ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3e18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC004629.1| Homo sapiens chromosome 5, BAC clone 87L18 (LBNL ... 46 0.13
2emb|AL691512.11| Mouse DNA sequence from clone RP23-440L5 on chr... 46 0.13
3gb|AC106781.2| Homo sapiens chromosome 5 clone RP11-346A9, compl... 46 0.13
4gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromoso... 46 0.13
5emb|CR735143.13| Zebrafish DNA sequence from clone CH211-244P16 ... 44 0.53
6gb|AC091843.3| Homo sapiens chromosome 5 clone CTD-2185O23, comp... 44 0.53
7emb|BX663519.12| Zebrafish DNA sequence from clone DKEY-182M1 in... 44 0.53
8gb|AC010928.7|AC010928 Homo sapiens chromosome 18, clone RP11-32... 44 0.53
9emb|CR933780.12| Zebrafish DNA sequence from clone DKEY-60F6 in ... 44 0.53
10gb|AC169385.2| Mus musculus BAC clone RP23-247C1 from chromosome... 42 2.1
11gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, com... 42 2.1
12emb|CR376860.38| Zebrafish DNA sequence from clone DKEY-111H22 i... 42 2.1
13emb|Z81115.1|CET05D4 Caenorhabditis elegans Cosmid T05D4, comple... 42 2.1
14emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on ch... 42 2.1
15gb|AC087173.5| Homo sapiens chromosome 8, clone RP11-713C9, comp... 42 2.1
16gb|AC087366.5| Homo sapiens chromosome 8, clone RP11-621J21, com... 42 2.1
17gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosom... 42 2.1
18gb|AC154474.2| Mus musculus BAC clone RP24-122P10 from chromosom... 42 2.1
19gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosom... 42 2.1
20gb|AC004704.2|AC004704 Homo sapiens chromosome 4 clone B341C20 m... 42 2.1
21emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in... 42 2.1
22gb|AC116763.11| Mus musculus chromosome 5, clone RP23-385G21, co... 42 2.1
23emb|BX001051.29| Zebrafish DNA sequence from clone DKEYP-68F9 in... 42 2.1
24gb|AC119269.9| Mus musculus chromosome 5, clone RP24-324B22, com... 40 8.2
25gb|AC149315.1| Phakopsora pachyrhizi clone JGIAFNA-101K13, compl... 40 8.2
26gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, comp... 40 8.2
27emb|CR848817.8| Zebrafish DNA sequence from clone DKEY-211I2 in ... 40 8.2
28gb|AC133087.3| Mus musculus BAC clone RP24-135I21 from chromosom... 40 8.2
29gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosom... 40 8.2
30gb|AC121774.3| Mus musculus BAC clone RP23-350E1 from chromosome... 40 8.2
31gb|AC114822.7| Mus musculus BAC clone RP23-113A12 from 2, comple... 40 8.2
32ref|XM_547674.2| PREDICTED: Canis familiaris similar to Thioredo... 40 8.2
33emb|AL512587.13| Mouse DNA sequence from clone RP23-467P7 on chr... 40 8.2
34ref|XM_736781.1| Plasmodium chabaudi chabaudi mitochondrial carr... 40 8.2
35gb|AC140914.20| Medicago truncatula clone mth2-18h17, complete s... 40 8.2
36emb|AL031779.5|HS445N2 Human DNA sequence from clone RP3-445N2 o... 40 8.2
37emb|AL590100.6| Human DNA sequence from clone RP11-49O3 on chrom... 40 8.2
38emb|AL390763.13| Human DNA sequence from clone RP11-264E18 on ch... 40 8.2
39gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 8.2
40emb|AL133549.11| Human DNA sequence from clone RP11-32F11 on chr... 40 8.2
41emb|AL035251.11|HS705O1 Human DNA sequence from clone RP4-705O1 ... 40 8.2
42gb|AC158752.5| Mus musculus chromosome 15, clone RP24-132H17, co... 40 8.2
43gb|AC165053.2| Phakopsora pachyrhizi clone JGIAFNA-1305N22, comp... 40 8.2
44gb|AC158757.6| Mus musculus chromosome 5, clone RP23-64D3, compl... 40 8.2
45emb|BX470081.7| Zebrafish DNA sequence from clone RP71-84P16, co... 40 8.2
46gb|AC114322.2| Homo sapiens chromosome 5 clone RP11-74D3, comple... 40 8.2
47gb|AC114945.2| Homo sapiens chromosome 5 clone CTD-2604I2, compl... 40 8.2
48ref|NM_057784.4| Drosophila melanogaster Origin recognition comp... 40 8.2
49gb|AY089590.1| Drosophila melanogaster RE16687 full insert cDNA 40 8.2
50gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor ... 40 8.2
51gb|AC022118.5| Homo sapiens chromosome 5 clone CTC-548H10, compl... 40 8.2
52emb|BX510366.5| Zebrafish DNA sequence from clone DKEY-189P24 in... 40 8.2
53gb|AC016623.6| Homo sapiens chromosome 5 clone CTD-2345N17, comp... 40 8.2
54emb|BX682556.5| Zebrafish DNA sequence from clone DKEY-105I19 in... 40 8.2
55gb|AC004668.1| Homo sapiens BAC clone CTA-276O3 from 7, complete... 40 8.2
56gb|AC073536.5| Homo sapiens chromosome 5 clone CTD-2068E4, compl... 40 8.2
57dbj|AK035316.1| Mus musculus adult male urinary bladder cDNA, RI... 40 8.2
58gb|AC092236.1|AC092236 Drosophila melanogaster, chromosome 2L, r... 40 8.2
59gb|AC092223.1|AC092223 Drosophila melanogaster, chromosome 2L, r... 40 8.2
60dbj|AK048812.1| Mus musculus 0 day neonate cerebellum cDNA, RIKE... 40 8.2
61dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
62gb|AC115485.3| Homo sapiens chromosome 8, clone GS1-57L11, compl... 40 8.2
63emb|BX470215.5| Mouse DNA sequence from clone RP24-558L5 on chro... 40 8.2
64emb|AL132862.1|CEY73F8A Caenorhabditis elegans YAC Y73F8A, compl... 40 8.2
65gb|AE003641.3| Drosophila melanogaster chromosome 2L, section 50... 40 8.2
66dbj|AP002478.3| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 8.2
67gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, comp... 40 8.2
68gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
69emb|AL732638.6|CNS08C9D Oryza sativa chromosome 12, . Partial se... 40 8.2
70emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa... 40 8.2
71gb|AC149341.2| Phakopsora pachyrhizi clone JGIAFNA-25D19, comple... 40 8.2
72emb|CT025734.8| Mouse DNA sequence from clone RP24-375J21 on chr... 40 8.2
73emb|CT025681.8| Mouse DNA sequence from clone RP24-325P17 on chr... 40 8.2
74emb|AL929043.7| Mouse DNA sequence from clone RP23-58H6 on chrom... 40 8.2 
>gb|AC004629.1| Homo sapiens chromosome 5, BAC clone 87L18 (LBNL H97), complete sequence
          Length = 116019

