ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2p12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467483.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1230 Score = 482 bits (243), Expect = e-133 Identities = 439/503 (87%), Gaps = 1/503 (0%) Strand = Plus / Minus Query: 232 cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 291 |||||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct: 1122 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 1063 Query: 292 taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 351 ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| ||| Sbjct: 1062 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 1003 Query: 352 gcaatgtgcgagaatagtgttgatgagatcctccacaagcttcggttctgctctttagct 411 |||||||| | || || |||||||| | |||||||||||||| || |||||| | ||| Sbjct: 1002 gcaatgtgtgcaaacagggttgatgaaaccctccacaagcttctattttgctctcttgct 943 Query: 412 agttctattgcctctaatgttctcttggtcaccactacttcatgcattccagctaaacat 471 | | |||||||||||| |||||||||||| |||||||| |||||||||||||||||||| Sbjct: 942 aatgctattgcctctagtgttctcttggttaccactacctcatgcattccagctaaacac 883 Query: 472 tcaccaccggtaagccattccaactgtttccctgactgaatgagaagacagccaacaggg 531 || ||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||| Sbjct: 882 tccccaccagtaagccattccagctgtttccctgattgaattagaagacagccaacaggg 823 Query: 532 accttcacctccatctttttaccattacttaaccaaatgttcaggcctggaaatctacta 591 ||||| || ||||||||||| || || |||| ||| ||||||||||||||||||||||| Sbjct: 822 accttaacttccatctttttgccgttccttagccagatgttcaggcctggaaatctactt 763 Query: 592 cgaccgtgtatggtcaagaaattaagatcataatggaacccagcaaacactgtgccctca 651 ||||| |||||||||| |||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 762 cgaccatgtatggtcaggaaattgagatcataatggaacccagcaaaaacagtgccctca 703 Query: 652 gaaccgtgacgcagcagattacttccagttggtgctagggaggtgtggtccctccttcat 711 ||||| || ||| || | ||||||||||||||||| |||||||||||||||||||||| Sbjct: 702 gaaccatgccgctcaaggtcacttccagttggtgcta-ggaggtgtggtccctccttcat 644 Query: 712 caaagaggtaaatgcatcctttg 734 ||||||||||||||||||||||| Sbjct: 643 caaagaggtaaatgcatcctttg 621
>ref|XM_506940.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.18 mRNA Length = 1650 Score = 482 bits (243), Expect = e-133 Identities = 439/503 (87%), Gaps = 1/503 (0%) Strand = Plus / Minus Query: 232 cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 291 |||||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct: 1248 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 1189 Query: 292 taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 351 ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| ||| Sbjct: 1188 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 1129 Query: 352 gcaatgtgcgagaatagtgttgatgagatcctccacaagcttcggttctgctctttagct 411 |||||||| | || || |||||||| | |||||||||||||| || |||||| | ||| Sbjct: 1128 gcaatgtgtgcaaacagggttgatgaaaccctccacaagcttctattttgctctcttgct 1069 Query: 412 agttctattgcctctaatgttctcttggtcaccactacttcatgcattccagctaaacat 471 | | |||||||||||| |||||||||||| |||||||| |||||||||||||||||||| Sbjct: 1068 aatgctattgcctctagtgttctcttggttaccactacctcatgcattccagctaaacac 1009 Query: 472 tcaccaccggtaagccattccaactgtttccctgactgaatgagaagacagccaacaggg 531 || ||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||| Sbjct: 1008 