>CO4A4_RABIT (P55787) Collagen alpha-4(IV) chain (Fragment)|
          Length = 623

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 26/77 (33%), Positives = 32/77 (41%)
 Frame = +1

Query: 196 LPERKGEKGLPQAILQRSRIQPLGAPLKPAEIGQHRREPSPKQLTPQIAGALHFPLPERD 375
           LP   GEKGLP +     R  P G P    E G     P+ +   P+I G    P P   
Sbjct: 271 LPGLPGEKGLPGS---PGRKGPTGPPGYRGEPGP----PADEDSCPRIPGLPGVPGPRGP 323

Query: 376 EHTR*YPAQLVPEHRGC 426
           E    +P Q  P  +GC
Sbjct: 324 EGAMGFPGQRGPPGQGC 340

>FHAB_BORPE (P12255) Filamentous hemagglutinin|
          Length = 3590

 Score = 31.2 bits (69), Expect = 1.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 389 QRVCSSRSGKGKCSAPAI*GVNCFGDGSRRC*PISAGFKGAPRG 258
           Q   SS+ GK       + G N +   +RR  PI+AG +GA  G
Sbjct: 241 QGAVSSKQGKPLADIAVVAGANRYDHATRRATPIAAGARGAAAG 284

>DPO3A_PSEAE (Q9HXZ1) DNA polymerase III alpha subunit (EC 2.7.7.7)|
          Length = 1173

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
 Frame = -3

Query: 459 GQDELIRMHEQASPMFRYELSRISAGVFIALGQGKVQCPSDLRSQLFRGWFT-----PML 295
           G D  +   E+  P+ R  L  ++A  +            +L   + RGW        ++
Sbjct: 66  GADIWLASREEDGPLSRLSLLAMNAKGY-----------RNLTELISRGWSEGQRNGEII 114

Query: 294 TDFGWLQRCSKGLDA--RALEDSLGQALLTLPLREQQSLFEEWFQCF 160
            +  W++  ++GL A   A E  +G ALL     + ++L  EW + F
Sbjct: 115 IERDWVKEAAEGLIALSAAKEGEIGHALLDGEEAKAEALLREWMEVF 161

>CDSN_MOUSE (Q7TPC1) Corneodesmosin precursor|
          Length = 561

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 467 CGLGKTSSSG-CTSRHPRCSGTS*AGYQRVCSSRSGKGKCSAP 342
           CG G  SS G C+    + + +S +     CS  S +G CS+P
Sbjct: 412 CGTGSVSSKGPCSGTRIQITSSSSSTSYHPCSGGSSQGPCSSP 454

>TSP2_CHICK (P35440) Thrombospondin-2 precursor|
          Length = 1178

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
 Frame = -1

Query: 488 WRRIS*CCGLG-KTSSSGCTSRHPRCSGTS*AGYQR---VCSSRSGK--GKCSAPAI*GV 327
           W   +  CG G +  S  C S  P+  G    G  +   +C+ R     G  S P   G 
Sbjct: 509 WSACTVTCGGGIRERSRLCNSPEPQYGGKPCVGDTKQHDMCNKRDCPIDGCLSNPCFPGA 568

Query: 326 NC--FGDGSRRC*PISAGFKG 270
            C  + DGS  C P  AGF G
Sbjct: 569 ECNSYPDGSWSCGPCPAGFLG 589

>PDR15_ARATH (Q7PC81) Putative pleiotropic drug resistance protein 15|
          Length = 1390

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 424 IPDVQVRAEPDISGCVHRARARESAVPQRSEESTVSGMV-HADVDRFRLASKV 269
           IP++ VR   D SGC   A +R   + + S    + G+V   D+D +  A+ +
Sbjct: 224 IPELSVRETLDFSGCFQGAGSRLEMMKEISRREKLKGIVPDPDIDAYMKAASI 276

>COAA1_CHICK (P08125) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/56 (33%), Positives = 25/56 (44%)
 Frame = +1

Query: 199 PERKGEKGLPQAILQRSRIQPLGAPLKPAEIGQHRREPSPKQLTPQIAGALHFPLP 366
           P  KG++GLP A  +     P G P +P E+G  +  P        I GA   P P
Sbjct: 224 PGMKGDRGLPGARGEAGIPGPQGPPGEPGEVGIGKPGPMGPPGPAGIPGAKGLPGP 279

>RECG_ECOLI (P24230) ATP-dependent DNA helicase recG (EC 3.6.1.-)|
          Length = 693

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
 Frame = -3

Query: 372 ALGQGK---VQCPSDLRSQL----FRGWFTPMLTDFGWLQRCSKGLDARALEDSLGQALL 214
           A+  GK   +  P++L ++     FR WF P+  + GWL    KG    A ++++    +
Sbjct: 313 AIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIEVGWLAGKQKGKARLAQQEAIASGQV 372

Query: 213 TLPLREQQSLFEEWFQ 166
            + +    ++F+E  Q
Sbjct: 373 QM-IVGTHAIFQEQVQ 387

>CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)|
          Length = 453

 Score = 29.3 bits (64), Expect = 6.2
 Identities = 25/76 (32%), Positives = 29/76 (38%)
 Frame = +1

Query: 199 PERKGEKGLPQAILQRSRIQPLGAPLKPAEIGQHRREPSPKQLTPQIAGALHFPLPERDE 378
           P   G+KGLP    +R    PLG P    E G     P+     P+I G    P P   E
Sbjct: 102 PGPPGDKGLPGPPGRRG---PLGPPGSRGEPGP----PADLDACPRIPGLPGVPGPRGPE 154

Query: 379 HTR*YPAQLVPEHRGC 426
            T   P    P   GC
Sbjct: 155 GTMGLPGMRGPPGPGC 170

>WFDC1_HUMAN (Q9HC57) WAP four-disulfide core domain protein 1 precursor|
           (Prostate stromal protein ps20) (ps20 growth inhibitor)
          Length = 220

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 20/71 (28%), Positives = 29/71 (40%)
 Frame = +1

Query: 214 EKGLPQAILQRSRIQPLGAPLKPAEIGQHRREPSPKQLTPQIAGALHFPLPERDEHTR*Y 393
           ++ LP  + ++SR +  GAP  P +    R  P P+ L P   GA      + D      
Sbjct: 36  KRALPARLAEKSRAEEAGAPGGPRQPRADRCPPPPRTLPP---GACQAARCQADSE---- 88

Query: 394 PAQLVPEHRGC 426
                P HR C
Sbjct: 89  ----CPRHRRC 95

>CAC1I_RAT (Q9Z0Y8) Voltage-dependent T-type calcium channel alpha-1I subunit|
           (Voltage-gated calcium channel alpha subunit Cav3.3)
           (CaVT.3)
          Length = 2201

 Score = 28.9 bits (63), Expect = 8.1
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 190 LLLPERKGEKGLPQAILQRSRIQPLGAPLKPAEIGQHRREPSPKQLTPQIAGALHFPL 363
           +L   ++   GL QA+  R +    G P  PA+ G H +EPS  +L P+     H PL
Sbjct: 443 ILRKAKRRALGLYQALQNRRQAMGPGTPA-PAKPGPHAKEPSHCKLCPR-----HSPL 494


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,020,933
Number of Sequences: 219361
Number of extensions: 1554464
Number of successful extensions: 4445
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4252
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4439
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3581144924
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)