ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3g11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4,... 90 1e-14
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 90 1e-14
3dbj|AK072038.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
4dbj|AK070022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
5dbj|AK060828.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 1e-14
6ref|XM_473874.1| Oryza sativa (japonica cultivar-group), predic... 74 6e-10
7dbj|AK054505.1| Mus musculus 2 days pregnant adult female ovary ... 42 2.0
8emb|AL845445.14| Mouse DNA sequence from clone RP23-380B10 on ch... 42 2.0
9gb|AC084323.28| Mus musculus strain C57BL/6J chromosome 2 clone ... 42 2.0
10ref|XM_951814.1| Neurospora crassa OR74A hypothetical protein ( ... 40 8.1
11ref|XM_328139.1| Neurospora crassa OR74A hypothetical protein (N... 40 8.1
12gb|AC151324.2| Xenopus tropicalis clone ISB-266M19, complete seq... 40 8.1
13emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, co... 40 8.1
14gb|AE008839.1| Salmonella typhimurium LT2, section 143 of 220 of... 40 8.1
15emb|AL513408.1|NC61D6 Neurospora crassa DNA linkage group II Cos... 40 8.1
16gb|AC079257.7| Homo sapiens BAC clone RP11-367I6 from 4, complet... 40 8.1
17gb|AC096506.5| Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cance... 40 8.1
18gb|AF504923.1| Microctonus aethiopoides biotype Wisconsin intern... 40 8.1
19gb|AF504922.1| Microctonus aethiopoides biotype Wisconsin intern... 40 8.1
20gb|AC020732.4|AC020732 Homo sapiens BAC clone RP11-556H16 from X... 40 8.1
21dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
22gb|CP000026.1| Salmonella enterica subsp. enterica serovar Parat... 40 8.1
23dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
24dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic D... 40 8.1
25emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E ... 40 8.1
26gb|AE017220.1| Salmonella enterica subsp. enterica serovar Chole... 40 8.1
27dbj|AP000639.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.1
28gb|AC151318.2| Xenopus tropicalis clone ISB-241L4, complete sequ... 40 8.1 
>emb|AL731610.4|OSJN00255 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070C17,
              complete sequence
          Length = 160484

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 92/105 (87%), Gaps = 2/105 (1%)
 Strand = Plus / Plus

                                                                          
Query: 396    tattccccagatgaagttcactggggagggaaccagccactgctgtagagcctatctgat 455
              ||||||||||||| |  |||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct: 135864 tattccccagatggaactcactggggaggaaaccagccactgccgtagaacttatctgat 135923

                                                           
Query: 456    ggtcttggcattggc-tgcctgacaaggtcgacttggccatggtt 499
              || |||||||||||| |||| |||| ||||||||||  |||||||
Sbjct: 135924 ggccttggcattggcatgcc-gacatggtcgacttgcgcatggtt 135967



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                             
Query: 270    caacaagacacagtctttattgaaacatgcatccttgttaaggtacc 316
              |||||||| ||||||||| ||| ||||||||||||||| ||||||||
Sbjct: 135731 caacaagatacagtctttcttgcaacatgcatccttgtcaaggtacc 135777
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 92/105 (87%), Gaps = 2/105 (1%)
 Strand = Plus / Plus

                                                                            
Query: 396      tattccccagatgaagttcactggggagggaaccagccactgctgtagagcctatctgat 455
                ||||||||||||| |  |||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct: 31153783 tattccccagatggaactcactggggaggaaaccagccactgccgtagaacttatctgat 31153842

                                                             
Query: 456      ggtcttggcattggc-tgcctgacaaggtcgacttggccatggtt 499
                || |||||||||||| |||| |||| ||||||||||  |||||||
Sbjct: 31153843 ggccttggcattggcatgcc-gacatggtcgacttgcgcatggtt 31153886



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                               
Query: 270      caacaagacacagtctttattgaaacatgcatccttgttaaggtacc 316
                |||||||| ||||||||| ||| ||||||||||||||| ||||||||
Sbjct: 31153650 caacaagatacagtctttcttgcaacatgcatccttgtcaaggtacc 31153696
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>dbj|AK072038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M16, full
            insert sequence
          Length = 1900

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 92/105 (87%), Gaps = 2/105 (1%)
 Strand = Plus / Minus

                                                                        
Query: 396  tattccccagatgaagttcactggggagggaaccagccactgctgtagagcctatctgat 455
            ||||||||||||| |  |||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct: 1504 tattccccagatggaactcactggggaggaaaccagccactgccgtagaacttatctgat 1445