tccccaccagtaagccattccagctgtttccctgattgaattagaagacagccaacaggg 949 Query: 532 accttcacctccatctttttaccattacttaaccaaatgttcaggcctggaaatctacta 591 ||||| || ||||||||||| || || |||| ||| ||||||||||||||||||||||| Sbjct: 948 accttaacttccatctttttgccgttccttagccagatgttcaggcctggaaatctactt 889 Query: 592 cgaccgtgtatggtcaagaaattaagatcataatggaacccagcaaacactgtgccctca 651 ||||| |||||||||| |||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 888 cgaccatgtatggtcaggaaattgagatcataatggaacccagcaaaaacagtgccctca 829 Query: 652 gaaccgtgacgcagcagattacttccagttggtgctagggaggtgtggtccctccttcat 711 ||||| || ||| || | ||||||||||||||||| |||||||||||||||||||||| Sbjct: 828 gaaccatgccgctcaaggtcacttccagttggtgcta-ggaggtgtggtccctccttcat 770 Query: 712 caaagaggtaaatgcatcctttg 734 ||||||||||||||||||||||| Sbjct: 769 caaagaggtaaatgcatcctttg 747
>dbj|AK121801.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097G14, full insert sequence Length = 1632 Score = 482 bits (243), Expect = e-133 Identities = 439/503 (87%), Gaps = 1/503 (0%) Strand = Plus / Minus Query: 232 cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 291 |||||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct: 1122 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 1063 Query: 292 taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 351 ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| ||| Sbjct: 1062 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 1003 Query: 352 gcaatgtgcgagaatagtgttgatgagatcctccacaagcttcggttctgctctttagct 411 |||||||| | || || |||||||| | |||||||||||||| || |||||| | ||| Sbjct: 1002 gcaatgtgtgcaaacagggttgatgaaaccctccacaagcttctattttgctctcttgct 943 Query: 412 agttctattgcctctaatgttctcttggtcaccactacttcatgcattccagctaaacat 471 | | |||||||||||| |||||||||||| |||||||| |||||||||||||||||||| Sbjct: 942 aatgctattgcctctagtgttctcttggttaccactacctcatgcattccagctaaacac 883 Query: 472 tcaccaccggtaagccattccaactgtttccctgactgaatgagaagacagccaacaggg 531 || ||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||| Sbjct: 882 tccccaccagtaagccattccagctgtttccctgattgaattagaagacagccaacaggg 823 Query: 532 accttcacctccatctttttaccattacttaaccaaatgttcaggcctggaaatctacta 591 ||||| || ||||||||||| || || |||| ||| ||||||||||||||||||||||| Sbjct: 822 accttaacttccatctttttgccgttccttagccagatgttcaggcctggaaatctactt 763 Query: 592 cgaccgtgtatggtcaagaaattaagatcataatggaacccagcaaacactgtgccctca 651 ||||| |||||||||| |||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 762 cgaccatgtatggtcaggaaattgagatcataatggaacccagcaaaaacagtgccctca 703 Query: 652 gaaccgtgacgcagcagattacttccagttggtgctagggaggtgtggtccctccttcat 711 ||||| || ||| || | ||||||||||||||||| |||||||||||||||||||||| Sbjct: 702 gaaccatgccgctcaaggtcacttccagttggtgcta-ggaggtgtggtccctccttcat 644 Query: 712 caaagaggtaaatgcatcctttg 734 ||||||||||||||||||||||| Sbjct: 643 caaagaggtaaatgcatcctttg 621
