ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal3e07 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK062123.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-D03, full insert sequence Length = 845 Score = 420 bits (212), Expect = e-114 Identities = 358/406 (88%), Gaps = 3/406 (0%) Strand = Plus / Minus Query: 299 ccccttgaccggaaattacctcctcctcccatggaaccagctgacttggacatagcttct 358 ||||||||||||||||| |||||||| ||| |||| || || || | ||||| |||| Sbjct: 541 ccccttgaccggaaattgcctcctcc---catagaactggcagatttagccatagattct 485 Query: 359 agcgctggattcacaacctgtccagcttcacgcaagatcttaacgagattccttgaatat 418 |||||||||||||||||||| |||||||| | |||||||||||| |||||||| || || Sbjct: 484 agcgctggattcacaacctggccagcttccctcaagatcttaacaagattcctggagaat 425 Query: 419 tttgaattggaatgggtgaagaacgtgaaggccattccagtagcaccagcacggccagtt 478 |||| |||||| | ||||| || ||||| || ||||| |||||||||| ||||||||| Sbjct: 424 tttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagcgcggccagtt 365 Query: 479 cgacctatcctgtgaatataatcttcgatagttgtcgggaaatcaaaattaatcacgcac 538 |||||||| ||||||||||||||||| | |||||| || ||||||||||| ||||| ||| Sbjct: 364 cgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatttatcacacac 305 Query: 539 ttaatatccttcacatcaagaccacgtgccgctacatctgtggcagccattataggactc 598 ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 304 ttaatatccttgacatcaagaccacgtgccgctacatctgtggcagccattataggactt 245 Query: 599 ttcccattcttaaactctgccagaacatagtccctttcagactgagctttatcaccatgt 658 |||||| |||| |||||||||||||||||||||||||| | |||||||| |||||||| Sbjct: 244 ttcccactcttgaactctgccagaacatagtccctttctgcttgagctttgtcaccatga 185 Query: 659 atagataatgctggccatccgtccattctaagttgccgagtgacct 704 |||||||||||||||||||| |||||||||||||| |||||||||| Sbjct: 184 atagataatgctggccatccatccattctaagttgacgagtgacct 139
>gb|AY466159.1| Zea mays DEAD box RNA helicase (DRH1) mRNA, complete cds Length = 2214 Score = 291 bits (147), Expect = 2e-75 Identities = 219/243 (90%) Strand = Plus / Minus Query: 459 tagcaccagcacggccagttcgacctatcctgtgaatataatcttcgatagttgtcggga 518 |||||||||||||||||||||||||||||||||||||||||||||| | |||||| || | Sbjct: 1564 tagcaccagcacggccagttcgacctatcctgtgaatataatcttcaagagttgttggaa 1505 Query: 519 aatcaaaattaatcacgcacttaatatccttcacatcaagaccacgtgccgctacatctg 578 ||||| |||| ||||| ||||| || ||||||||||||||||||||||| || ||||||| Sbjct: 1504 aatcataatttatcacacactttatgtccttcacatcaagaccacgtgctgccacatctg 1445 Query: 579 tggcagccattataggactcttcccattcttaaactctgccagaacatagtccctttcag 638 ||||||||||||| || ||||| || ||||||||||||| ||||||||||||| ||||| Sbjct: 1444 tggcagccattatggggctcttgccgctcttaaactctgcaagaacatagtcccgttcag 1385 Query: 639 actgagctttatcaccatgtatagataatgctggccatccgtccattctaagttgccgag 698 ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| | Sbjct: 1384 cttgagctttatcaccatgtatagataatgctggccacccatccattctaagctgccggg 1325 Query: 699 tga 701 ||| Sbjct: 1324 tga 1322
>ref|XM_463609.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1443 Score = 218 bits (110), Expect = 2e-53 Identities = 140/150 (93%) Strand = Plus / Minus Query: 555 caagaccacgtgccgctacatctgtggcagccattataggactcttcccattcttaaact 614 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| Sbjct: 1405 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 1346 Query: 615 ctgccagaacatagtccctttcagactgagctttatcaccatgtatagataatgctggcc 674 |||||||||||||||||||||| | |||||||| |||||||| |||||||||||||||| Sbjct: 1345 ctgccagaacatagtccctttctgcttgagctttgtcaccatgaatagataatgctggcc 1286 Query: 675 atccgtccattctaagttgccgagtgacct 704 |||| |||||||||||||| |||||||||| Sbjct: 1285 atccatccattctaagttgacgagtgacct 1256
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 218 bits (110), Expect = 2e-53 Identities = 140/150 (93%) Strand = Plus / Plus Query: 555 caagaccacgtgccgctacatctgtggcagccattataggactcttcccattcttaaact 614 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| Sbjct: 39683609 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 39683668 Query: 615 ctgccagaacatagtccctttcagactgagctttatcaccatgtatagataatgctggcc 674 |||||||||||||||||||||| | |||||||| |||||||| |||||||||||||||| Sbjct: 39683669 ctgccagaacatagtccctttctgcttgagctttgtcaccatgaatagataatgctggcc 39683728 Query: 675 atccgtccattctaagttgccgagtgacct 704 |||| |||||||||||||| |||||||||| Sbjct: 39683729 atccatccattctaagttgacgagtgacct 39683758 Score = 196 bits (99), Expect = 7e-47 Identities = 180/207 (86%) Strand = Plus / Plus Query: 349 catagcttctagcgctggattcacaacctgtccagcttcacgcaagatcttaacgagatt 408 ||||| |||||||||||||||||||||||| |||||||| | |||||||||||| ||||| Sbjct: 39682140 catagattctagcgctggattcacaacctggccagcttccctcaagatcttaacaagatt 39682199 Query: 409 ccttgaatattttgaattggaatgggtgaagaacgtgaaggccattccagtagcaccagc 468 ||| || |||||| |||||| | ||||| || ||||| || ||||| |||||||||| Sbjct: 39682200 cctggagaattttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagc 39682259 Query: 469 acggccagttcgacctatcctgtgaatataatcttcgatagttgtcgggaaatcaaaatt 528 ||||||||||||||||| ||||||||||||||||| | |||||| || ||||||||||| Sbjct: 39682260 gcggccagttcgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatt 39682319 Query: 529 aatcacgcacttaatatccttcacatc 555 ||||| |||||||||||||| ||||| Sbjct: 39682320 tatcacacacttaatatccttgacatc 39682346 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 ccccttgaccggaaattacctcct 322 ||||||||||||||||| |||||| Sbjct: 39682009 ccccttgaccggaaattgcctcct 39682032 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 cttcatctttctgtcttctccagc 199 |||||||||||| ||||||||||| Sbjct: 29115681 cttcatctttctatcttctccagc 29115704
