaactgcttgtatatgccttgatagcttgt 672

                                                                       
Query: 427 gctaatcttctgctctttctcagtctctagtgtgacctctacatttgttttctcgaagct 486
           ||||||| |||||||||| ||||||||  | |||| ||||  |||    ||||| || ||
Sbjct: 671 gctaatcgtctgctctttatcagtctccggggtgatctcttgattcaccttctcaaaact 612

                                                                       
Query: 487 atcaaccagaggtaacagactctgtacaagttccacttgtatatttcgatgtaaactttg 546
           |||||||||||  || |||||||| ||||  ||||| ||||||||| || |||||| | |
Sbjct: 611 atcaaccagagtcaatagactctgaacaacatccacctgtatattt-gaggtaaacctag 553

                                                           
Query: 547 cacggtccttttcagtctgcttccggaaattctctagatcagcattta 594
           |||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 552 cacgctccttttcagtctgcttccggaaattctccagatcagcattta 505



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 75   gagctcccaaacaatggtgctctagcta 102
            ||||||||||| ||||||||||||||||
Sbjct: 1062 gagctcccaaagaatggtgctctagcta 1035

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>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10,
             complete sequence
          Length = 144811

 Score =  246 bits (124), Expect = 7e-62
 Identities = 227/260 (87%), Gaps = 1/260 (0%)
 Strand = Plus / Plus

                                                                         
Query: 335   ggatcaaatggcttgccaacagtttccacaacccctacacctaagcttttcagtgtttct 394
             |||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||
Sbjct: 36084 ggatcaaatggcttgccaactgtttccacaactcctacacctaagcttctcaatgtctct 36143

                                                                         
Query: 395   actaattgcttgtatatgccttgatagcttgtgctaatcttctgctctttctcagtctct 454
             ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| 
Sbjct: 36144 actaactgcttgtatatgccttgatagcttgtgctaatcgtctgctctttatcagtctcc 36203

                                                                         
Query: 455   agtgtgacctctacatttgttttctcgaagctatcaaccagaggtaacagactctgtaca 514
              | |||| ||||  |||    ||||| || |||||||||||||  || |||||||| |||
Sbjct: 36204 ggggtgatctcttgattcaccttctcaaaactatcaaccagagtcaatagactctgaaca 36263

                                                                         
Query: 515   agttccacttgtatatttcgatgtaaactttgcacggtccttttcagtctgcttccggaa 574
             |  ||||| ||||||||| || |||||| | ||||| |||||||||||||||||||||||
Sbjct: 36264 acatccacctgtatattt-gaggtaaacctagcacgctccttttcagtctgcttccggaa 36322

                                 
Query: 575   attctctagatcagcattta 594
             |||||| |||||||||||||
Sbjct: 36323 attctccagatcagcattta 36342



 Score =  111 bits (56), Expect = 3e-21
 Identities = 140/168 (83%)
 Strand = Plus / Plus

                                                                         
Query: 127   tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 186
             ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 35644 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 35703

                                                                         
Query: 187   gttttggtcaccagggccggtggagaccttcactgcggcaggccttagcaccctctccct 246
              |  |||   |||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct: 35704 ctcctgggtgccagagccggttgagaccttcacagtggcaggccttagcagcctctccct 35763

                                                             
Query: 247   cagaaggaaccctcggtggacttcgtgtgagacgatccctgccttgaa 294
              ||||||||||| || | |||||| || ||||| ||||| ||||||||
Sbjct: 35764 tagaaggaacccgcgtttgacttcatgcgagacaatcccagccttgaa 35811



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 75    gagctcccaaacaatggtgctctagcta 102
             ||||||||||| ||||||||||||||||
Sbjct: 35553 gagctcccaaagaatggtgctctagcta 35580

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  246 bits (124), Expect = 7e-62
 Identities = 227/260 (87%), Gaps = 1/260 (0%)
 Strand = Plus / Plus