>dbj|AK067050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092A12, full insert sequence Length = 1650 Score = 474 bits (239), Expect = e-130 Identities = 438/503 (87%), Gaps = 1/503 (0%) Strand = Plus / Minus Query: 232 cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 291 |||||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct: 1248 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 1189 Query: 292 taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 351 ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| ||| Sbjct: 1188 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 1129 Query: 352 gcaatgtgcgagaatagtgttgatgagatcctccacaagcttcggttctgctctttagct 411 |||||||| | || || |||||||| | |||||||||||||| || |||||| | ||| Sbjct: 1128 gcaatgtgtgcaaacagggttgatgaaaccctccacaagcttctattttgctctcttgct 1069 Query: 412 agttctattgcctctaatgttctcttggtcaccactacttcatgcattccagctaaacat 471 | | |||||||||||| ||||||||| || |||||||| |||||||||||||||||||| Sbjct: 1068 aatgctattgcctctagtgttctcttagttaccactacctcatgcattccagctaaacac 1009 Query: 472 tcaccaccggtaagccattccaactgtttccctgactgaatgagaagacagccaacaggg 531 || ||||| ||||||||||||| |||||||||||| ||||| |||||||||||||||||| Sbjct: 1008 tccccaccagtaagccattccagctgtttccctgattgaattagaagacagccaacaggg 949 Query: 532 accttcacctccatctttttaccattacttaaccaaatgttcaggcctggaaatctacta 591 ||||| || ||||||||||| || || |||| ||| ||||||||||||||||||||||| Sbjct: 948 accttaacttccatctttttgccgttccttagccagatgttcaggcctggaaatctactt 889 Query: 592 cgaccgtgtatggtcaagaaattaagatcataatggaacccagcaaacactgtgccctca 651 ||||| |||||||||| |||||| ||||||||||||||||||||||| || ||||||||| Sbjct: 888 cgaccatgtatggtcaggaaattgagatcataatggaacccagcaaaaacagtgccctca 829 Query: 652 gaaccgtgacgcagcagattacttccagttggtgctagggaggtgtggtccctccttcat 711 ||||| || ||| || | ||||||||||||||||| |||||||||||||||||||||| Sbjct: 828 gaaccatgccgctcaaggtcacttccagttggtgcta-ggaggtgtggtccctccttcat 770 Query: 712 caaagaggtaaatgcatcctttg 734 ||||||||||||||||||||||| Sbjct: 769 caaagaggtaaatgcatcctttg 747
>gb|BT018944.1| Zea mays clone Contig92.F mRNA sequence Length = 777 Score = 396 bits (200), Expect = e-107 Identities = 402/468 (85%), Gaps = 1/468 (0%) Strand = Plus / Plus Query: 265 acatactccccggcacatataggcggataactatgagcattgggtgcttcagcaaagtgg 324 ||||| ||||| || |||||||| ||||| |||||||| |||| ||||||||||||| Sbjct: 290 acataatccccagcgcatataggtggataggaatgagcatcaggtgtttcagcaaagtgg 349 Query: 325 cccaatggcttgagcgtcgcatcggaagcaatgtgcgagaatagtgttgatgagatcctc 384 || | ||||| || | ||||| ||||||||||||| ||| ||||||||||| | |||| Sbjct: 350 ccgagcggcttaagaattgcatccgaagcaatgtgcgcgaacagtgttgatgaaaccctc 409 Query: 385 cacaagcttcggttctgctctttagctagttctattgcctctaatgttctcttggtcacc 444 |||||||||| ||||| ||||| ||||| |||| ||||||| ||| ||||| || ||| Sbjct: 410 cacaagcttctattctgttctttcgctagcgctatggcctctagtgtcctcttagttacc 469 Query: 445 actacttcatgcattccagctaaacattcaccaccggtaagccattccaactgtttccct 504 ||||| |||||||||||||| ||||| || ||||| ||||||||||||| |||||| || Sbjct: 470 actacctcatgcattccagccaaacaatcgccaccagtaagccattccagctgttttcca 529 Query: 505 gactgaatgagaagacagccaacagggaccttcacctccatctttttaccattacttaac 564 |||||||| ||||| || ||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 530 gactgaattagaaggcaaccaacagggactttcacctccatctttttaccattccttaac 589 Query: 565 caaatgttcaggcctggaaatctactacgaccgtgtatggtcaagaaattaagatcataa 624 || ||||| |||||||| |||||||| || || ||||| |||||||||||||||||||| Sbjct: 590 cagatgttaaggcctgggaatctacttcggccatgtatcgtcaagaaattaagatcatag 649 Query: 625 tggaacccagcaaacactgtgccctcagaaccgtgacgcagcagattacttccagttggt 684 ||||| |||||||| || |||||||||||||| |||||| |||| | ||||||||||||| Sbjct: 650 tggaatccagcaaaaacggtgccctcagaaccatgacgctgcaggtcacttccagttggt 709 Query: 685 gctagggaggtgtggtccctccttcatcaaagaggtaaatgcatcctt 732 || | |||| ||||||||||| ||||||||||| |||||||||||||| Sbjct: 710 gcga-ggagatgtggtccctctttcatcaaagaagtaaatgcatcctt 756
