ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATPG_MYCTU (P63671) ATP synthase gamma chain (EC 3.6.3.14) (ATP ... 29 6.6
2ATPG_MYCBO (P63672) ATP synthase gamma chain (EC 3.6.3.14) (ATP ... 29 6.6
3YEK9_SCHPO (O36021) Hypothetical protein C4F10.09c in chromosome I 29 6.6
4PIP1_DROME (P25455) 1-phosphatidylinositol-4,5-bisphosphate phos... 28 8.6

>ATPG_MYCTU (P63671) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 305

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 417 HRLCPMVPTHAKEEIASSTLMSPEADSKM 331
           HR+ PMV  + +E+I   TL S E D+ M
Sbjct: 200 HRIAPMVVEYVEEDIGPRTLYSFEPDATM 228



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>ATPG_MYCBO (P63672) ATP synthase gamma chain (EC 3.6.3.14) (ATP synthase F1|
           sector gamma subunit)
          Length = 305

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 417 HRLCPMVPTHAKEEIASSTLMSPEADSKM 331
           HR+ PMV  + +E+I   TL S E D+ M
Sbjct: 200 HRIAPMVVEYVEEDIGPRTLYSFEPDATM 228



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>YEK9_SCHPO (O36021) Hypothetical protein C4F10.09c in chromosome I|
          Length = 860

 Score = 28.9 bits (63), Expect = 6.6
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +1

Query: 88  TCI*EPRKYRSRYHSDVTLVSSYVLYGERRTIQAKIKMQIQNHILLPF 231
           +C+ E   + + +H  V+L++  ++YGE+   +  + +   NH L  F
Sbjct: 588 SCLWEIHPFLNHFHPTVSLLAKSLVYGEKILGKPNLSLHTLNHFLDKF 635



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>PIP1_DROME (P25455) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           classes I and II (EC 3.1.4.11) (Phosphoinositide
           phospholipase C)
          Length = 1312

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -3

Query: 387 AKEEIASSTLMSPEADSKMPGTTPGAPSGDQ 295
           +K+   SS   S   D  +P TTP  PSG++
Sbjct: 553 SKDSTGSSDSDSSSEDESLPNTTPNLPSGNE 583


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,873,331
Number of Sequences: 219361
Number of extensions: 1432136
Number of successful extensions: 3519
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3519
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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