>dbj|AP003416.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456E05 Length = 173699 Score = 218 bits (110), Expect = 2e-53 Identities = 140/150 (93%) Strand = Plus / Plus Query: 555 caagaccacgtgccgctacatctgtggcagccattataggactcttcccattcttaaact 614 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| Sbjct: 164565 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 164624 Query: 615 ctgccagaacatagtccctttcagactgagctttatcaccatgtatagataatgctggcc 674 |||||||||||||||||||||| | |||||||| |||||||| |||||||||||||||| Sbjct: 164625 ctgccagaacatagtccctttctgcttgagctttgtcaccatgaatagataatgctggcc 164684 Query: 675 atccgtccattctaagttgccgagtgacct 704 |||| |||||||||||||| |||||||||| Sbjct: 164685 atccatccattctaagttgacgagtgacct 164714 Score = 196 bits (99), Expect = 7e-47 Identities = 180/207 (86%) Strand = Plus / Plus Query: 349 catagcttctagcgctggattcacaacctgtccagcttcacgcaagatcttaacgagatt 408 ||||| |||||||||||||||||||||||| |||||||| | |||||||||||| ||||| Sbjct: 163096 catagattctagcgctggattcacaacctggccagcttccctcaagatcttaacaagatt 163155 Query: 409 ccttgaatattttgaattggaatgggtgaagaacgtgaaggccattccagtagcaccagc 468 ||| || |||||| |||||| | ||||| || ||||| || ||||| |||||||||| Sbjct: 163156 cctggagaattttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagc 163215 Query: 469 acggccagttcgacctatcctgtgaatataatcttcgatagttgtcgggaaatcaaaatt 528 ||||||||||||||||| ||||||||||||||||| | |||||| || ||||||||||| Sbjct: 163216 gcggccagttcgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatt 163275 Query: 529 aatcacgcacttaatatccttcacatc 555 ||||| |||||||||||||| ||||| Sbjct: 163276 tatcacacacttaatatccttgacatc 163302 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 ccccttgaccggaaattacctcct 322 ||||||||||||||||| |||||| Sbjct: 162965 ccccttgaccggaaattgcctcct 162988
>dbj|AP003436.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0470A12 Length = 185095 Score = 218 bits (110), Expect = 2e-53 Identities = 140/150 (93%) Strand = Plus / Plus Query: 555 caagaccacgtgccgctacatctgtggcagccattataggactcttcccattcttaaact 614 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| Sbjct: 34508 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 34567 Query: 615 ctgccagaacatagtccctttcagactgagctttatcaccatgtatagataatgctggcc 674 |||||||||||||||||||||| | |||||||| |||||||| |||||||||||||||| Sbjct: 34568 ctgccagaacatagtccctttctgcttgagctttgtcaccatgaatagataatgctggcc 34627 Query: 675 atccgtccattctaagttgccgagtgacct 704 |||| |||||||||||||| |||||||||| Sbjct: 34628 atccatccattctaagttgacgagtgacct 34657 Score = 196 bits (99), Expect = 7e-47 Identities = 180/207 (86%) Strand = Plus / Plus Query: 349 catagcttctagcgctggattcacaacctgtccagcttcacgcaagatcttaacgagatt 408 ||||| |||||||||||||||||||||||| |||||||| | |||||||||||| ||||| Sbjct: 33039 catagattctagcgctggattcacaacctggccagcttccctcaagatcttaacaagatt 33098 Query: 409 ccttgaatattttgaattggaatgggtgaagaacgtgaaggccattccagtagcaccagc 468 ||| || |||||| |||||| | ||||| || ||||| || ||||| |||||||||| Sbjct: 33099 cctggagaattttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagc 33158 Query: 469 acggccagttcgacctatcctgtgaatataatcttcgatagttgtcgggaaatcaaaatt 528 ||||||||||||||||| ||||||||||||||||| | |||||| || ||||||||||| Sbjct: 33159 gcggccagttcgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatt 33218 Query: 529 aatcacgcacttaatatccttcacatc 555 ||||| |||||||||||||| ||||| Sbjct: 33219 tatcacacacttaatatccttgacatc 33245 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 299 ccccttgaccggaaattacctcct 322 ||||||||||||||||| |||||| Sbjct: 32908 ccccttgaccggaaattgcctcct 32931
>dbj|AK068197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013140N02, full insert sequence Length = 4012 Score = 218 bits (110), Expect = 2e-53 Identities = 140/150 (93%) Strand = Plus / Minus Query: 555 caagaccacgtgccgctacatctgtggcagccattataggactcttcccattcttaaact 614 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| Sbjct: 510 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 451 Query: 615 ctgccagaacatagtccctttcagactgagctttatcaccatgtatagataatgctggcc 674 |||||||||||||||||||||| | |||||||| |||||||| |||||||||||||||| Sbjct: 450 ctgccagaacatagtccctttctgcttgagctttgtcaccatgaatagataatgctggcc 391 Query: 675 atccgtccattctaagttgccgagtgacct 704 |||| |||||||||||||| |||||||||| Sbjct: 390 atccatccattctaagttgacgagtgacct 361 Score = 204 bits (103), Expect = 3e-49 Identities = 219/257 (85%), Gaps = 3/257 (1%) Strand = Plus / Minus Query: 299 ccccttgaccggaaattacctcctcctcccatggaaccagctgacttggacatagcttct 358 ||||||||||||||||| |||||||| ||| |||| || || || | ||||| |||| Sbjct: 2027 ccccttgaccggaaattgcctcctcc---catagaactggcagatttagccatagattct 1971 Query: 359 agcgctggattcacaacctgtccagcttcacgcaagatcttaacgagattccttgaatat 418 |||||||||||||||||||| |||||||| | |||||||||||| |||||||| || || Sbjct: 1970 agcgctggattcacaacctggccagcttccctcaagatcttaacaagattcctggagaat 1911 Query: 419 tttgaattggaatgggtgaagaacgtgaaggccattccagtagcaccagcacggccagtt 478 |||| |||||| | ||||| || ||||| || ||||| |||||||||| ||||||||| Sbjct: 1910 tttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagcgcggccagtt 1851 Query: 479 cgacctatcctgtgaatataatcttcgatagttgtcgggaaatcaaaattaatcacgcac 538 |||||||| ||||||||||||||||| | |||||| || ||||||||||| ||||| ||| Sbjct: 1850 cgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatttatcacacac 1791 Query: 539 ttaatatccttcacatc 555 ||||||||||| ||||| Sbjct: 1790 ttaatatccttgacatc 1774