>gb|AY108869.1| Zea mays PCO130984 mRNA sequence Length = 1058 Score = 396 bits (200), Expect = e-107 Identities = 402/468 (85%), Gaps = 1/468 (0%) Strand = Plus / Minus Query: 265 acatactccccggcacatataggcggataactatgagcattgggtgcttcagcaaagtgg 324 ||||| ||||| || |||||||| ||||| |||||||| |||| ||||||||||||| Sbjct: 724 acataatccccagcgcatataggtggataggaatgagcatcaggtgtttcagcaaagtgg 665 Query: 325 cccaatggcttgagcgtcgcatcggaagcaatgtgcgagaatagtgttgatgagatcctc 384 || | ||||| || | ||||| ||||||||||||| ||| ||||||||||| | |||| Sbjct: 664 ccgagcggcttaagaattgcatccgaagcaatgtgcgcgaacagtgttgatgaaaccctc 605 Query: 385 cacaagcttcggttctgctctttagctagttctattgcctctaatgttctcttggtcacc 444 |||||||||| ||||| ||||| ||||| |||| ||||||| ||| ||||| || ||| Sbjct: 604 cacaagcttctattctgttctttcgctagcgctatggcctctagtgtcctcttagttacc 545 Query: 445 actacttcatgcattccagctaaacattcaccaccggtaagccattccaactgtttccct 504 ||||| |||||||||||||| ||||| || ||||| ||||||||||||| |||||| || Sbjct: 544 actacctcatgcattccagccaaacaatcgccaccagtaagccattccagctgttttcca 485 Query: 505 gactgaatgagaagacagccaacagggaccttcacctccatctttttaccattacttaac 564 |||||||| ||||| || ||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 484 gactgaattagaaggcaaccaacagggactttcacctccatctttttaccattccttaac 425 Query: 565 caaatgttcaggcctggaaatctactacgaccgtgtatggtcaagaaattaagatcataa 624 || ||||| |||||||| |||||||| || || ||||| |||||||||||||||||||| Sbjct: 424 cagatgttaaggcctgggaatctacttcggccatgtatcgtcaagaaattaagatcatag 365 Query: 625 tggaacccagcaaacactgtgccctcagaaccgtgacgcagcagattacttccagttggt 684 ||||| |||||||| || |||||||||||||| |||||| |||| | ||||||||||||| Sbjct: 364 tggaatccagcaaaaacggtgccctcagaaccatgacgctgcaggtcacttccagttggt 305 Query: 685 gctagggaggtgtggtccctccttcatcaaagaggtaaatgcatcctt 732 || | |||| ||||||||||| ||||||||||| |||||||||||||| Sbjct: 304 gcga-ggagatgtggtccctctttcatcaaagaagtaaatgcatcctt 258
>gb|BT018705.1| Zea mays clone EL01N0515E01.d mRNA sequence Length = 1290 Score = 381 bits (192), Expect = e-102 Identities = 400/468 (85%), Gaps = 1/468 (0%) Strand = Plus / Minus Query: 265 acatactccccggcacatataggcggataactatgagcattgggtgcttcagcaaagtgg 324 ||||| ||||| || |||||||| ||||| |||||||| |||| ||||||||||||| Sbjct: 969 acataatccccagcgcatataggtggataggaatgagcatcaggtgtttcagcaaagtgg 910 Query: 325 cccaatggcttgagcgtcgcatcggaagcaatgtgcgagaatagtgttgatgagatcctc 384 || | ||||| || | ||||| ||||||||||||| ||| ||||||||||| | |||| Sbjct: 909 ccgagcggcttaagaattgcatccgaagcaatgtgcgcgaacagtgttgatgaaaccctc 850 Query: 385 cacaagcttcggttctgctctttagctagttctattgcctctaatgttctcttggtcacc 444 |||||||||| ||||| ||||| ||||| |||| ||||||| ||| ||||| || ||| Sbjct: 849 cacaagcttctattctgttctttcgctagcgctatggcctctagtgtcctcttagttacc 790 Query: 445 actacttcatgcattccagctaaacattcaccaccggtaagccattccaactgtttccct 504 ||||| |||||||||||||| ||||| || ||||| ||||||||||||| |||||| || Sbjct: 789 actacctcatgcattccagccaaacaatcgccaccagtaagccattccagctgttttcca 730 Query: 505 gactgaatgagaagacagccaacagggaccttcacctccatctttttaccattacttaac 564 |||||||| ||||| || ||||||||||| ||||||||||||||||||||||| |||||| Sbjct: 729 gactgaattagaaggcaaccaacagggactttcacctccatctttttaccattccttaac 670 Query: 565 caaatgttcaggcctggaaatctactacgaccgtgtatggtcaagaaattaagatcataa 624 || ||||| |||||||| |||||||| || || ||||| |||||||||||||||||||| Sbjct: 669 cagatgttaaggcctgggaatctacttcggccatgtatcgtcaagaaattaagatcatag 610 Query: 625 tggaacccagcaaacactgtgccctcagaaccgtgacgcagcagattacttccagttggt 684 ||||| |||||||| || |||||||||||||| |||||| |||| | ||||||||||||| Sbjct: 609 tggaatccagcaaaaacggtgccctcagaaccatgacgctgcaggtcacttccagttggt 550 Query: 685 gctagggaggtgtggtccctccttcatcaaagaggtaaatgcatcctt 732 || | |||| ||||||||||| || || ||||| |||||||||||||| Sbjct: 549 gcga-ggagatgtggtccctctttaatgaaagaagtaaatgcatcctt 503
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 226 bits (114), Expect = 8e-56 Identities = 187/210 (89%), Gaps = 1/210 (0%) Strand = Plus / Minus Query: 495 ctgtttccctgactgaatgagaagacagccaacagggaccttcacctccatctttttacc 554 |||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| || Sbjct: 29803437 ctgtttccctgattgaattagaagacagccaacagggaccttaacttccatctttttgcc 29803378 Query: 555 attacttaaccaaatgttcaggcctggaaatctactacgaccgtgtatggtcaagaaatt 614 || |||| ||| ||||||||||||||||||||||| ||||| |||||||||| |||||| Sbjct: 29803377 gttccttagccagatgttcaggcctggaaatctacttcgaccatgtatggtcaggaaatt 29803318 Query: 615 aagatcataatggaacccagcaaacactgtgccctcagaaccgtgacgcagcagattact 674 ||||||||||||||||||||||| || |||||||||||||| || ||| || | ||| Sbjct: 29803317 gagatcataatggaacccagcaaaaacagtgccctcagaaccatgccgctcaaggtcact 29803258 Query: 675 tccagttggtgctagggaggtgtggtccct 704 |||||||||||||| ||||||||||||||| Sbjct: 29803257 tccagttggtgcta-ggaggtgtggtccct 29803229 Score = 127 bits (64), Expect = 6e-26 Identities = 109/124 (87%) Strand = Plus / Minus Query: 370 gttgatgagatcctccacaagcttcggttctgctctttagctagttctattgcctctaat 429 |||||||| | |||||||||||||| || |||||| | |||| | |||||||||||| | Sbjct: 29803878 gttgatgaaaccctccacaagcttctattttgctctcttgctaatgctattgcctctagt 29803819 Query: 430 gttctcttggtcaccactacttcatgcattccagctaaacattcaccaccggtaagccat 489 ||||||||||| |||||||| |||||||||||||||||||| || ||||| ||||||||| Sbjct: 29803818 gttctcttggttaccactacctcatgcattccagctaaacactccccaccagtaagccat 29803759 Query: 490 tcca 493 |||| Sbjct: 29803758 tcca 29803755 Score = 95.6 bits (48), Expect = 2e-16 Identities = 108/128 (84%) Strand = Plus / Minus Query: 232 cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 291 |||||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct: 29804132 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 29804073 Query: 292 taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 351 ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| ||| Sbjct: 29804072 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 29804013 Query: 352 gcaatgtg 359 |||||||| Sbjct: 29804012 gcaatgtg 29804005 Score = 65.9 bits (33), Expect = 2e-07 Identities = 33/33 (100%) Strand = Plus / Minus Query: 702 cctccttcatcaaagaggtaaatgcatcctttg 734 ||||||||||||||||||||||||||||||||| Sbjct: 29802990 cctccttcatcaaagaggtaaatgcatcctttg 29802958