                                                                            
Query: 335      ggatcaaatggcttgccaacagtttccacaacccctacacctaagcttttcagtgtttct 394
                |||||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||| |||
Sbjct: 21386334 ggatcaaatggcttgccaactgtttccacaactcctacacctaagcttctcaatgtctct 21386393

                                                                            
Query: 395      actaattgcttgtatatgccttgatagcttgtgctaatcttctgctctttctcagtctct 454
                ||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||| 
Sbjct: 21386394 actaactgcttgtatatgccttgatagcttgtgctaatcgtctgctctttatcagtctcc 21386453

                                                                            
Query: 455      agtgtgacctctacatttgttttctcgaagctatcaaccagaggtaacagactctgtaca 514
                 | |||| ||||  |||    ||||| || |||||||||||||  || |||||||| |||
Sbjct: 21386454 ggggtgatctcttgattcaccttctcaaaactatcaaccagagtcaatagactctgaaca 21386513

                                                                            
Query: 515      agttccacttgtatatttcgatgtaaactttgcacggtccttttcagtctgcttccggaa 574
                |  ||||| ||||||||| || |||||| | ||||| |||||||||||||||||||||||
Sbjct: 21386514 acatccacctgtatattt-gaggtaaacctagcacgctccttttcagtctgcttccggaa 21386572

                                    
Query: 575      attctctagatcagcattta 594
                |||||| |||||||||||||
Sbjct: 21386573 attctccagatcagcattta 21386592



 Score =  111 bits (56), Expect = 3e-21
 Identities = 140/168 (83%)
 Strand = Plus / Plus

                                                                            
Query: 127      tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 186
                ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 21385894 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 21385953

                                                                            
Query: 187      gttttggtcaccagggccggtggagaccttcactgcggcaggccttagcaccctctccct 246
                 |  |||   |||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct: 21385954 ctcctgggtgccagagccggttgagaccttcacagtggcaggccttagcagcctctccct 21386013

                                                                
Query: 247      cagaaggaaccctcggtggacttcgtgtgagacgatccctgccttgaa 294
                 ||||||||||| || | |||||| || ||||| ||||| ||||||||
Sbjct: 21386014 tagaaggaacccgcgtttgacttcatgcgagacaatcccagccttgaa 21386061



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                            
Query: 75       gagctcccaaacaatggtgctctagcta 102
                ||||||||||| ||||||||||||||||
Sbjct: 21385803 gagctcccaaagaatggtgctctagcta 21385830

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>gb|AY110636.1| Zea mays CL4177_1 mRNA sequence
          Length = 1088

 Score =  240 bits (121), Expect = 4e-60
 Identities = 236/273 (86%), Gaps = 1/273 (0%)
 Strand = Plus / Minus

                                                                       
Query: 335 ggatcaaatggcttgccaacagtttccacaacccctacacctaagcttttcagtgtttct 394
           |||||||||||||||||||| ||||||||| |  | ||||| ||   | | |||||||| 
Sbjct: 683 ggatcaaatggcttgccaactgtttccacagcttccacacccaaatatcttagtgtttca 624

                                                                       
Query: 395 actaattgcttgtatatgccttgatagcttgtgctaatcttctgctctttctcagtctct 454
           ||||| ||||||||||||||||||||||||| ||| ||||| ||||| ||||||||||||
Sbjct: 623 actaactgcttgtatatgccttgatagcttgcgctgatcttttgctccttctcagtctct 564

                                                                       
Query: 455 agtgtgacctctacatttgttttctcgaagctatcaaccagaggtaacagactctgtaca 514
            | |||  ||||| |||| ||||||| || |||||||| ||||||||||||||||| |||
Sbjct: 563 ggggtgttctctagatttattttctcaaaactatcaactagaggtaacagactctgaaca 504

                                                                       
Query: 515 agttccacttgtatatttcgatgtaaactttgcacggtccttttcagtctgcttccggaa 574
           | ||||||  |||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct: 503 acttccacccgtatattt-gatgttaactttgcacggtccttttcagtctgtttccggaa 445