>dbj|AK064782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B12, full insert sequence Length = 3413 Score = 218 bits (110), Expect = 2e-53 Identities = 140/150 (93%) Strand = Plus / Minus Query: 555 caagaccacgtgccgctacatctgtggcagccattataggactcttcccattcttaaact 614 ||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||| Sbjct: 1542 caagaccacgtgccgctacatctgtggcagccattataggacttttcccactcttgaact 1483 Query: 615 ctgccagaacatagtccctttcagactgagctttatcaccatgtatagataatgctggcc 674 |||||||||||||||||||||| | |||||||| |||||||| |||||||||||||||| Sbjct: 1482 ctgccagaacatagtccctttctgcttgagctttgtcaccatgaatagataatgctggcc 1423 Query: 675 atccgtccattctaagttgccgagtgacct 704 |||| |||||||||||||| |||||||||| Sbjct: 1422 atccatccattctaagttgacgagtgacct 1393 Score = 204 bits (103), Expect = 3e-49 Identities = 219/257 (85%), Gaps = 3/257 (1%) Strand = Plus / Minus Query: 299 ccccttgaccggaaattacctcctcctcccatggaaccagctgacttggacatagcttct 358 ||||||||||||||||| |||||||| ||| |||| || || || | ||||| |||| Sbjct: 3058 ccccttgaccggaaattgcctcctcc---catagaactggcagatttagccatagattct 3002 Query: 359 agcgctggattcacaacctgtccagcttcacgcaagatcttaacgagattccttgaatat 418 |||||||||||||||||||| |||||||| | |||||||||||| |||||||| || || Sbjct: 3001 agcgctggattcacaacctggccagcttccctcaagatcttaacaagattcctggagaat 2942 Query: 419 tttgaattggaatgggtgaagaacgtgaaggccattccagtagcaccagcacggccagtt 478 |||| |||||| | ||||| || ||||| || ||||| |||||||||| ||||||||| Sbjct: 2941 tttgcattggagagtgtgaaaaaggtgaatgcagttccactagcaccagcgcggccagtt 2882 Query: 479 cgacctatcctgtgaatataatcttcgatagttgtcgggaaatcaaaattaatcacgcac 538 |||||||| ||||||||||||||||| | |||||| || ||||||||||| ||||| ||| Sbjct: 2881 cgacctattctgtgaatataatcttcaagagttgttggaaaatcaaaatttatcacacac 2822 Query: 539 ttaatatccttcacatc 555 ||||||||||| ||||| Sbjct: 2821 ttaatatccttgacatc 2805
>ref|NM_203256.1| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding AT5G63120 transcript variant AT5G63120.2 mRNA, complete cds Length = 2185 Score = 75.8 bits (38), Expect = 2e-10 Identities = 128/158 (81%) Strand = Plus / Minus Query: 434 gtgaagaacgtgaaggccattccagtagcaccagcacggccagttcgacctatcctgtga 493 |||||||| || ||||||||||| |||| || ||||| || |||||||| ||||| || Sbjct: 1738 gtgaagaatgtaaaggccattcctttagctcctgcacgcccggttcgaccaatcctatgg 1679 Query: 494 atataatcttcgatagttgtcgggaaatcaaaattaatcacgcacttaatatccttcaca 553 || ||||| || | || | ||||||||| |||||| ||| || ||||| ||||||||| Sbjct: 1678 atgtaatcctccaatgtatttgggaaatcataattaaccacacatttaatgtccttcaca 1619 Query: 554 tcaagaccacgtgccgctacatctgtggcagccattat 591 ||||| || | ||| |||||||| ||||||| |||||| Sbjct: 1618 tcaagtccccttgctgctacatcagtggcagtcattat 1581
>emb|AJ010476.1|ATH010476 Arabidopsis thaliana mRNA for DEAD box RNA helicase, RH30 Length = 790 Score = 75.8 bits (38), Expect = 2e-10 Identities = 128/158 (81%) Strand = Plus / Minus Query: 434 gtgaagaacgtgaaggccattccagtagcaccagcacggccagttcgacctatcctgtga 493 |||||||| || ||||||||||| |||| || ||||| || |||||||| ||||| || Sbjct: 777 gtgaagaatgtaaaggccattcctttagctcctgcacgcccggttcgaccaatcctatgg 718 Query: 494 atataatcttcgatagttgtcgggaaatcaaaattaatcacgcacttaatatccttcaca 553 || ||||| || | || | ||||||||| |||||| ||| || ||||| ||||||||| Sbjct: 717 atgtaatcctccaatgtatttgggaaatcataattaaccacacatttaatgtccttcaca 658 Query: 554 tcaagaccacgtgccgctacatctgtggcagccattat 591 ||||| || | ||| |||||||| ||||||| |||||| Sbjct: 657 tcaagtccccttgctgctacatcagtggcagtcattat 620
>emb|BX832051.1|CNS09YVO Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH48ZH12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 2119 Score = 75.8 bits (38), Expect = 2e-10 Identities = 128/158 (81%) Strand = Plus / Minus Query: 434 gtgaagaacgtgaaggccattccagtagcaccagcacggccagttcgacctatcctgtga 493 |||||||| || ||||||||||| |||| || ||||| || |||||||| ||||| || Sbjct: 1726 gtgaagaatgtaaaggccattcctttagctcctgcacgcccggttcgaccaatcctatgg 1667 Query: 494 atataatcttcgatagttgtcgggaaatcaaaattaatcacgcacttaatatccttcaca 553 || ||||| || | || | ||||||||| |||||| ||| || ||||| ||||||||| Sbjct: 1666 atgtaatcctccaatgtatttgggaaatcataattaaccacacatttaatgtccttcaca 1607 Query: 554 tcaagaccacgtgccgctacatctgtggcagccattat 591 ||||| || | ||| |||||||| ||||||| |||||| Sbjct: 1606 tcaagtccccttgctgctacatcagtggcagtcattat 1569
>dbj|AP006094.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT39H01, TM0172, complete sequence Length = 127731 Score = 65.9 bits (33), Expect = 2e-07 Identities = 108/133 (81%) Strand = Plus / Plus Query: 555 caagaccacgtgccgctacatctgtggcagccattataggactcttcccattcttaaact 614 ||||||| ||||| || ||||| ||||||| ||| || ||||| | ||| | ||||| | Sbjct: 102309 caagaccccgtgcagcaacatcagtggcagtcataattggacttctgccacttttaaatt 102368 Query: 615 ctgccagaacatagtccctttcagactgagctttatcaccatgtatagataatgctggcc 674 | |||| ||| |||||||||||| ||| |||||||||||| || |||| |||||||| Sbjct: 102369 cagccaaaacccagtccctttcagcctggtttttatcaccatggatggatagtgctggcc 102428 Query: 675 atccgtccattct 687 |||| |||||||| Sbjct: 102429 atccttccattct 102441