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 535    gcaccatgtgaagggggcatgca 557
              |||||||||||||||||||||||
Sbjct: 109804 gcaccatgtgaagggggcatgca 109782
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>emb|AL691512.11| Mouse DNA sequence from clone RP23-440L5 on chromosome 4 Contains a CpG
             island, complete sequence
          Length = 206422

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 24    ttttaaaaacacttacatttaaa 46
             |||||||||||||||||||||||
Sbjct: 79444 ttttaaaaacacttacatttaaa 79466
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>gb|AC106781.2| Homo sapiens chromosome 5 clone RP11-346A9, complete sequence
          Length = 179284

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 535   gcaccatgtgaagggggcatgca 557
             |||||||||||||||||||||||
Sbjct: 11216 gcaccatgtgaagggggcatgca 11238
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>gb|AC145927.3| Gallus gallus BAC clone CH261-29M22 from chromosome unknown, complete
              sequence
          Length = 227692

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 442    aggttgaagctttgtttatgtagatga 468
              |||| ||||||||||||||||||||||
Sbjct: 197219 aggtagaagctttgtttatgtagatga 197193
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>emb|CR735143.13| Zebrafish DNA sequence from clone CH211-244P16 in linkage group 5,
             complete sequence
          Length = 147626

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 23    tttttaaaaacacttacatttaaaaa 48
             |||||||||||| |||||||||||||
Sbjct: 77135 tttttaaaaacatttacatttaaaaa 77110
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>gb|AC091843.3| Homo sapiens chromosome 5 clone CTD-2185O23, complete sequence
          Length = 177056