                                            
Query: 575 attctctagatcagcatttaagcgaagaaactt 607
           |||||| || || ||||||||||||| ||||||
Sbjct: 444 attctccaggtcggcatttaagcgaataaactt 412



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 52/61 (85%)
 Strand = Plus / Minus

                                                                       
Query: 209 gagaccttcactgcggcaggccttagcaccctctccctcagaaggaaccctcggtggact 268
           ||||||||||| |  ||||||||||||| ||||||| ||| | ||||||||| | |||||
Sbjct: 809 gagaccttcacagtagcaggccttagcagcctctccttcaaatggaaccctctgcggact 750

            
Query: 269 t 269
           |
Sbjct: 749 t 749

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>dbj|AK105181.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G08, full
           insert sequence
          Length = 375

 Score =  107 bits (54), Expect = 4e-20
 Identities = 138/166 (83%)
 Strand = Plus / Minus

                                                                       
Query: 127 tcagacagcagcatcctctttagtatcctccacaggctcctccgaagttgtggagctcgt 186
           ||||||||| ||||| |||||  ||||||||||||||| ||| | || || |||||||||
Sbjct: 166 tcagacagcggcatcttctttgctatcctccacaggcttctctgtagatggggagctcgt 107

                                                                       
Query: 187 gttttggtcaccagggccggtggagaccttcactgcggcaggccttagcaccctctccct 246
            |  |||   |||| |||||| ||||||||||| | |||||||||||||| |||||||||
Sbjct: 106 ctcctgggtgccagagccggttgagaccttcacagtggcaggccttagcagcctctccct 47

                                                         
Query: 247 cagaaggaaccctcggtggacttcgtgtgagacgatccctgccttg 292
            ||||||||||| || | |||||| || ||||| ||||| ||||||
Sbjct: 46  tagaaggaacccgcgtttgacttcatgcgagacaatcccagccttg 1



 Score = 48.1 bits (24), Expect = 0.034
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 75  gagctcccaaacaatggtgctctagcta 102
           ||||||||||| ||||||||||||||||
Sbjct: 257 gagctcccaaagaatggtgctctagcta 230

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>ref|XM_466685.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 999

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 43/48 (89%)
 Strand = Plus / Minus

                                                           
Query: 317 atagcctcatgaaccactggatcaaatggcttgccaacagtttccaca 364
           ||||||||||||| ||  ||||||||||| ||||||||||| ||||||
Sbjct: 770 atagcctcatgaagcataggatcaaatggtttgccaacagtctccaca 723

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>gb|AC146272.3| Pan troglodytes BAC clone RP43-29H6 from 7, complete sequence
          Length = 149408

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 70    aaacagagctcccaaacaatgg 91
             ||||||||||||||||||||||
Sbjct: 70767 aaacagagctcccaaacaatgg 70746

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>gb|AC142352.1| Pan troglodytes BAC clone RP43-21K18 from 7, complete sequence
          Length = 171165

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 70    aaacagagctcccaaacaatgg 91
             ||||||||||||||||||||||
Sbjct: 93183 aaacagagctcccaaacaatgg 93162

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>gb|AC087069.3| Homo sapiens chromosome 7 clone RP11-7P19, complete sequence
          Length = 159620

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 70    aaacagagctcccaaacaatgg 91
             ||||||||||||||||||||||
Sbjct: 77391 aaacagagctcccaaacaatgg 77370

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 335      ggatcaaatggcttgccaacagtttccaca 364
                ||||||||||| ||||||||||| ||||||
Sbjct: 24112846 ggatcaaatggtttgccaacagtctccaca 24112817

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>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1004_A05
          Length = 174290

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 335   ggatcaaatggcttgccaacagtttccaca 364
             ||||||||||| ||||||||||| ||||||
Sbjct: 71587 ggatcaaatggtttgccaacagtctccaca 71558

