>POLG_RTSVT (Q91PP5) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding protei
          Length = 3471

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 50  ATDQQYSHLYTYIHNGSFYIQQYIP 124
           A ++++ HL++  HNGSF  Q+ IP
Sbjct: 352 ACNEEFIHLHSQFHNGSFRSQRPIP 376

>POLG_RTSVA (Q83034) Genome polyprotein [Contains: Putative leader protein;|
           Coat protein 1 (25 kDa protein) (CP-1); Coat protein 2
           (26 kDa protein) (CP-2); Coat protein 3 (35 kDa protein)
           (CP-3); Putative helicase (EC 3.6.1.-) (Putative
           NTP-binding protei
          Length = 3473

 Score = 27.7 bits (60), Expect = 9.2
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +2

Query: 56  DQQYSHLYTYIHNGSFYIQQYIP 124
           ++++ HL++  HNGSF  Q+ IP
Sbjct: 355 NEEFIHLHSQFHNGSFRSQRPIP 377


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,785,337
Number of Sequences: 219361
Number of extensions: 260023
Number of successful extensions: 654
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 80,573,946
effective HSP length: 20
effective length of database: 76,186,726
effective search space used: 1828481424
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)