>ref|NM_125706.2| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding AT5G63120 transcript variant AT5G63120.1 mRNA, complete cds Length = 2372 Score = 52.0 bits (26), Expect = 0.003 Identities = 98/122 (80%) Strand = Plus / Minus Query: 434 gtgaagaacgtgaaggccattccagtagcaccagcacggccagttcgacctatcctgtga 493 |||||||| || ||||||||||| |||| || ||||| || |||||||| ||||| || Sbjct: 1925 gtgaagaatgtaaaggccattcctttagctcctgcacgcccggttcgaccaatcctatgg 1866 Query: 494 atataatcttcgatagttgtcgggaaatcaaaattaatcacgcacttaatatccttcaca 553 || ||||| || | || | ||||||||| |||||| ||| || ||||| ||||||||| Sbjct: 1865 atgtaatcctccaatgtatttgggaaatcataattaaccacacatttaatgtccttcaca 1806 Query: 554 tc 555 || Sbjct: 1805 tc 1804 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 668 gctggccatccgtccattct 687 |||||||||||||||||||| Sbjct: 1504 gctggccatccgtccattct 1485
>ref|XM_588033.2| PREDICTED: Bos taurus similar to ATP-dependent RNA helicase ROK1 isoform b, transcript variant 1 (LOC510826), mRNA Length = 2501 Score = 52.0 bits (26), Expect = 0.003 Identities = 26/26 (100%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||||||||| Sbjct: 1491 ccagttcgacctatcctgtgaatata 1466
>ref|XM_877770.1| PREDICTED: Bos taurus similar to ATP-dependent RNA helicase ROK1 isoform b, transcript variant 2 (LOC510826), mRNA Length = 2560 Score = 52.0 bits (26), Expect = 0.003 Identities = 26/26 (100%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||||||||| Sbjct: 1491 ccagttcgacctatcctgtgaatata 1466
>gb|AY060589.1| Arabidopsis thaliana AT5g63120/MDC12_8 mRNA, complete cds Length = 2366 Score = 52.0 bits (26), Expect = 0.003 Identities = 98/122 (80%) Strand = Plus / Minus Query: 434 gtgaagaacgtgaaggccattccagtagcaccagcacggccagttcgacctatcctgtga 493 |||||||| || ||||||||||| |||| || ||||| || |||||||| ||||| || Sbjct: 1926 gtgaagaatgtaaaggccattcctttagctcctgcacgcccggttcgaccaatcctatgg 1867 Query: 494 atataatcttcgatagttgtcgggaaatcaaaattaatcacgcacttaatatccttcaca 553 || ||||| || | || | ||||||||| |||||| ||| || ||||| ||||||||| Sbjct: 1866 atgtaatcctccaatgtatttgggaaatcataattaaccacacatttaatgtccttcaca 1807 Query: 554 tc 555 || Sbjct: 1806 tc 1805 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 668 gctggccatccgtccattct 687 |||||||||||||||||||| Sbjct: 1505 gctggccatccgtccattct 1486
>dbj|AB008265.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDC12 Length = 81662 Score = 52.0 bits (26), Expect = 0.003 Identities = 98/122 (80%) Strand = Plus / Plus Query: 434 gtgaagaacgtgaaggccattccagtagcaccagcacggccagttcgacctatcctgtga 493 |||||||| || ||||||||||| |||| || ||||| || |||||||| ||||| || Sbjct: 27929 gtgaagaatgtaaaggccattcctttagctcctgcacgcccggttcgaccaatcctatgg 27988 Query: 494 atataatcttcgatagttgtcgggaaatcaaaattaatcacgcacttaatatccttcaca 553 || ||||| || | || | ||||||||| |||||| ||| || ||||| ||||||||| Sbjct: 27989 atgtaatcctccaatgtatttgggaaatcataattaaccacacatttaatgtccttcaca 28048 Query: 554 tc 555 || Sbjct: 28049 tc 28050 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 668 gctggccatccgtccattct 687 |||||||||||||||||||| Sbjct: 28685 gctggccatccgtccattct 28704
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 48.1 bits (24), Expect = 0.040 Identities = 33/36 (91%) Strand = Plus / Minus Query: 462 caccagcacggccagttcgacctatcctgtgaatat 497 |||||||||||||||||| ||||||| |||||||| Sbjct: 10958990 caccagcacggccagttcttcctatccggtgaatat 10958955
>gb|AC134769.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1145F05, from chromosome 3, complete sequence Length = 127348 Score = 48.1 bits (24), Expect = 0.040 Identities = 33/36 (91%) Strand = Plus / Plus Query: 462 caccagcacggccagttcgacctatcctgtgaatat 497 |||||||||||||||||| ||||||| |||||||| Sbjct: 22039 caccagcacggccagttcttcctatccggtgaatat 22074
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 48.1 bits (24), Expect = 0.040 Identities = 33/36 (91%) Strand = Plus / Minus Query: 462 caccagcacggccagttcgacctatcctgtgaatat 497 |||||||||||||||||| ||||||| |||||||| Sbjct: 10957091 caccagcacggccagttcttcctatccggtgaatat 10957056
>dbj|AK103891.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150D22, full insert sequence Length = 2587 Score = 48.1 bits (24), Expect = 0.040 Identities = 33/36 (91%) Strand = Plus / Minus Query: 462 caccagcacggccagttcgacctatcctgtgaatat 497 |||||||||||||||||| ||||||| |||||||| Sbjct: 1781 caccagcacggccagttcttcctatccggtgaatat 1746
>gb|AC137071.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042B10, from chromosome 3, complete sequence Length = 144205 Score = 48.1 bits (24), Expect = 0.040 Identities = 33/36 (91%) Strand = Plus / Minus Query: 462 caccagcacggccagttcgacctatcctgtgaatat 497 |||||||||||||||||| ||||||| |||||||| Sbjct: 3813 caccagcacggccagttcttcctatccggtgaatat 3778
>gb|BC089828.1| Rattus norvegicus three prime histone mRNA exonuclease 1, mRNA (cDNA clone MGC:108797 IMAGE:7322740), complete cds Length = 2896 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 132 caaaaaatgtatttaatttaatg 154 ||||||||||||||||||||||| Sbjct: 1527 caaaaaatgtatttaatttaatg 1505