                                                         
Query: 456  ggtcttggcattggc-tgcctgacaaggtcgacttggccatggtt 499
            || |||||||||||| |||| |||| ||||||||||  |||||||
Sbjct: 1444 ggccttggcattggcatgcc-gacatggtcgacttgcgcatggtt 1401
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>dbj|AK070022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036C24, full
            insert sequence
          Length = 3235

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 92/105 (87%), Gaps = 2/105 (1%)
 Strand = Plus / Minus

                                                                        
Query: 396  tattccccagatgaagttcactggggagggaaccagccactgctgtagagcctatctgat 455
            ||||||||||||| |  |||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct: 2799 tattccccagatggaactcactggggaggaaaccagccactgccgtagaacttatctgat 2740

                                                         
Query: 456  ggtcttggcattggc-tgcctgacaaggtcgacttggccatggtt 499
            || |||||||||||| |||| |||| ||||||||||  |||||||
Sbjct: 2739 ggccttggcattggcatgcc-gacatggtcgacttgcgcatggtt 2696



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 270  caacaagacacagtctttattgaaacatgcatccttgttaaggtacc 316
            |||||||| ||||||||| ||| ||||||||||||||| ||||||||
Sbjct: 2932 caacaagatacagtctttcttgcaacatgcatccttgtcaaggtacc 2886
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>dbj|AK060828.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-C01, full
            insert sequence
          Length = 1535

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 92/105 (87%), Gaps = 2/105 (1%)
 Strand = Plus / Minus

                                                                        
Query: 396  tattccccagatgaagttcactggggagggaaccagccactgctgtagagcctatctgat 455
            ||||||||||||| |  |||||||||||| ||||||||||||| ||||| | ||||||||
Sbjct: 1081 tattccccagatggaactcactggggaggaaaccagccactgccgtagaacttatctgat 1022

                                                         
Query: 456  ggtcttggcattggc-tgcctgacaaggtcgacttggccatggtt 499
            || |||||||||||| |||| |||| ||||||||||  |||||||
Sbjct: 1021 ggccttggcattggcatgcc-gacatggtcgacttgcgcatggtt 978



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                           
Query: 270  caacaagacacagtctttattgaaacatgcatccttgttaaggtacc 316
            |||||||| ||||||||| ||| ||||||||||||||| ||||||||
Sbjct: 1214 caacaagatacagtctttcttgcaacatgcatccttgtcaaggtacc 1168
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>ref|XM_473874.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1317

 Score = 73.8 bits (37), Expect = 6e-10
 Identities = 75/85 (88%), Gaps = 2/85 (2%)
 Strand = Plus / Minus

                                                                        
Query: 416  ctggggagggaaccagccactgctgtagagcctatctgatggtcttggcattggc-tgcc 474
            ||||||||| ||||||||||||| ||||| | |||||||||| |||||||||||| ||||
Sbjct: 1182 ctggggaggaaaccagccactgccgtagaacttatctgatggccttggcattggcatgcc 1123

                                     
Query: 475  tgacaaggtcgacttggccatggtt 499
             |||| ||||||||||  |||||||
Sbjct: 1122 -gacatggtcgacttgcgcatggtt 1099
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>dbj|AK054505.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330033N02
           product:unclassifiable, full insert sequence
          Length = 3452

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 419 gggagggaaccagccactgct 439
           |||||||||||||||||||||
Sbjct: 304 gggagggaaccagccactgct 324
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>emb|AL845445.14| Mouse DNA sequence from clone RP23-380B10 on chromosome 2, complete
              sequence
          Length = 126636

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 485    gacttggccatggttcttcct 505
              |||||||||||||||||||||
Sbjct: 101471 gacttggccatggttcttcct 101451
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>gb|AC084323.28| Mus musculus strain C57BL/6J chromosome 2 clone rp23-403l21, complete
             sequence
          Length = 188905

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 485   gacttggccatggttcttcct 505
             |||||||||||||||||||||
Sbjct: 58330 gacttggccatggttcttcct 58310
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>ref|XM_951814.1| Neurospora crassa OR74A hypothetical protein ( (AL513408) conserved
            hypothetical protein [Neurospora crassa OR74A] )
            (NCU01701.1) partial mRNA
          Length = 1872

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 460  ttggcattggctgcctgaca 479
            ||||||||||||||||||||
Sbjct: 1536 ttggcattggctgcctgaca 1517
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>ref|XM_328139.1| Neurospora crassa OR74A hypothetical protein (NCU01701.1) partial
            mRNA
          Length = 1872

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 460  ttggcattggctgcctgaca 479
            ||||||||||||||||||||
Sbjct: 1536 ttggcattggctgcctgaca 1517
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>gb|AC151324.2| Xenopus tropicalis clone ISB-266M19, complete sequence
          Length = 72079