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2056_H01 Length = 123428 Score = 226 bits (114), Expect = 8e-56 Identities = 187/210 (89%), Gaps = 1/210 (0%) Strand = Plus / Minus Query: 495 ctgtttccctgactgaatgagaagacagccaacagggaccttcacctccatctttttacc 554 |||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| || Sbjct: 59782 ctgtttccctgattgaattagaagacagccaacagggaccttaacttccatctttttgcc 59723 Query: 555 attacttaaccaaatgttcaggcctggaaatctactacgaccgtgtatggtcaagaaatt 614 || |||| ||| ||||||||||||||||||||||| ||||| |||||||||| |||||| Sbjct: 59722 gttccttagccagatgttcaggcctggaaatctacttcgaccatgtatggtcaggaaatt 59663 Query: 615 aagatcataatggaacccagcaaacactgtgccctcagaaccgtgacgcagcagattact 674 ||||||||||||||||||||||| || |||||||||||||| || ||| || | ||| Sbjct: 59662 gagatcataatggaacccagcaaaaacagtgccctcagaaccatgccgctcaaggtcact 59603 Query: 675 tccagttggtgctagggaggtgtggtccct 704 |||||||||||||| ||||||||||||||| Sbjct: 59602 tccagttggtgcta-ggaggtgtggtccct 59574 Score = 127 bits (64), Expect = 6e-26 Identities = 109/124 (87%) Strand = Plus / Minus Query: 370 gttgatgagatcctccacaagcttcggttctgctctttagctagttctattgcctctaat 429 |||||||| | |||||||||||||| || |||||| | |||| | |||||||||||| | Sbjct: 60223 gttgatgaaaccctccacaagcttctattttgctctcttgctaatgctattgcctctagt 60164 Query: 430 gttctcttggtcaccactacttcatgcattccagctaaacattcaccaccggtaagccat 489 ||||||||||| |||||||| |||||||||||||||||||| || ||||| ||||||||| Sbjct: 60163 gttctcttggttaccactacctcatgcattccagctaaacactccccaccagtaagccat 60104 Query: 490 tcca 493 |||| Sbjct: 60103 tcca 60100 Score = 95.6 bits (48), Expect = 2e-16 Identities = 108/128 (84%) Strand = Plus / Minus Query: 232 cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 291 |||||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct: 60477 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 60418 Query: 292 taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 351 ||||||||||||| || ||||||||||||||||||||||||||| || || ||||| ||| Sbjct: 60417 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaagggttgcatcagaa 60358 Query: 352 gcaatgtg 359 |||||||| Sbjct: 60357 gcaatgtg 60350 Score = 65.9 bits (33), Expect = 2e-07 Identities = 33/33 (100%) Strand = Plus / Minus Query: 702 cctccttcatcaaagaggtaaatgcatcctttg 734 ||||||||||||||||||||||||||||||||| Sbjct: 59335 cctccttcatcaaagaggtaaatgcatcctttg 59303
>dbj|AP004047.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1191_G08 Length = 172832 Score = 226 bits (114), Expect = 8e-56 Identities = 187/210 (89%), Gaps = 1/210 (0%) Strand = Plus / Minus Query: 495 ctgtttccctgactgaatgagaagacagccaacagggaccttcacctccatctttttacc 554 |||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||| || Sbjct: 172416 ctgtttccctgattgaattagaagacagccaacagggaccttaacttccatctttttgcc 172357 Query: 555 attacttaaccaaatgttcaggcctggaaatctactacgaccgtgtatggtcaagaaatt 614 || |||| ||| ||||||||||||||||||||||| ||||| |||||||||| |||||| Sbjct: 172356 gttccttagccagatgttcaggcctggaaatctacttcgaccatgtatggtcaggaaatt 172297 Query: 615 aagatcataatggaacccagcaaacactgtgccctcagaaccgtgacgcagcagattact 674 ||||||||||||||||||||||| || |||||||||||||| || ||| || | ||| Sbjct: 172296 gagatcataatggaacccagcaaaaacagtgccctcagaaccatgccgctcaaggtcact 172237 Query: 675 tccagttggtgctagggaggtgtggtccct 704 |||||||||||||| ||||||||||||||| Sbjct: 172236 tccagttggtgcta-ggaggtgtggtccct 172208 Score = 107 bits (54), Expect = 5e-20 Identities = 72/78 (92%) Strand = Plus / Minus Query: 416 ctattgcctctaatgttctcttggtcaccactacttcatgcattccagctaaacattcac 475 |||||||||||| |||||||||||| |||||||| |||||||||||||||||||| || | Sbjct: 172811 ctattgcctctagtgttctcttggttaccactacctcatgcattccagctaaacactccc 172752 Query: 476 caccggtaagccattcca 493 |||| ||||||||||||| Sbjct: 172751 caccagtaagccattcca 172734 Score = 65.9 bits (33), Expect = 2e-07 Identities = 33/33 (100%) Strand = Plus / Minus Query: 702 cctccttcatcaaagaggtaaatgcatcctttg 734 ||||||||||||||||||||||||||||||||| Sbjct: 171969 cctccttcatcaaagaggtaaatgcatcctttg 171937
