ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3e17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
2dbj|AP005296.5| Oryza sativa (japonica cultivar-group) genomic D... 96 1e-16
3dbj|AK068892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
4dbj|AK067125.1| Oryza sativa (japonica cultivar-group) cDNA clon... 96 1e-16
5dbj|AK059690.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 6e-16
6gb|BT017025.1| Zea mays clone EK07D2312F09.c mRNA sequence 68 3e-08
7gb|AY596550.1| Saccharum officinarum clone SCCCRZ1001B01, comple... 64 5e-07
8gb|BT016701.1| Zea mays clone Contig534 mRNA sequence 48 0.030
9gb|AY105375.1| Zea mays PCO146209 mRNA sequence 48 0.030
10emb|AL672186.7| Mouse DNA sequence from clone RP23-42G2 on chrom... 42 1.9
11ref|XM_540611.2| PREDICTED: Canis familiaris similar to solute c... 40 7.3
12gb|BC056074.1| Xenopus laevis dimethylarginine dimethylaminohydr... 40 7.3
13gb|AC146076.2| Pan troglodytes BAC clone RP43-15J5 from 7, compl... 40 7.3
14emb|BX248308.11| Zebrafish DNA sequence from clone DKEY-247M21 i... 40 7.3
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
16gb|AC005674.11|AC005674 Homo sapiens chromosome 4 clone RP11-448... 40 7.3
17gb|AC036103.8|AC036103 Homo sapiens chromosome 15 clone CTD-2610... 40 7.3
18gb|AC125421.9| Homo sapiens chromosome 17, clone CTD-2532D12, co... 40 7.3
19gb|AC084693.2|AC084693 Homo sapiens chromosome 15 clone RP11-35K... 40 7.3
20gb|AC007040.2|AC007040 Homo sapiens BAC clone RP11-298H3 from 2,... 40 7.3
21gb|AC137735.5| Homo sapiens chromosome 17, clone CTD-2582D11, co... 40 7.3
22gb|AY190936.1| Drosophila erecta clone DERF01_42_K12 (D1471) gen... 40 7.3
23dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
24dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
25emb|BX255933.7| Zebrafish DNA sequence from clone DKEY-38L7 in l... 40 7.3
26emb|CR956639.4| Pig DNA sequence from clone CH242-279P20 on chro... 40 7.3
27emb|AL669938.9| Mouse DNA sequence from clone RP23-264N2 on chro... 40 7.3 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 115/136 (84%), Gaps = 6/136 (4%)
 Strand = Plus / Plus

                                                                            
Query: 393      ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 452
                |||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct: 22519005 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 22519064

                                                                            
Query: 453      gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 512
                ||||||| | |   | ||||||||| |||   |||||||||||||||| |  |||| |||
Sbjct: 22519065 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 22519118

                                
Query: 513      tgaccccatttgctgg 528
                 | |||||||||||||
Sbjct: 22519119 cggccccatttgctgg 22519134



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 192      ttcagctgtaggaaacaacat 212
                |||||||||||||||||||||
Sbjct: 22518800 ttcagctgtaggaaacaacat 22518820
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>dbj|AP005296.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1720_F04
          Length = 105227

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 115/136 (84%), Gaps = 6/136 (4%)
 Strand = Plus / Plus

                                                                         
Query: 393   ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 452
             |||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct: 62493 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 62552

                                                                         
Query: 453   gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 512
             ||||||| | |   | ||||||||| |||   |||||||||||||||| |  |||| |||
Sbjct: 62553 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 62606

                             
Query: 513   tgaccccatttgctgg 528
              | |||||||||||||
Sbjct: 62607 cggccccatttgctgg 62622



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 192   ttcagctgtaggaaacaacat 212
             |||||||||||||||||||||
Sbjct: 62288 ttcagctgtaggaaacaacat 62308
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>dbj|AK068892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001G22, full
            insert sequence
          Length = 2157

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 115/136 (84%), Gaps = 6/136 (4%)
 Strand = Plus / Minus

                                                                        
Query: 393  ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 452
            |||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct: 1708 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 1649

                                                                        
Query: 453  gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 512
            ||||||| | |   | ||||||||| |||   |||||||||||||||| |  |||| |||
Sbjct: 1648 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 1595

                            
Query: 513  tgaccccatttgctgg 528
             | |||||||||||||
Sbjct: 1594 cggccccatttgctgg 1579