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 14     ctagataaatttttaaaaacacttac 39
              |||| |||||||||||||||||||||
Sbjct: 130572 ctaggtaaatttttaaaaacacttac 130547
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>emb|BX663519.12| Zebrafish DNA sequence from clone DKEY-182M1 in linkage group 15,
              complete sequence
          Length = 164720

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 23     tttttaaaaacacttacatttaaaaa 48
              |||||||||||||||| |||||||||
Sbjct: 132902 tttttaaaaacacttatatttaaaaa 132877
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>gb|AC010928.7|AC010928 Homo sapiens chromosome 18, clone RP11-325K19, complete sequence
          Length = 213552

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 14     ctagataaatttttaaaaacacttac 39
              |||| |||||||||||||||||||||
Sbjct: 163704 ctaggtaaatttttaaaaacacttac 163729
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>emb|CR933780.12| Zebrafish DNA sequence from clone DKEY-60F6 in linkage group 5,
             complete sequence
          Length = 227454

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 23    tttttaaaaacacttacatttaaaaa 48
             |||||||||||| |||||||||||||
Sbjct: 75581 tttttaaaaacatttacatttaaaaa 75606
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>gb|AC169385.2| Mus musculus BAC clone RP23-247C1 from chromosome 16, complete sequence
          Length = 206814

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 454    tgtttatgtagatgagagagg 474
              |||||||||||||||||||||
Sbjct: 135791 tgtttatgtagatgagagagg 135771
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>gb|AC116412.19| Mus musculus chromosome 5, clone RP24-82A20, complete sequence
          Length = 191823

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 26     ttaaaaacacttacatttaaaaacc 50
              |||||||||||| ||||||||||||
Sbjct: 180554 ttaaaaacactttcatttaaaaacc 180578
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>emb|CR376860.38| Zebrafish DNA sequence from clone DKEY-111H22 in linkage group 8,
             complete sequence
          Length = 195545

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 223   agtttatgtaaatctgtagct 243
             |||||||||||||||||||||
Sbjct: 32795 agtttatgtaaatctgtagct 32815
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>emb|Z81115.1|CET05D4 Caenorhabditis elegans Cosmid T05D4, complete sequence
          Length = 32612

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 24   ttttaaaaacacttacatttaaaaa 48
            |||||||||||||||||||| ||||
Sbjct: 8796 ttttaaaaacacttacatttcaaaa 8820
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>emb|AL592402.12| Human DNA sequence from clone RP11-554K11 on chromosome 1 Contains a
             processed pseudogene similar to ribosomal protein L31
             (RPL31), complete sequence
          Length = 200461

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 417   tcacctcctattcttcagaaa 437
             |||||||||||||||||||||
Sbjct: 86603 tcacctcctattcttcagaaa 86623
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>gb|AC087173.5| Homo sapiens chromosome 8, clone RP11-713C9, complete sequence
          Length = 160250

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 18     ataaatttttaaaaacactta 38
              |||||||||||||||||||||
Sbjct: 143815 ataaatttttaaaaacactta 143835
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>gb|AC087366.5| Homo sapiens chromosome 8, clone RP11-621J21, complete sequence
          Length = 160454

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 18    ataaatttttaaaaacactta 38
             |||||||||||||||||||||
Sbjct: 31772 ataaatttttaaaaacactta 31792
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>gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosome 16, complete
             sequence
          Length = 181697

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 454   tgtttatgtagatgagagagg 474
             |||||||||||||||||||||
Sbjct: 36649 tgtttatgtagatgagagagg 36629
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>gb|AC154474.2| Mus musculus BAC clone RP24-122P10 from chromosome 16, complete
             sequence
          Length = 223585

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 354   tgctctgaagcctggatcatt 374
             |||||||||||||||||||||
Sbjct: 86831 tgctctgaagcctggatcatt 86811
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>gb|AC160932.3| Mus musculus BAC clone RP24-275L14 from chromosome 12, complete
             sequence
          Length = 177886

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 340   tctaattttctatctgctctg 360
             |||||||||||||||||||||
Sbjct: 32134 tctaattttctatctgctctg 32154
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>gb|AC004704.2|AC004704 Homo sapiens chromosome 4 clone B341C20 map 4q25, complete sequence
          Length = 134187