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>gb|AY105803.1| Zea mays PCO143734 mRNA sequence
          Length = 1421

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 335 ggatcaaatggcttgccaacagtttc 360
           ||||||||||| ||||||||||||||
Sbjct: 858 ggatcaaatggtttgccaacagtttc 833

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>gb|AC138381.10| Mus musculus chromosome 6, clone RP24-328J8, complete sequence
          Length = 130895

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 378    agcttttcagtgtttctacta 398
              |||||||||||||||||||||
Sbjct: 101661 agcttttcagtgtttctacta 101641

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>gb|AC109296.16| Mus musculus chromosome 1, clone RP24-240J15, complete sequence
          Length = 161257

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 347    ttgccaacagtttccacaacccct 370
              ||||||||||| ||||||||||||
Sbjct: 143021 ttgccaacagtctccacaacccct 142998

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>gb|AC121143.12| Mus musculus chromosome 1, clone RP24-177B16, complete sequence
          Length = 176008

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 347   ttgccaacagtttccacaacccct 370
             ||||||||||| ||||||||||||
Sbjct: 29381 ttgccaacagtctccacaacccct 29358

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>ref|NM_103325.1| Arabidopsis thaliana adenyl-nucleotide exchange factor/ chaperone
           binding / protein homodimerization AT1G36390 transcript
           variant AT1G36390.1 mRNA, complete cds
          Length = 1027

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 335 ggatcaaatggcttgccaacagtt 358
           |||||||| |||||||||||||||
Sbjct: 700 ggatcaaaaggcttgccaacagtt 677

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>ref|NM_179420.1| Arabidopsis thaliana adenyl-nucleotide exchange factor/ chaperone
           binding / protein homodimerization AT1G36390 transcript
           variant AT1G36390.2 mRNA, complete cds
          Length = 1101

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 335 ggatcaaatggcttgccaacagtt 358
           |||||||| |||||||||||||||
Sbjct: 699 ggatcaaaaggcttgccaacagtt 676

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>gb|AC163295.2| Mus musculus BAC clone RP23-132K20 from chromosome 14, complete
             sequence
          Length = 212576

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 361   cacaacccctacacctaagc 380
             ||||||||||||||||||||
Sbjct: 62559 cacaacccctacacctaagc 62578

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>gb|AC137679.11| Mus musculus chromosome 12, clone RP23-302N13, complete sequence
          Length = 186273

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 526   tatatttcgatgtaaacttt 545
             ||||||||||||||||||||
Sbjct: 56673 tatatttcgatgtaaacttt 56692

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>gb|AC125331.4| Mus musculus chromosome 7 clone RP23-11L1, complete sequence
          Length = 255921

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 22     aaagggacccatttaaaatc 41
              ||||||||||||||||||||
Sbjct: 116560 aaagggacccatttaaaatc 116541

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>gb|AC122802.2| Mus musculus BAC clone RP24-136N24 from 6, complete sequence
          Length = 185938

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 326   tgaaccactggatcaaatgg 345
             ||||||||||||||||||||
Sbjct: 91829 tgaaccactggatcaaatgg 91848

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>emb|BX957326.8| Zebrafish DNA sequence from clone DKEY-31B16 in linkage group 23,
              complete sequence
          Length = 259092

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 57     atattaacagtacaaacaga 76
              ||||||||||||||||||||
Sbjct: 159589 atattaacagtacaaacaga 159608

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>emb|Z93928.1|HS127B14 Human DNA sequence from clone RP1-127B14 on chromosome Xq22, complete
             sequence
          Length = 126263

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 233   agcaccctctccctcagaaggaac 256
             ||||||||||| ||||||||||||
Sbjct: 32436 agcaccctctctctcagaaggaac 32459

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>emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 on chromosome 22, complete
             sequence
          Length = 176947

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 153   cctccacaggctcctccgaa 172
             ||||||||||||||||||||
Sbjct: 11528 cctccacaggctcctccgaa 11547