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 192  ttcagctgtaggaaacaacat 212
            |||||||||||||||||||||
Sbjct: 1913 ttcagctgtaggaaacaacat 1893
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>dbj|AK067125.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098J09, full
            insert sequence
          Length = 1741

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 115/136 (84%), Gaps = 6/136 (4%)
 Strand = Plus / Minus

                                                                        
Query: 393  ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 452
            |||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct: 1474 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 1415

                                                                        
Query: 453  gagagggcatggtagtagaagaggtagggctcgatgtgctcttgttagaacttgcagttg 512
            ||||||| | |   | ||||||||| |||   |||||||||||||||| |  |||| |||
Sbjct: 1414 gagaggggagg---gaagaagaggtcggg---gatgtgctcttgttagcagctgcacttg 1361

                            
Query: 513  tgaccccatttgctgg 528
             | |||||||||||||
Sbjct: 1360 cggccccatttgctgg 1345



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 192  ttcagctgtaggaaacaacat 212
            |||||||||||||||||||||
Sbjct: 1679 ttcagctgtaggaaacaacat 1659
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>dbj|AK059690.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B02, full
            insert sequence
          Length = 1540

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 62/67 (92%)
 Strand = Plus / Minus

                                                                        
Query: 393  ttcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgatt 452
            |||||||||| ||||||| ||||||||||||||| |||||||| || |||||||||||||
Sbjct: 1114 ttcatcgcttggagaacagtccttgagttaatgatgaaaaatcatattctttgcctgatt 1055

                   
Query: 453  gagaggg 459
            |||||||
Sbjct: 1054 gagaggg 1048



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 192  ttcagctgtaggaaacaacat 212
            |||||||||||||||||||||
Sbjct: 1319 ttcagctgtaggaaacaacat 1299
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>gb|BT017025.1| Zea mays clone EK07D2312F09.c mRNA sequence
          Length = 965

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 58/66 (87%)
 Strand = Plus / Minus

                                                                       
Query: 394 tcatcgcttcgagaacattccttgagttaatgaggaaaaatcgtactctttgcctgattg 453
           ||||||||| | ||| | |||||||||||| |||||||||||||| |||||||| |||||
Sbjct: 724 tcatcgcttggtgaaaaatccttgagttaacgaggaaaaatcgtaatctttgccagattg 665

                 
Query: 454 agaggg 459
            |||||
Sbjct: 664 tgaggg 659
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>gb|AY596550.1| Saccharum officinarum clone SCCCRZ1001B01, complete sequence
          Length = 2173

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 412  tccttgagttaatgaggaaaaatcgtactctttgcctgattgagaggg 459
            |||||||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1693 tccttgagttaacgaggaaaaatcgtaatctttgccagattgtgaggg 1646
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>gb|BT016701.1| Zea mays clone Contig534 mRNA sequence
          Length = 1500

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 412  tccttgagttaatgaggaaaaatcgtactctttgcctgattgagaggg 459
            |||||||||||| || |||||||| || |||||||| ||||| |||||
Sbjct: 1181 tccttgagttaaggacgaaaaatcatagtctttgccagattgtgaggg 1134
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>gb|AY105375.1| Zea mays PCO146209 mRNA sequence
          Length = 2189

 Score = 48.1 bits (24), Expect = 0.030
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                            
Query: 412  tccttgagttaatgaggaaaaatcgtactctttgcctgattgagaggg 459
            |||||||||||| || |||||||| || |||||||| ||||| |||||
Sbjct: 1687 tccttgagttaaggacgaaaaatcatagtctttgccagattgtgaggg 1640
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>emb|AL672186.7| Mouse DNA sequence from clone RP23-42G2 on chromosome X, complete
              sequence
          Length = 205757

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 43     acacaacagaataaaattatt 63
              |||||||||||||||||||||
Sbjct: 105652 acacaacagaataaaattatt 105672
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>ref|XM_540611.2| PREDICTED: Canis familiaris similar to solute carrier family 43,
            member 1 (LOC483493), mRNA
          Length = 2200

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 457  gggcatggtagtagaagaggtagg 480
            ||||| ||||||||||||||||||
Sbjct: 1843 gggcacggtagtagaagaggtagg 1820
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>gb|BC056074.1| Xenopus laevis dimethylarginine dimethylaminohydrolase 1, mRNA
           (cDNA clone MGC:69055 IMAGE:4965611), complete cds
          Length = 1344

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 200 taggaaacaacatgagcagt 219
           ||||||||||||||||||||
Sbjct: 209 taggaaacaacatgagcagt 228
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>gb|AC146076.2| Pan troglodytes BAC clone RP43-15J5 from 7, complete sequence
          Length = 161297