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 24    ttttaaaaacacttacattta 44
             |||||||||||||||||||||
Sbjct: 66228 ttttaaaaacacttacattta 66208
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>emb|BX005011.6| Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23,
              complete sequence
          Length = 178148

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 27     taaaaacacttacatttaaaa 47
              |||||||||||||||||||||
Sbjct: 141653 taaaaacacttacatttaaaa 141673
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>gb|AC116763.11| Mus musculus chromosome 5, clone RP23-385G21, complete sequence
          Length = 196521

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 266    gggtttctttgggatcagaag 286
              |||||||||||||||||||||
Sbjct: 124530 gggtttctttgggatcagaag 124510
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>emb|BX001051.29| Zebrafish DNA sequence from clone DKEYP-68F9 in linkage group 9, complete
              sequence
          Length = 213486

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 21     aatttttaaaaacacttacatttaa 45
              ||||||| |||||||||||||||||
Sbjct: 201994 aattttttaaaacacttacatttaa 202018
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>gb|AC119269.9| Mus musculus chromosome 5, clone RP24-324B22, complete sequence
          Length = 172282

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 117   actttattgatataaagtag 136
             ||||||||||||||||||||
Sbjct: 10600 actttattgatataaagtag 10619
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>gb|AC149315.1| Phakopsora pachyrhizi clone JGIAFNA-101K13, complete sequence
          Length = 34485

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 451   ctttgtttatgtagatgaga 470
             ||||||||||||||||||||
Sbjct: 24243 ctttgtttatgtagatgaga 24262
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>gb|AC109170.10| Mus musculus chromosome 8, clone RP23-87B3, complete sequence
          Length = 274518

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     taaatttttaaaaacactta 38
              ||||||||||||||||||||
Sbjct: 145348 taaatttttaaaaacactta 145367
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>emb|CR848817.8| Zebrafish DNA sequence from clone DKEY-211I2 in linkage group 16,
             complete sequence
          Length = 54602

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 5     tatgtagtcctagataaatttttaaaaa 32
             ||||| |||||||||| |||||||||||
Sbjct: 44629 tatgttgtcctagatacatttttaaaaa 44656
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>gb|AC133087.3| Mus musculus BAC clone RP24-135I21 from chromosome 13, complete
             sequence
          Length = 157768

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 24    ttttaaaaacacttacatttaaaa 47
             |||||||||||||| |||||||||
Sbjct: 31854 ttttaaaaacactttcatttaaaa 31877
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>gb|AC123794.4| Mus musculus BAC clone RP24-315P14 from chromosome 8, complete sequence
          Length = 187246

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 19     taaatttttaaaaacactta 38
              ||||||||||||||||||||
Sbjct: 154649 taaatttttaaaaacactta 154668
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>gb|AC121774.3| Mus musculus BAC clone RP23-350E1 from chromosome 5, complete sequence
          Length = 191733

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    actttattgatataaagtag 136
              ||||||||||||||||||||
Sbjct: 148900 actttattgatataaagtag 148919
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>gb|AC114822.7| Mus musculus BAC clone RP23-113A12 from 2, complete sequence
          Length = 209762

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     aaacacttacatttaaaaac 49
              ||||||||||||||||||||
Sbjct: 158295 aaacacttacatttaaaaac 158314
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>ref|XM_547674.2| PREDICTED: Canis familiaris similar to Thioredoxin domain
           containing protein 2 (Spermatid-specific thioredoxin-1)
           (Sptrx-1) (LOC490552), mRNA
          Length = 1407

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 418 cacctcctattcttcagaaa 437
           ||||||||||||||||||||
Sbjct: 600 cacctcctattcttcagaaa 619
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>emb|AL512587.13| Mouse DNA sequence from clone RP23-467P7 on chromosome 2, complete
              sequence
          Length = 180204

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 483    gcaaagtcatgtgtgatgca 502
              ||||||||||||||||||||
Sbjct: 137512 gcaaagtcatgtgtgatgca 137493
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>ref|XM_736781.1| Plasmodium chabaudi chabaudi mitochondrial carrier protein,
           (PC000568.00.0) partial mRNA
          Length = 2304

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 21  aatttttaaaaacacttacattta 44
           |||||||||||||| |||||||||
Sbjct: 436 aatttttaaaaacatttacattta 413
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>gb|AC140914.20| Medicago truncatula clone mth2-18h17, complete sequence
          Length = 129792

