>RB27C_DROME (P48809) Heterogeneous nuclear ribonucleoprotein 27C (Hrb27-C)|
           (hnRNP 48) (HRP48.1)
          Length = 421

 Score = 32.3 bits (72), Expect = 0.95
 Identities = 13/58 (22%), Positives = 30/58 (51%)
 Frame = -2

Query: 561 FKKFGQLIPDGVAIRSRKETGGYYAFVEFEELSGVHNALRASPLEINGRQIYVEERKP 388
           F ++G++    +     K+    + F+ FEE S V +      + +NG+Q+ +++ +P
Sbjct: 116 FNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTNERYINLNGKQVEIKKAEP 173

>RB15B_HUMAN (Q8NDT2) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 563

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -2

Query: 561 FKKFGQLIPDGVAIRSRKETGGYYAFVEFEELSGVHNALRASPLEINGR 415
           F+K+G +I + V  R  +  GG YAF++F+ L   H A  A    + GR
Sbjct: 30  FEKYG-IIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGR 77

>ROA1_DROME (P07909) Heterogeneous nuclear ribonucleoprotein A1 (hnRNP core|
           protein A1-A) (PEN repeat clone P9)
          Length = 365

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = -2

Query: 561 FKKFGQLIPDGVAIRSRKETGGY--YAFVEFEELSGVHNALRASPLEINGRQIYVEERKP 388
           F+ FG ++   + I   KETG    +AFVEF++   V   +     ++NG+ + V++  P
Sbjct: 142 FQHFGNIVDINIVID--KETGKKRGFAFVEFDDYDPVDKVVLQKQHQLNGKMVDVKKALP 199

>RB15B_MOUSE (Q6PHZ5) Putative RNA-binding protein 15B (RNA-binding motif|
           protein 15B)
          Length = 564

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 18/49 (36%), Positives = 27/49 (55%)
 Frame = -2

Query: 561 FKKFGQLIPDGVAIRSRKETGGYYAFVEFEELSGVHNALRASPLEINGR 415
           F+K+G +I + V  R  +  GG YAF++F+ L   H A  A    + GR
Sbjct: 30  FEKYG-IIEEVVIKRPARGQGGAYAFLKFQNLDMAHRAKVAMSGRVIGR 77

>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660|
           (Poly(A)-binding protein At2g36660) (PABP)
          Length = 609

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = -2

Query: 561 FKKFGQLIPDGVAIRSRKETGGYYAFVEFEELSGVHNALRA-SPLEINGRQIYV 403
           FKKFG ++   VA     ++ GY  FV+FE+    H A++  +   +  ++IYV
Sbjct: 132 FKKFGNIVSCKVATLEDGKSRGY-GFVQFEQEDAAHAAIQTLNSTIVADKEIYV 184

>TYRP2_MOUSE (P29812) L-dopachrome tautomerase precursor (EC 5.3.3.12) (DT)|
           (DCT) (L-dopachrome delta-isomerase) (Tyrosinase-related
           protein 2) (TRP-2) (TRP2) (SLATY locus protein)
          Length = 517

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 143 ERSILLGCIFGFGVCLEFATAARPWTCPSVLTNR 42
           E + + G + G G C E  T  RPW+ P +L N+
Sbjct: 47  EATNICGFLEGRGQCAEVQTDTRPWSGPYILRNQ 80

>SNRPA_DROME (P43332) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1-A) (Sex determination protein snf)
          Length = 216

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = -2

Query: 561 FKKFGQLIPDGVAIRSRKETGGYYAFVEFEELSGVHNALR 442
           F +FGQ++ D VA+++ K  G   AFV F+E+    NALR
Sbjct: 31  FSQFGQIL-DIVALKTLKMRG--QAFVIFKEIGSASNALR 67

>ROA1_SCHAM (P21522) Heterogeneous nuclear ribonucleoprotein A1, A2/B1 homolog|
          Length = 342

 Score = 30.0 bits (66), Expect = 4.7
 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
 Frame = -2

Query: 561 FKKFGQLIPDGVAI--RSRKETGGYYAFVEFEELSGVHNALRASPLEINGRQIYVEERKP 388
           FK++G ++   + +   +RK+ G  +AFVEF++   V     +   +I G+ I V++  P
Sbjct: 128 FKQYGTVVSAAIVVDKETRKKRG--FAFVEFDDYDPVDKICLSRNHQIRGKHIDVKKALP 185

>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = -2

Query: 561 FKKFGQLIPDGVAIRSRKETGGYYAFVEFEELSGVHNALRA-SPLEINGRQIYVE 400
           F K+G++    V I+S +  G  +AFVEFE+     +A+RA    E +GR+I VE
Sbjct: 29  FHKYGRI--KYVDIKSGR--GPAFAFVEFEDHRDAEDAVRARDGYEFDGRRIRVE 79

>POLG_HCVVA (Q9QAX1) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 138  ALQ*FSFTTTAPLPTDQNLLCFLLSAWGISSLPPKCPSRG 257
            A+  FS   T+PLPT   +L  ++  W  S + P   + G
Sbjct: 1792 AMMAFSAALTSPLPTSTTILLNIMGGWLASQIAPAAGATG 1831

>SNRPA_HUMAN (P09012) U1 small nuclear ribonucleoprotein A (U1 snRNP protein A)|
           (U1A protein) (U1-A)
          Length = 281

 Score = 29.3 bits (64), Expect = 8.0
 Identities = 19/41 (46%), Positives = 26/41 (63%)
 Frame = -2

Query: 561 FKKFGQLIPDGVAIRSRKETGGYYAFVEFEELSGVHNALRA 439
           F +FGQ++ D +  RS K  G   AFV F+E+S   NALR+
Sbjct: 33  FSQFGQIL-DILVSRSLKMRG--QAFVIFKEVSSATNALRS 70


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,674,654
Number of Sequences: 219361
Number of extensions: 1486982
Number of successful extensions: 3954
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3953
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4643056080
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)