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 20     aacaatacaatcacatatgtggaa 43
              |||||||||||||||||| |||||
Sbjct: 153853 aacaatacaatcacatatatggaa 153830
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>emb|BX248308.11| Zebrafish DNA sequence from clone DKEY-247M21 in linkage group 21,
             complete sequence
          Length = 171606

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   tgcttatcgcccaatggagg 357
             ||||||||||||||||||||
Sbjct: 64629 tgcttatcgcccaatggagg 64648
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 72       atacaaagtaatggatatat 91
                ||||||||||||||||||||
Sbjct: 26867730 atacaaagtaatggatatat 26867749
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>gb|AC005674.11|AC005674 Homo sapiens chromosome 4 clone RP11-448G15, complete sequence
          Length = 199450

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 28     aatcacatatgtggaacaca 47
              ||||||||||||||||||||
Sbjct: 172719 aatcacatatgtggaacaca 172700
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>gb|AC036103.8|AC036103 Homo sapiens chromosome 15 clone CTD-2610G5 map 15q15, complete
             sequence
          Length = 142121

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 267   tatccacaattggcaaagctgcct 290
             |||| |||||||||||||||||||
Sbjct: 23466 tatctacaattggcaaagctgcct 23489
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>gb|AC125421.9| Homo sapiens chromosome 17, clone CTD-2532D12, complete sequence
          Length = 111128

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    ggaacacaacagaataaaattatt 63
             |||||| |||||||||||||||||
Sbjct: 90943 ggaacataacagaataaaattatt 90920
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>gb|AC084693.2|AC084693 Homo sapiens chromosome 15 clone RP11-35K2 map 15q15, complete sequence
          Length = 173660

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 267    tatccacaattggcaaagctgcct 290
              |||| |||||||||||||||||||
Sbjct: 145801 tatctacaattggcaaagctgcct 145824
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>gb|AC007040.2|AC007040 Homo sapiens BAC clone RP11-298H3 from 2, complete sequence
          Length = 181671

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 16     gcccaacaatacaatcacatatgt 39
              ||||||||||||||||| ||||||
Sbjct: 121396 gcccaacaatacaatcatatatgt 121419
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>gb|AC137735.5| Homo sapiens chromosome 17, clone CTD-2582D11, complete sequence
          Length = 169483

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 40    ggaacacaacagaataaaattatt 63
             |||||| |||||||||||||||||
Sbjct: 11226 ggaacataacagaataaaattatt 11203
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>gb|AY190936.1| Drosophila erecta clone DERF01_42_K12 (D1471) genomic sequence
          Length = 41352

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 105   caccctgaacaagagaaaaaagtt 128
             ||||||||| ||||||||||||||
Sbjct: 35733 caccctgaaaaagagaaaaaagtt 35710
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>dbj|AP004037.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1001_D02
          Length = 129081

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    atacaaagtaatggatatat 91
             ||||||||||||||||||||
Sbjct: 46273 atacaaagtaatggatatat 46292
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>dbj|AP004883.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0516F12
          Length = 146364

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     atacaaagtaatggatatat 91
              ||||||||||||||||||||
Sbjct: 133783 atacaaagtaatggatatat 133802
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>emb|BX255933.7| Zebrafish DNA sequence from clone DKEY-38L7 in linkage group 6,
             complete sequence
          Length = 231623

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 39    tggaacacaacagaataaaattat 62
             ||||||| ||||||||||||||||
Sbjct: 72901 tggaacaaaacagaataaaattat 72924
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>emb|CR956639.4| Pig DNA sequence from clone CH242-279P20 on chromosome 17, complete
            sequence
          Length = 50643

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 496  gttagaacttgcagttgtga 515
            ||||||||||||||||||||
Sbjct: 5467 gttagaacttgcagttgtga 5486
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>emb|AL669938.9| Mouse DNA sequence from clone RP23-264N2 on chromosome 4, complete
              sequence
          Length = 199071

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      gcatttaaagggcaagccca 20
              ||||||||||||||||||||
Sbjct: 172037 gcatttaaagggcaagccca 172056


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,166,692
Number of Sequences: 3902068
Number of extensions: 5166692
Number of successful extensions: 92640
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92543
Number of HSP's gapped (non-prelim): 97
length of query: 540
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 517
effective length of database: 17,143,297,704
effective search space: 8863084912968
effective search space used: 8863084912968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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