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 30    aaacacttacatttaaaaac 49
             ||||||||||||||||||||
Sbjct: 25587 aaacacttacatttaaaaac 25568
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>emb|AL031779.5|HS445N2 Human DNA sequence from clone RP3-445N2 on chromosome 6p12.1-21.1
             Contains the 5' end of the COL21A1 gene for collagen, type
             XXI, alpha 1 (collagen XXI, collagen, type XX, alpha 1,
             COLA1L, COL20A1, DKFZp564B052) and part of a novel gene,
             complete sequence
          Length = 101010

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 515   ccctttgaacctggagggtt 534
             ||||||||||||||||||||
Sbjct: 59942 ccctttgaacctggagggtt 59961
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>emb|AL590100.6| Human DNA sequence from clone RP11-49O3 on chromosome 13 Contains a CpG
             island, complete sequence
          Length = 43138

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 25    tttaaaaacacttacatttaaaaa 48
             ||||||| ||||||||||||||||
Sbjct: 27713 tttaaaatcacttacatttaaaaa 27690
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>emb|AL390763.13| Human DNA sequence from clone RP11-264E18 on chromosome 10 Contains a
            novel gene, complete sequence
          Length = 162044

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 21   aatttttaaaaacacttaca 40
            ||||||||||||||||||||
Sbjct: 8774 aatttttaaaaacacttaca 8755
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 160    aactcacggccaatggccacaagg 183
              ||||| ||||||||||||||||||
Sbjct: 595040 aactcgcggccaatggccacaagg 595063
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>emb|AL133549.11| Human DNA sequence from clone RP11-32F11 on chromosome 9p24.1-24.3
             Contains the 3'end of the RFX3 gene for regulatory factor
             X 3 (influences HLA class II expression), a novel gene and
             a CpG island, complete sequence
          Length = 162237

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    cctagataaatttttaaaaa 32
             ||||||||||||||||||||
Sbjct: 12076 cctagataaatttttaaaaa 12095
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>emb|AL035251.11|HS705O1 Human DNA sequence from clone RP4-705O1 on chromosome 20q11.2 Contains
             a novel gene, complete sequence
          Length = 161888

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 377   tacagtccactgggcttgag 396
             ||||||||||||||||||||
Sbjct: 97925 tacagtccactgggcttgag 97906
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>gb|AC158752.5| Mus musculus chromosome 15, clone RP24-132H17, complete sequence
          Length = 159194

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    aaaacacttacatttaaaaa 48
             ||||||||||||||||||||
Sbjct: 72680 aaaacacttacatttaaaaa 72661
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>gb|AC165053.2| Phakopsora pachyrhizi clone JGIAFNA-1305N22, complete sequence
          Length = 40161

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 451   ctttgtttatgtagatgaga 470
             ||||||||||||||||||||
Sbjct: 29054 ctttgtttatgtagatgaga 29035
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>gb|AC158757.6| Mus musculus chromosome 5, clone RP23-64D3, complete sequence
          Length = 247058

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     tagataaatttttaaaaaca 34
              ||||||||||||||||||||
Sbjct: 173890 tagataaatttttaaaaaca 173909
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>emb|BX470081.7| Zebrafish DNA sequence from clone RP71-84P16, complete sequence
          Length = 84546

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    tttttaaaaacacttacatttaaa 46
             |||||||||||||| |||||||||
Sbjct: 40649 tttttaaaaacactaacatttaaa 40672
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>gb|AC114322.2| Homo sapiens chromosome 5 clone RP11-74D3, complete sequence
          Length = 133348

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    cttaagaatttcctcaataa 95
             ||||||||||||||||||||
Sbjct: 22306 cttaagaatttcctcaataa 22287
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>gb|AC114945.2| Homo sapiens chromosome 5 clone CTD-2604I2, complete sequence
          Length = 129575

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    cttaagaatttcctcaataa 95
             ||||||||||||||||||||
Sbjct: 13892 cttaagaatttcctcaataa 13911
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>ref|NM_057784.4| Drosophila melanogaster Origin recognition complex subunit 5
           CG7833-RA (Orc5), mRNA
          Length = 1672

