>NIP29_YEAST (P33419) Protein NIP29|
          Length = 253

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 25/90 (27%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
 Frame = -2

Query: 479 KALSHLHKQSF--NLSFLKNRR*PRKQQRVSSPVDCTNDPGFRADRKLDERIIGPWFQQN 306
           +AL  L +++F  N S L N++  R Q+R+SSP+   +  G   DRK+   +     +Q 
Sbjct: 28  EALKKLREENFSSNTSELGNKKHYRAQERMSSPLHRLSPTGKSDDRKVKSPLDDKLRRQL 87

Query: 305 FPRY*RTSDPKETRFAMLAARATDLHKLRR 216
                R   P  + + M     ++L ++RR
Sbjct: 88  REGNTRLPPPPFSSYGMPPTNRSNLDRIRR 117

>RISB_BDEBA (P61720) 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) (DMRL|
           synthase) (Lumazine synthase) (Riboflavin synthase beta
           chain)
          Length = 179

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 13/27 (48%), Positives = 19/27 (70%)
 Frame = -3

Query: 430 RIGGDHGSSNESQAQWTVQMIQASEQI 350
           R GGDHG+  E  AQ T++MI  +++I
Sbjct: 115 RAGGDHGNKGEEAAQVTMEMIGLTQEI 141

>CAAL_ECOLI (P77213) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 HMRICSRNSRPMATRQRRTICENQYYLRSL 228
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLEICGGGTHPFQKWQRQEVCDNERYQRTL 120

>CAAL_ECOL6 (Q8FK30) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 HMRICSRNSRPMATRQRRTICENQYYLRSL 228
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLEICGGGTHPFQKWQRQEVCDNERYQRTL 120

>CAAL_ECO57 (Q8XBX1) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 HMRICSRNSRPMATRQRRTICENQYYLRSL 228
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLEICGGGTHPFQKWQRQEVCDNERYQRTL 120

>CAAL_SHIFL (Q83M14) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 HMRICSRNSRPMATRQRRTICENQYYLRSL 228
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLEICGGGTPPFQKWQRQEVCDNERYQRTL 120

>CAAL_SALTY (Q8ZR41) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 HMRICSRNSRPMATRQRRTICENQYYLRSL 228
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLGICGGGTHPFQKWQRQEVCDNERYQRTL 120

>CAAL_SALTI (Q8Z8M0) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 HMRICSRNSRPMATRQRRTICENQYYLRSL 228
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLGICGGGTHPFQKWQRQEVCDNERYQRTL 120

>CAAL_SALPA (Q5PMF1) Carboxylate-amine ligase ybdK (EC 6.3.-.-)|
          Length = 372

 Score = 30.4 bits (67), Expect = 4.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 139 HMRICSRNSRPMATRQRRTICENQYYLRSL 228
           H+ IC   + P    QR+ +C+N+ Y R+L
Sbjct: 91  HLGICGGGTHPFQKWQRQEVCDNERYQRTL 120

>VG05_VARV (P32995) Protein G5|
          Length = 434

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 177 GHWP*VSRTNTHMPYFISIKSHGKMIKVIEEILK 76
           G WP +  T+     F S+ +H KMIK + ++ K
Sbjct: 187 GEWPLIISTDQDTMLFASVDNHPKMIKNLTQLFK 220

>AL1B2_BOVIN (P52476) Aldehyde dehydrogenase X, mitochondrial (EC 1.2.1.3)|
           (ALDHX) (ALDH class 2) (Fragment)
          Length = 126

 Score = 29.3 bits (64), Expect = 9.2
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -2

Query: 458 KQSFNLSFLKNRR*PRKQQRVSSPVDCTNDPGFRADRKLDERIIG 324
           ++S    FL+      KQ+RV +P D     G + DR+  ERI+G
Sbjct: 39  EESIYDEFLERTVEKAKQRRVGNPFDLDTQQGPQVDRERFERILG 83


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,336,094
Number of Sequences: 219361
Number of extensions: 1512803
Number of successful extensions: 3086
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3085
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5310515667
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)