>ref|NM_001014143.1| Rattus norvegicus three prime histone mRNA exonuclease 1 (Thex1), mRNA Length = 2896 Score = 46.1 bits (23), Expect = 0.16 Identities = 23/23 (100%) Strand = Plus / Minus Query: 132 caaaaaatgtatttaatttaatg 154 ||||||||||||||||||||||| Sbjct: 1527 caaaaaatgtatttaatttaatg 1505
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 46.1 bits (23), Expect = 0.16 Identities = 32/35 (91%) Strand = Plus / Plus Query: 470 cggccagttcgacctatcctgtgaatataatcttc 504 |||||||||||||| || | ||||||||||||||| Sbjct: 3526658 cggccagttcgaccgatacggtgaatataatcttc 3526692
>gb|AC155896.2| Medicago truncatula chromosome 2 BAC clone mth2-85c24, complete sequence Length = 132817 Score = 46.1 bits (23), Expect = 0.16 Identities = 50/59 (84%) Strand = Plus / Minus Query: 559 accacgtgccgctacatctgtggcagccattataggactcttcccattcttaaactctg 617 |||||| || || |||||||| |||| ||||||||||||||| ||| |||||||||| Sbjct: 111830 accacgagctgcaacatctgttgcagtcattataggactctttccagatttaaactctg 111772
>ref|NM_152300.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 (DDX52), transcript variant 2, mRNA Length = 3881 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 1664 ccagttcgacctatcctgtggatata 1639
>ref|NM_007010.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 52 (DDX52), transcript variant 1, mRNA Length = 3766 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 1549 ccagttcgacctatcctgtggatata 1524
>ref|XM_548903.2| PREDICTED: Canis familiaris similar to ATP-dependent RNA helicase ROK1 isoform a (LOC491783), mRNA Length = 1807 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 1508 ccagttcgacctatcctgtggatata 1483
>ref|XM_381200.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01024.1) partial mRNA Length = 3684 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 463 accagcacggccagttcgacct 484 |||||||||||||||||||||| Sbjct: 2826 accagcacggccagttcgacct 2805
>ref|XM_847865.1| PREDICTED: Canis familiaris similar to ATP-dependent RNA helicase ROK1 isoform a (LOC610374), mRNA Length = 1807 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 1508 ccagttcgacctatcctgtggatata 1483
>gb|BC006489.2| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, mRNA (cDNA clone IMAGE:3687438), partial cds Length = 1662 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 1505 ccagttcgacctatcctgtggatata 1480
>emb|AJ010840.1|HSA010840 Homo sapiens mRNA for ATP-dependent RNA helicase, partial Length = 1824 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 974 ccagttcgacctatcctgtggatata 949
>emb|CR613865.1| full-length cDNA clone CS0DC028YA19 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1815 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 377 ccagttcgacctatcctgtggatata 352
>dbj|AK027425.1| Homo sapiens cDNA FLJ14519 fis, clone NT2RM1000852, highly similar to Homo sapiens putative ATP-dependent RNA helicase ROK1 mRNA Length = 2487 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 1015 ccagttcgacctatcctgtggatata 990
>dbj|AK001245.1| Homo sapiens cDNA FLJ10383 fis, clone NT2RM2002100, highly similar to Homo sapiens mRNA for ATP-dependent RNA helicase Length = 1898 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 1064 ccagttcgacctatcctgtggatata 1039
>dbj|AK001652.1| Homo sapiens cDNA FLJ10790 fis, clone NT2RP4000518, weakly similar to ATP-DEPENDENT RNA HELICASE ROK1 Length = 3123 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 1651 ccagttcgacctatcctgtggatata 1626
>gb|AF077033.1| Homo sapiens putative ATP-dependent RNA helicase ROK1 mRNA, complete cds Length = 2714 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 1522 ccagttcgacctatcctgtggatata 1497
>emb|BX470190.5| Zebrafish DNA sequence from clone CH211-237N17 in linkage group 3, complete sequence Length = 150830 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 125 attcccccaaaaaatgtattta 146 |||||||||||||||||||||| Sbjct: 5940 attcccccaaaaaatgtattta 5919
>dbj|AK025721.1| Homo sapiens cDNA: FLJ22068 fis, clone HEP11588, highly similar to AF077033 Homo sapiens putative ATP-dependent RNA helicase ROK1 mRNA Length = 2990 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 57 ccagttcgacctatcctgtggatata 32
>emb|BX649545.14| Zebrafish DNA sequence from clone CH211-9N13 in linkage group 19, complete sequence Length = 169802 Score = 44.1 bits (22), Expect = 0.62 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 ccaaaaaatgtatttaatttaa 152 |||||||||||||||||||||| Sbjct: 14973 ccaaaaaatgtatttaatttaa 14952
>gb|AY107918.1| Zea mays PCO117725 mRNA sequence Length = 653 Score = 44.1 bits (22), Expect = 0.62 Identities = 43/50 (86%) Strand = Plus / Minus Query: 365 ggattcacaacctgtccagcttcacgcaagatcttaacgagattccttga 414 ||||||||||| || |||||||| |||| ||||| || ||||||||||| Sbjct: 97 ggattcacaacttggccagcttctcgcagaatcttcactagattccttga 48
>gb|BC041785.1| Homo sapiens DEAD (Asp-Glu-Ala-Asp) box polypeptide 52, mRNA (cDNA clone MGC:32662 IMAGE:4808288), complete cds Length = 3097 Score = 44.1 bits (22), Expect = 0.62 Identities = 25/26 (96%) Strand = Plus / Minus Query: 473 ccagttcgacctatcctgtgaatata 498 |||||||||||||||||||| ||||| Sbjct: 1537 ccagttcgacctatcctgtggatata 1512