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 41  tttaaaaaccgaggaagtattttc 64
           |||| |||||||||||||||||||
Sbjct: 84  tttataaaccgaggaagtattttc 107
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>gb|AY089590.1| Drosophila melanogaster RE16687 full insert cDNA
          Length = 1684

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 41  tttaaaaaccgaggaagtattttc 64
           |||| |||||||||||||||||||
Sbjct: 85  tttataaaccgaggaagtattttc 108
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>gb|AF438327.1| Homo sapiens alpha 1 type XXI collagen precursor (COL21A1) gene,
             complete cds, alternatively spliced
          Length = 381696

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 515   ccctttgaacctggagggtt 534
             ||||||||||||||||||||
Sbjct: 36189 ccctttgaacctggagggtt 36208
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>gb|AC022118.5| Homo sapiens chromosome 5 clone CTC-548H10, complete sequence
          Length = 104094

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 74    ctcttaagaatttcctcaat 93
             ||||||||||||||||||||
Sbjct: 77772 ctcttaagaatttcctcaat 77791
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>emb|BX510366.5| Zebrafish DNA sequence from clone DKEY-189P24 in linkage group 5,
            complete sequence
          Length = 179350

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 413  gtggtcacctcctattcttc 432
            ||||||||||||||||||||
Sbjct: 8381 gtggtcacctcctattcttc 8400
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>gb|AC016623.6| Homo sapiens chromosome 5 clone CTD-2345N17, complete sequence
          Length = 153823

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aacacttacatttaaaaacc 50
             ||||||||||||||||||||
Sbjct: 80024 aacacttacatttaaaaacc 80043
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>emb|BX682556.5| Zebrafish DNA sequence from clone DKEY-105I19 in linkage group 3,
              complete sequence
          Length = 244555

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     tttttaaaaacacttacatttaaa 46
              |||||||||||||| |||||||||
Sbjct: 184556 tttttaaaaacactaacatttaaa 184579
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>gb|AC004668.1| Homo sapiens BAC clone CTA-276O3 from 7, complete sequence
          Length = 112661

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 28    aaaaacacttacatttaaaa 47
             ||||||||||||||||||||
Sbjct: 25855 aaaaacacttacatttaaaa 25874
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>gb|AC073536.5| Homo sapiens chromosome 5 clone CTD-2068E4, complete sequence
          Length = 116993

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 31    aacacttacatttaaaaacc 50
             ||||||||||||||||||||
Sbjct: 77079 aacacttacatttaaaaacc 77098
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>dbj|AK035316.1| Mus musculus adult male urinary bladder cDNA, RIKEN full-length
           enriched library, clone:9530014F03
           product:unclassifiable, full insert sequence
          Length = 2455

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  tagataaatttttaaaaaca 34
           ||||||||||||||||||||
Sbjct: 677 tagataaatttttaaaaaca 658
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>gb|AC092236.1|AC092236 Drosophila melanogaster, chromosome 2L, region 34D-34D, BAC clone
              BACR30I21, complete sequence
          Length = 161682

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 41     tttaaaaaccgaggaagtattttc 64
              |||| |||||||||||||||||||
Sbjct: 159930 tttataaaccgaggaagtattttc 159953
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>gb|AC092223.1|AC092223 Drosophila melanogaster, chromosome 2L, region 34D-35X, BAC clone
             BACR16P12, complete sequence
          Length = 171598

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 41    tttaaaaaccgaggaagtattttc 64
             |||| |||||||||||||||||||
Sbjct: 27073 tttataaaccgaggaagtattttc 27096
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>dbj|AK048812.1| Mus musculus 0 day neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:C230071P17 product:hypothetical
            protein, full insert sequence
          Length = 4525

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 483  gcaaagtcatgtgtgatgca 502
            ||||||||||||||||||||
Sbjct: 2120 gcaaagtcatgtgtgatgca 2101
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 14      ctagataaatttttaaaaac 33
               ||||||||||||||||||||
Sbjct: 4578046 ctagataaatttttaaaaac 4578027



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 36      ttacatttaaaaaccgaggaagtattttcttt 67
               ||||||| ||| || |||||||||||||||||
Sbjct: 3758293 ttacattaaaatacggaggaagtattttcttt 3758262
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>gb|AC115485.3| Homo sapiens chromosome 8, clone GS1-57L11, complete sequence
          Length = 169622