>gb|AF463836.1| Oryza sativa (japonica cultivar-group) transgenic plant p0841 integrated T-DNA(Ds), flanking sequence Length = 601 Score = 87.7 bits (44), Expect = 5e-14 Identities = 107/128 (83%) Strand = Plus / Plus Query: 232 cctttcagattgatcgccgagagctcttgttccacatactccccggcacatataggcgga 291 |||||||||||||| | || || || ||||| || || || || ||||| || || ||| Sbjct: 324 cctttcagattgattactgatagttcctgttcgacgtagtcgccagcacagattggtgga 383 Query: 292 taactatgagcattgggtgcttcagcaaagtggcccaatggcttgagcgtcgcatcggaa 351 ||||||||||||| || ||||||||||||||||||||||||||| | || ||||| ||| Sbjct: 384 taactatgagcatcggatgcttcagcaaagtggcccaatggcttaggggttgcatcagaa 443 Query: 352 gcaatgtg 359 |||||||| Sbjct: 444 gcaatgtg 451
>gb|AC010364.6| Homo sapiens chromosome 5 clone CTD-2042D5, complete sequence Length = 163400 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 628 aacccagcaaacactgtgccctc 650 ||||||||||||||||||||||| Sbjct: 26836 aacccagcaaacactgtgccctc 26858
>gb|AC010450.6|AC010450 Homo sapiens chromosome 5 clone CTD-2242D16, complete sequence Length = 108916 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Plus Query: 628 aacccagcaaacactgtgccctc 650 ||||||||||||||||||||||| Sbjct: 90056 aacccagcaaacactgtgccctc 90078
>gb|AC006406.1|AC006406 Homo sapiens, clone hRPK.25_A_1, complete sequence Length = 159115 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 628 aacccagcaaacactgtgccctc 650 ||||||||||||||||||||||| Sbjct: 135991 aacccagcaaacactgtgccctc 135969
>gb|BT013946.1| Lycopersicon esculentum clone 132969R, mRNA sequence Length = 1373 Score = 44.1 bits (22), Expect = 0.65 Identities = 79/98 (80%) Strand = Plus / Minus Query: 448 acttcatgcattccagctaaacattcaccaccggtaagccattccaactgtttccctgac 507 ||||||||||| ||||| | ||||| ||| |||| | |||||| | ||| || |||| | Sbjct: 944 acttcatgcatgccagccatgcattctccagcggtcaaccattctatctgctttcctgcc 885 Query: 508 tgaatgagaagacagccaacagggaccttcacctccat 545 ||||| || || || |||||||| |||||||| ||||| Sbjct: 884 tgaataaggaggcacccaacaggaaccttcacttccat 847 Score = 42.1 bits (21), Expect = 2.6 Identities = 36/41 (87%) Strand = Plus / Minus Query: 695 tgtggtccctccttcatcaaagaggtaaatgcatcctttga 735 |||||||||| || ||| || || ||||||||||||||||| Sbjct: 698 tgtggtccctgctgcattaaggaagtaaatgcatcctttga 658
>gb|AY110936.1| Zea mays CL47347_1 mRNA sequence Length = 722 Score = 44.1 bits (22), Expect = 0.65 Identities = 31/34 (91%) Strand = Plus / Plus Query: 343 gcatcggaagcaatgtgcgagaatagtgttgatg 376 ||||| ||||||||||||| ||| |||||||||| Sbjct: 43 gcatccgaagcaatgtgcgcgaacagtgttgatg 76 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,747,984 Number of Sequences: 3902068 Number of extensions: 5747984 Number of successful extensions: 102643 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 102564 Number of HSP's gapped (non-prelim): 52 length of query: 738 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 715 effective length of database: 17,143,297,704 effective search space: 12257457858360 effective search space used: 12257457858360 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