>gb|AC120020.9| Mus musculus chromosome 16, clone RP24-251L14, complete sequence Length = 153700 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 taaaacttcatctttctgtct 191 ||||||||||||||||||||| Sbjct: 99085 taaaacttcatctttctgtct 99105
>ref|XM_480880.1| Oryza sativa (japonica cultivar-group), mRNA Length = 465 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 462 caccagcacggccagttcgac 482 ||||||||||||||||||||| Sbjct: 192 caccagcacggccagttcgac 212
>gb|AC151801.1| Solanum demissum chromosome 11 clone PGEC591C22 map MAP_LOC, complete sequence Length = 147506 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 135 aaaatgtatttaatttaatgcctaa 159 |||||||||||||||||||| |||| Sbjct: 147247 aaaatgtatttaatttaatgtctaa 147271
>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence Length = 3214944 Score = 42.1 bits (21), Expect = 2.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 551 acatcaagaccacgtgccgctacatctgt 579 ||||| ||||||||||||||||| ||||| Sbjct: 1025780 acatctagaccacgtgccgctacgtctgt 1025808
>ref|XM_730903.1| Plasmodium chabaudi chabaudi hypothetical protein (PC107933.00.0) partial mRNA Length = 212 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 406 attccttgaatattttgaatt 426 ||||||||||||||||||||| Sbjct: 123 attccttgaatattttgaatt 103
>gb|AC159816.2| Mus musculus BAC clone RP23-321A19 from chromosome 9, complete sequence Length = 191274 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 521 tcaaaattaatcacgcacttaatat 545 ||||||||||||| ||||||||||| Sbjct: 50951 tcaaaattaatcaagcacttaatat 50927
>gb|AE014819.1| Plasmodium falciparum 3D7 chromosome 14 section 4 of 13 of the complete sequence Length = 251448 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 133 aaaaaatgtatttaatttaat 153 ||||||||||||||||||||| Sbjct: 20652 aaaaaatgtatttaatttaat 20632
>emb|AL358135.19| Human DNA sequence from clone RP11-342L7 on chromosome 6 Contains part of the RUNX2 gene for runt-related transcription factor 2, complete sequence Length = 49523 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 211 tcttctttcttagtatcttct 231 ||||||||||||||||||||| Sbjct: 39624 tcttctttcttagtatcttct 39604
>gb|AC162180.2| Mus musculus BAC clone RP23-126K16 from chromosome 9, complete sequence Length = 226160 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 521 tcaaaattaatcacgcacttaatat 545 ||||||||||||| ||||||||||| Sbjct: 212924 tcaaaattaatcaagcacttaatat 212900
>emb|CR388169.7| Zebrafish DNA sequence from clone DKEYP-61H1 in linkage group 3, complete sequence Length = 89582 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 124 aattcccccaaaaaatgtatt 144 ||||||||||||||||||||| Sbjct: 27066 aattcccccaaaaaatgtatt 27046
>gb|AC024451.8| Homo sapiens chromosome 11, clone RP11-697N18, complete sequence Length = 159791 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 156 ctaaatgtatgcagataaaac 176 ||||||||||||||||||||| Sbjct: 117985 ctaaatgtatgcagataaaac 117965
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 caccagcacggccagttcgac 482 ||||||||||||||||||||| Sbjct: 8398184 caccagcacggccagttcgac 8398164
>dbj|AP003907.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1217_D10 Length = 103188 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 caccagcacggccagttcgac 482 ||||||||||||||||||||| Sbjct: 13901 caccagcacggccagttcgac 13881
>dbj|AP004705.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0682A06 Length = 142023 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 462 caccagcacggccagttcgac 482 ||||||||||||||||||||| Sbjct: 138293 caccagcacggccagttcgac 138273
>gb|AC154284.1| Mus musculus BAC clone RP23-452N24 from 16, complete sequence Length = 182088 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 171 taaaacttcatctttctgtct 191 ||||||||||||||||||||| Sbjct: 174687 taaaacttcatctttctgtct 174707
>emb|AL732466.7| Mouse DNA sequence from clone RP23-149G14 on chromosome 2, complete sequence Length = 172535 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 168 agataaaacttcatctttctg 188 ||||||||||||||||||||| Sbjct: 141203 agataaaacttcatctttctg 141183
>ref|NM_120078.2| Arabidopsis thaliana SEC14 AT4G39180 (SEC14) mRNA, complete cds Length = 2321 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 acttcatctttctgtcttctccag 198 ||||||||||||| |||||||||| Sbjct: 2191 acttcatctttctatcttctccag 2168
>gb|AC147455.3| Atelerix albiventris clone LB4-341B4, complete sequence Length = 164065 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ccccaaaaaatgtatttaatttaa 152 ||||||||||||| |||||||||| Sbjct: 86190 ccccaaaaaatgtttttaatttaa 86167
>gb|AC105152.10| Mus musculus chromosome 1, clone RP23-265D3, complete sequence Length = 230407 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 cccccaaaaaatgtatttaa 147 |||||||||||||||||||| Sbjct: 42334 cccccaaaaaatgtatttaa 42353
>gb|AC099033.2| Drosophila melanogaster clone BACR14N05, complete sequence Length = 170313 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 68 tacaaaaatattaagaactt 87 |||||||||||||||||||| Sbjct: 15154 tacaaaaatattaagaactt 15173
>gb|AC011072.9| Drosophila melanogaster clone BACR48A20, complete sequence Length = 166178 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tacaaaaatattaagaactt 87 |||||||||||||||||||| Sbjct: 65437 tacaaaaatattaagaactt 65418