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 369   ttatttgcatttgggcagtt 388
             ||||||||||||||||||||
Sbjct: 65143 ttatttgcatttgggcagtt 65162
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>emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, complete sequence
          Length = 195301

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 487    cttggccatggttcttcctagcac 510
              |||||||||| |||||||||||||
Sbjct: 106901 cttggccatgtttcttcctagcac 106924
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>gb|AE008839.1| Salmonella typhimurium LT2, section 143 of 220 of the complete genome
          Length = 22400

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 509   accatcataagtggaaggaa 528
             ||||||||||||||||||||
Sbjct: 12793 accatcataagtggaaggaa 12812
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>emb|AL513408.1|NC61D6 Neurospora crassa DNA linkage group II Cosmid clone 61D6
          Length = 38848

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 460   ttggcattggctgcctgaca 479
             ||||||||||||||||||||
Sbjct: 18416 ttggcattggctgcctgaca 18435
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>gb|AC079257.7| Homo sapiens BAC clone RP11-367I6 from 4, complete sequence
          Length = 133401

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 489   tggccatggttcttcctagc 508
             ||||||||||||||||||||
Sbjct: 26970 tggccatggttcttcctagc 26951
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>gb|AC096506.5| Homo sapiens Xp BAC RP11-64I1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120135

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 487   cttggccatggttcttcctagcac 510
             |||||||||| |||||||||||||
Sbjct: 10454 cttggccatgtttcttcctagcac 10431
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>gb|AF504923.1| Microctonus aethiopoides biotype Wisconsin internal transcribed
           spacer 1, partial sequence
          Length = 556

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 21  aacatgtcttacaacttaca 40
           ||||||||||||||||||||
Sbjct: 169 aacatgtcttacaacttaca 150
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>gb|AF504922.1| Microctonus aethiopoides biotype Wisconsin internal transcribed
           spacer 1, partial sequence
          Length = 564

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 21  aacatgtcttacaacttaca 40
           ||||||||||||||||||||
Sbjct: 169 aacatgtcttacaacttaca 150
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>gb|AC020732.4|AC020732 Homo sapiens BAC clone RP11-556H16 from X, complete sequence
          Length = 181559

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 487  cttggccatggttcttcctagcac 510
            |||||||||| |||||||||||||
Sbjct: 8454 cttggccatgtttcttcctagcac 8431
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                               
Query: 13      gttaacataacatgtcttacaacttacaagca 44
               ||||||||||||| | ||||||||||||||||
Sbjct: 3790589 gttaacataacattt-ttacaacttacaagca 3790619
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>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150
          Length = 4585229

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 509     accatcataagtggaaggaa 528
               ||||||||||||||||||||
Sbjct: 3009798 accatcataagtggaaggaa 3009817
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>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496D04
          Length = 197358

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                             
Query: 13    gttaacataacatgtcttacaacttacaagca 44
             ||||||||||||| | ||||||||||||||||
Sbjct: 29701 gttaacataacattt-ttacaacttacaagca 29731
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>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0050F10
          Length = 151986

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 30/32 (93%), Gaps = 1/32 (3%)
 Strand = Plus / Plus

                                              
Query: 13     gttaacataacatgtcttacaacttacaagca 44
              ||||||||||||| | ||||||||||||||||
Sbjct: 134940 gttaacataacattt-ttacaacttacaagca 134970
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>emb|CT573071.1| Kuenenia stuttgartiensis genome fragment KUST_E (5 of 5)
          Length = 2199546

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 194     acaaactcaaaagttctgtcaaag 217
               |||||||||| |||||||||||||
Sbjct: 1051645 acaaactcaatagttctgtcaaag 1051668
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>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67,
               complete genome
          Length = 4755700

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 509     accatcataagtggaaggaa 528
               ||||||||||||||||||||
Sbjct: 3151061 accatcataagtggaaggaa 3151080
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>dbj|AP000639.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-26D11, complete
             sequences
          Length = 103758

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    acataacatgtcttacaact 36
             ||||||||||||||||||||
Sbjct: 87506 acataacatgtcttacaact 87487
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>gb|AC151318.2| Xenopus tropicalis clone ISB-241L4, complete sequence
          Length = 71260

 Score = 40.1 bits (20), Expect = 8.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 369   ttatttgcatttgggcagtt 388
             ||||||||||||||||||||
Sbjct: 35766 ttatttgcatttgggcagtt 35747


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,589,997
Number of Sequences: 3902068
Number of extensions: 4589997
Number of successful extensions: 77265
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 77174
Number of HSP's gapped (non-prelim): 94
length of query: 592
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 569
effective length of database: 17,143,297,704
effective search space: 9754536393576
effective search space used: 9754536393576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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