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     ataaatttttaaaaacactt 37
              ||||||||||||||||||||
Sbjct: 144829 ataaatttttaaaaacactt 144848
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>emb|BX470215.5| Mouse DNA sequence from clone RP24-558L5 on chromosome X, complete
              sequence
          Length = 137502

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     caataacttttatcattttg 109
              ||||||||||||||||||||
Sbjct: 113547 caataacttttatcattttg 113566
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>emb|AL132862.1|CEY73F8A Caenorhabditis elegans YAC Y73F8A, complete sequence
          Length = 322774

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 20     aaatttttaaaaacacttacatttaaaa 47
              ||||| ||||||||| ||||||||||||
Sbjct: 137550 aaattattaaaaacaattacatttaaaa 137523
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>gb|AE003641.3| Drosophila melanogaster chromosome 2L, section 50 of 83 of the complete
              sequence
          Length = 304772

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 41     tttaaaaaccgaggaagtattttc 64
              |||| |||||||||||||||||||
Sbjct: 176445 tttataaaccgaggaagtattttc 176468
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>dbj|AP002478.3| Homo sapiens genomic DNA, chromosome 18 clone:RP11-874J12, complete
             sequence
          Length = 226147

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 20    aaatttttaaaaacacttacattt 43
             ||||||||||||||| ||||||||
Sbjct: 72402 aaatttttaaaaacatttacattt 72379
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>gb|AC122763.9| Mus musculus chromosome 19, clone RP24-68F2, complete sequence
          Length = 176325

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 422    tcctattcttcagaaagctgaggttgaa 449
              |||||| |||||| ||||||||||||||
Sbjct: 117024 tcctatacttcaggaagctgaggttgaa 116997
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 14      ctagataaatttttaaaaac 33
               ||||||||||||||||||||
Sbjct: 4578027 ctagataaatttttaaaaac 4578008



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 36      ttacatttaaaaaccgaggaagtattttcttt 67
               ||||||| ||| || |||||||||||||||||
Sbjct: 3758267 ttacattaaaatacggaggaagtattttcttt 3758236
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>emb|AL732638.6|CNS08C9D Oryza sativa chromosome 12, . Partial sequence from BAC OSJNBa0010K22
             of library OSJNBa from chromosome 12 of cultivar
             Nipponbare of ssp. japonica of Oryza sativa (rice),
             complete sequence
          Length = 92728

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 36    ttacatttaaaaaccgaggaagtattttcttt 67
             ||||||| ||| || |||||||||||||||||
Sbjct: 81752 ttacattaaaatacggaggaagtattttcttt 81783
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>emb|AL928749.4|CNS08CBM Oryza sativa chromosome 12, . BAC OSJNBa0002O20 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129155

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 14    ctagataaatttttaaaaac 33
             ||||||||||||||||||||
Sbjct: 26732 ctagataaatttttaaaaac 26751
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>gb|AC149341.2| Phakopsora pachyrhizi clone JGIAFNA-25D19, complete sequence
          Length = 38997

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 451  ctttgtttatgtagatgaga 470
            ||||||||||||||||||||
Sbjct: 3334 ctttgtttatgtagatgaga 3353
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>emb|CT025734.8| Mouse DNA sequence from clone RP24-375J21 on chromosome 14, complete
              sequence
          Length = 187933

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 459    atgtagatgagagagggcct 478
              ||||||||||||||||||||
Sbjct: 157299 atgtagatgagagagggcct 157280
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>emb|CT025681.8| Mouse DNA sequence from clone RP24-325P17 on chromosome 14, complete
              sequence
          Length = 205581

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 410    tccgtggtcacctcctattcttca 433
              ||||||||| ||||||||||||||
Sbjct: 189140 tccgtggtctcctcctattcttca 189117
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>emb|AL929043.7| Mouse DNA sequence from clone RP23-58H6 on chromosome 2, complete
             sequence
          Length = 164834

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    aaacacttacatttaaaaac 49
             ||||||||||||||||||||
Sbjct: 62307 aaacacttacatttaaaaac 62326


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,487,674
Number of Sequences: 3902068
Number of extensions: 6487674
Number of successful extensions: 143197
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 142918
Number of HSP's gapped (non-prelim): 279
length of query: 603
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 580
effective length of database: 17,143,297,704
effective search space: 9943112668320
effective search space used: 9943112668320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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