>gb|AC134460.4| Mus musculus BAC clone RP23-373D18 from chromosome 10, complete sequence Length = 174545 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 170954 aaaaatgtatttaatttaat 170935
>emb|CR524827.16| Zebrafish DNA sequence from clone CH211-167H17 in linkage group 16, complete sequence Length = 153848 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 80694 atttcaaagaatttcccccaaaaa 80717
>emb|CR626889.13| Zebrafish DNA sequence from clone DKEY-4P15 in linkage group 15, complete sequence Length = 205513 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 100050 atttcaaagaatttcccccaaaaa 100073
>gb|AC140370.3| Mus musculus BAC clone RP24-75N6 from chromosome 7, complete sequence Length = 189786 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 202 gagaatggatcttctttcttagtatctt 229 ||||||||||||| |||||||| ||||| Sbjct: 154531 gagaatggatcttttttcttaggatctt 154504 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 202 gagaatggatcttctttcttagtatctt 229 ||||||||||||| |||||||| ||||| Sbjct: 43476 gagaatggatcttttttcttaggatctt 43449
>emb|Z99102.1|CEB0331 Caenorhabditis elegans Cosmid B0331, complete sequence Length = 8973 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 accagttgcaggatttcaaagaaa 125 ||||||| |||||||||||||||| Sbjct: 2935 accagttccaggatttcaaagaaa 2958
>emb|BX950203.15| Zebrafish DNA sequence from clone CH211-108P22, complete sequence Length = 129504 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 25280 atttcaaagaatttcccccaaaaa 25257
>emb|BX640506.12| Zebrafish DNA sequence from clone DKEY-271E14 in linkage group 12, complete sequence Length = 196667 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 132731 atttcaaagaatttcccccaaaaa 132708
>gb|AC121768.2| Mus musculus BAC clone RP23-339H16 from 15, complete sequence Length = 199607 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 ttgaatattttgaattggaatggg 434 ||||||||||||||| |||||||| Sbjct: 69375 ttgaatattttgaatgggaatggg 69398
>gb|AC138222.15| Mus musculus chromosome 1, clone RP23-380H16, complete sequence Length = 184152 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 cccccaaaaaatgtatttaa 147 |||||||||||||||||||| Sbjct: 4397 cccccaaaaaatgtatttaa 4416
>ref|XM_719478.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00055) partial mRNA Length = 948 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 aagaaattcccccaaaaaat 139 |||||||||||||||||||| Sbjct: 877 aagaaattcccccaaaaaat 858
>ref|XM_724440.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01734) partial mRNA Length = 867 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 caaaaaatgtatttaattta 151 |||||||||||||||||||| Sbjct: 386 caaaaaatgtatttaattta 405
>ref|XM_724645.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY01901) partial mRNA Length = 639 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 646 tttatcaccatgtatagataatgctggc 673 |||||| ||||||||| ||||||||||| Sbjct: 198 tttatctccatgtatacataatgctggc 171
>ref|XM_673358.1| Plasmodium berghei strain ANKA helicase, truncated (PB000434.03.0) partial mRNA Length = 564 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 646 tttatcaccatgtatagataatgctggc 673 |||||| ||||||||| ||||||||||| Sbjct: 159 tttatctccatgtatacataatgctggc 132
>emb|CR931763.8| Zebrafish DNA sequence from clone DKEY-65B12 in linkage group 5, complete sequence Length = 186739 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 112321 atttcaaagaatttcccccaaaaa 112298
>emb|AL591049.5| Human DNA sequence from clone RP11-450F12 on chromosome 6 Contains part of the gene for stromal membrane-associated protein SMAP1, complete sequence Length = 45032 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 agaatggatcttctttctta 222 |||||||||||||||||||| Sbjct: 9038 agaatggatcttctttctta 9019
>emb|AL160254.10| Human DNA sequence from clone RP11-576O3 on chromosome 13, complete sequence Length = 139881 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 ccagttgcaggatttcaaagaaat 126 ||||||||||||| |||||||||| Sbjct: 88343 ccagttgcaggatctcaaagaaat 88320
>emb|AL139377.8| Human DNA sequence from clone RP11-251J8 on chromosome 13 Contains 2 novel genes, the KIAA0610 gene and a CpG island, complete sequence Length = 153964 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 agataaaacttcatctttct 187 |||||||||||||||||||| Sbjct: 116700 agataaaacttcatctttct 116719
>gb|BT000610.1| Arabidopsis thaliana AtP-dependent RNA helicase-like protein (At5g63120/MDC12_8) mRNA, complete cds Length = 1455 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 668 gctggccatccgtccattct 687 |||||||||||||||||||| Sbjct: 1310 gctggccatccgtccattct 1291
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome Length = 3665893 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 551 acatcaagaccacgtgccgctacatctgtggc 582 |||||||||||||| ||||| ||||| ||||| Sbjct: 411870 acatcaagaccacgggccgcgacatcggtggc 411839
>emb|AL590149.9| Zebrafish DNA sequence from clone RP71-36D5 in linkage group 17 Contains the 3' part of a novel gene similar to KIAA0953, a novel gene similar to POMC (propiomelanocortin), a novel gene similar to FCN2 (ficolin 2), a novel gene similar to SNX9 (sorting nexin 9) and a CpG island, complete sequence Length = 167272 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 5968 atttcaaagaatttcccccaaaaa 5945
