ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3e19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALFC_ORYSA (Q40677) Fructose-bisphosphate aldolase, chloroplast ... 31 0.002
2ALFC_PEA (Q01516) Fructose-bisphosphate aldolase 1, chloroplast ... 30 1.5
3ALFC_SPIOL (P16096) Fructose-bisphosphate aldolase, chloroplast ... 26 2.7
4METX_COREF (Q8FRT0) Homoserine O-acetyltransferase (EC 2.3.1.31)... 28 7.3

>ALFC_ORYSA (Q40677) Fructose-bisphosphate aldolase, chloroplast precursor (EC|
           4.1.2.13) (ALDP)
          Length = 388

 Score = 31.2 bits (69), Expect(2) = 0.002
 Identities = 14/18 (77%), Positives = 14/18 (77%)
 Frame = -1

Query: 310 DGEAAAAKENMFVKXYSY 257
           DGEAA AKE MFVK Y Y
Sbjct: 371 DGEAAEAKEGMFVKNYVY 388



 Score = 27.3 bits (59), Expect(2) = 0.002
 Identities = 12/12 (100%), Positives = 12/12 (100%)
 Frame = -3

Query: 350 KANSLAQLGKYT 315
           KANSLAQLGKYT
Sbjct: 358 KANSLAQLGKYT 369



to top

>ALFC_PEA (Q01516) Fructose-bisphosphate aldolase 1, chloroplast precursor|
           (EC 4.1.2.13) (Fragment)
          Length = 356

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -1

Query: 313 GDGEAAAAKENMFVKXYSY 257
           GDGE+  AK+ +FVK YSY
Sbjct: 338 GDGESEEAKKELFVKGYSY 356



to top

>ALFC_SPIOL (P16096) Fructose-bisphosphate aldolase, chloroplast precursor (EC|
           4.1.2.13)
          Length = 394

 Score = 26.2 bits (56), Expect(2) = 2.7
 Identities = 11/12 (91%), Positives = 12/12 (100%)
 Frame = -3

Query: 350 KANSLAQLGKYT 315
           K+NSLAQLGKYT
Sbjct: 363 KSNSLAQLGKYT 374



 Score = 21.6 bits (44), Expect(2) = 2.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 313 GDGEAAAAKENMFVK 269
           G+GE+   K++MFVK
Sbjct: 375 GEGESEERKKDMFVK 389



to top

>METX_COREF (Q8FRT0) Homoserine O-acetyltransferase (EC 2.3.1.31) (Homoserine|
           O-trans-acetylase) (Homoserine transacetylase) (HTA)
          Length = 377

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 245 ADGSVAVXLDEHVLFGSCGLAVXWC 319
           ADGS  V L EH L G    A  WC
Sbjct: 43  ADGSTNVVLIEHALTGDSNAADWWC 67


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,607,575
Number of Sequences: 219361
Number of extensions: 657258
Number of successful extensions: 1217
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1217
length of database: 80,573,946
effective HSP length: 92
effective length of database: 60,392,734
effective search space used: 1449425616
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top