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>gb|AE014818.1| Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete
              sequence
          Length = 252632

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    tactaattgcttgtatatgc 413
              ||||||||||||||||||||
Sbjct: 141316 tactaattgcttgtatatgc 141335

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>gb|AY117176.1| Arabidopsis thaliana putative heat shock protein (At1g36390) mRNA,
           complete cds
          Length = 871

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 335 ggatcaaatggcttgccaacagtt 358
           |||||||| |||||||||||||||
Sbjct: 653 ggatcaaaaggcttgccaacagtt 630

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>gb|AY065397.1| Arabidopsis thaliana putative heat shock protein (At1g36390) mRNA,
           complete cds
          Length = 1024

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 335 ggatcaaatggcttgccaacagtt 358
           |||||||| |||||||||||||||
Sbjct: 702 ggatcaaaaggcttgccaacagtt 679

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>gb|AC005013.3| Homo sapiens BAC clone GS1-165L15 from 7, complete sequence
          Length = 195917

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   agcaccctctccctcagaag 252
             ||||||||||||||||||||
Sbjct: 85400 agcaccctctccctcagaag 85381

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>emb|BX571977.7| Zebrafish DNA sequence from clone DKEY-9E15, complete sequence
          Length = 82992

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 57    atattaacagtacaaacaga 76
             ||||||||||||||||||||
Sbjct: 77652 atattaacagtacaaacaga 77671

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>gb|AC157557.5| Mus musculus chromosome 7, clone RP24-369M22, complete sequence
          Length = 202543

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 423    ttgtgctaatcttctgctctttctcagtctct 454
              |||| |||||||||||||| |||||| |||||
Sbjct: 189293 ttgttctaatcttctgctccttctcattctct 189324

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>emb|BX814493.1|CNS0AAR9 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB77ZA09 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 988

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 335 ggatcaaatggcttgccaacagtt 358
           |||||||| |||||||||||||||
Sbjct: 685 ggatcaaaaggcttgccaacagtt 662

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>gb|AC097455.3| Homo sapiens BAC clone RP11-2J13 from 4, complete sequence
          Length = 147327

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 446   tcagtctctagtgtgacctctacatttgtttt 477
             |||||||||| ||  |||||||||||||||||
Sbjct: 73739 tcagtctctaatgaaacctctacatttgtttt 73708

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>gb|AC021199.7|AC021199 Arabidopsis thaliana chromosome 1 BAC F7F23 genomic sequence, complete
             sequence
          Length = 73252

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 335   ggatcaaatggcttgccaacagtt 358
             |||||||| |||||||||||||||
Sbjct: 53874 ggatcaaaaggcttgccaacagtt 53897

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>gb|AY088050.1| Arabidopsis thaliana clone 40701 mRNA, complete sequence
          Length = 1027

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 335 ggatcaaatggcttgccaacagtt 358
           |||||||| |||||||||||||||
Sbjct: 700 ggatcaaaaggcttgccaacagtt 677

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>emb|AL953894.5| Zebrafish DNA sequence from clone CH211-212B13 in linkage group 18,
              complete sequence
          Length = 222376

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 413    ccttgatagcttgtgctaatcttc 436
              |||||| |||||||||||||||||
Sbjct: 157635 ccttgaaagcttgtgctaatcttc 157658

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>emb|AL845477.8| Mouse DNA sequence from clone RP23-206J10 on chromosome 2, complete
             sequence
          Length = 103901

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 502   cagactctgtacaagttccacttg 525
             |||||||| |||||||||||||||
Sbjct: 48983 cagactctttacaagttccacttg 49006


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,074,847
Number of Sequences: 3902068
Number of extensions: 5074847
Number of successful extensions: 95059
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94929
Number of HSP's gapped (non-prelim): 120
length of query: 614
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 591
effective length of database: 17,143,297,704
effective search space: 10131688943064
effective search space used: 10131688943064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result