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90 Length = 198987 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 acttcatctttctgtcttctccag 198 ||||||||||||| |||||||||| Sbjct: 158060 acttcatctttctatcttctccag 158083
>emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome 4, BAC clone T22F8 (ESSA project) Length = 89035 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 acttcatctttctgtcttctccag 198 ||||||||||||| |||||||||| Sbjct: 26596 acttcatctttctatcttctccag 26619
>emb|CR376848.7| Zebrafish DNA sequence from clone CH211-197K23 in linkage group 24, complete sequence Length = 218909 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 13127 aaaaatgtatttaatttaat 13146
>emb|BX927407.11| Zebrafish DNA sequence from clone CH211-67F24 in linkage group 13, complete sequence Length = 123739 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 aaaaaatgtatttaatttaa 152 |||||||||||||||||||| Sbjct: 87431 aaaaaatgtatttaatttaa 87450
>emb|BX000700.38| Zebrafish DNA sequence from clone DKEY-27D5 in linkage group 11, complete sequence Length = 223355 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 65474 atttcaaagaatttcccccaaaaa 65497
>emb|BX323084.9| Zebrafish DNA sequence from clone DKEYP-9G5 in linkage group 6, complete sequence Length = 54121 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 tttaatttaatgcctaaatgtatg 166 |||||||||||| ||||||||||| Sbjct: 13839 tttaatttaatgactaaatgtatg 13862
>emb|CR391967.7| Zebrafish DNA sequence from clone CH211-107E6 in linkage group 25, complete sequence Length = 97560 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 47859 atttcaaagaatttcccccaaaaa 47882
>emb|BX640453.23| Zebrafish DNA sequence from clone DKEY-9L5 in linkage group 12, complete sequence Length = 223071 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 aaaaaatgtatttaatttaa 152 |||||||||||||||||||| Sbjct: 217160 aaaaaatgtatttaatttaa 217141
>emb|CR361561.8| Zebrafish DNA sequence from clone CH211-218K8 in linkage group 25, complete sequence Length = 200274 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 77862 atttcaaagaatttcccccaaaaa 77885
>emb|BX649391.13| Zebrafish DNA sequence from clone DKEY-1K23 in linkage group 5, complete sequence Length = 133337 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 20302 atttcaaagaatttcccccaaaaa 20325
>emb|BX511147.12| Zebrafish DNA sequence from clone DKEYP-36E3 in linkage group 25, complete sequence Length = 150385 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 18413 atttcaaagaatttcccccaaaaa 18436
>emb|CR361547.8| Zebrafish DNA sequence from clone CH211-22K7 in linkage group 4 Contains three novel genes and six CpG islands, complete sequence Length = 168908 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 77088 atttcaaagaatttcccccaaaaa 77065
>emb|BX571678.14| Zebrafish DNA sequence from clone DKEY-271J15 in linkage group 16, complete sequence Length = 252671 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 28704 atttcaaagaatttcccccaaaaa 28727
>emb|BX539346.8| Zebrafish DNA sequence from clone DKEYP-73G7 in linkage group 23, complete sequence Length = 171486 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 85437 aaaaatgtatttaatttaat 85456
>gb|AC092916.6| Homo sapiens 3 BAC RP11-615J4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 132182 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 151 aatgcctaaatgtatgcagataaa 174 ||||| |||||||||||||||||| Sbjct: 76212 aatgcataaatgtatgcagataaa 76235
>emb|CR384049.6| Zebrafish DNA sequence from clone CH211-145K21 in linkage group 19, complete sequence Length = 13742 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 2942 atttcaaagaatttcccccaaaaa 2965
>emb|CR377227.7| Zebrafish DNA sequence from clone CH211-226F6 in linkage group 2, complete sequence Length = 63114 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 45695 atttcaaagaatttcccccaaaaa 45718
>emb|BX649352.15| Zebrafish DNA sequence from clone DKEY-196J7 in linkage group 1, complete sequence Length = 226763 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 91729 atttcaaagaatttcccccaaaaa 91706
>gb|AC011460.3| Homo sapiens chromosome 19 clone CTC-429C10, complete sequence Length = 131826 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 51768 aaaaatgtatttaatttaat 51749
>emb|BX511073.3| Zebrafish DNA sequence from clone DKEY-245I10 in linkage group 8, complete sequence Length = 218866 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 aaatgtatttaatttaatgc 155 |||||||||||||||||||| Sbjct: 207374 aaatgtatttaatttaatgc 207393
>emb|BX511179.5| Zebrafish DNA sequence from clone CH211-108A2 in linkage group 21, complete sequence Length = 80039 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 48493 atttcaaagaatttcccccaaaaa 48516
>dbj|AK023652.1| Homo sapiens cDNA FLJ13590 fis, clone PLACE1009398, moderately similar to ZINC FINGER PROTEIN 135 Length = 1901 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 1800 aaaaatgtatttaatttaat 1819
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 450 ccattccagtagcaccagcacggc 473 |||||||||||||| ||||||||| Sbjct: 161976 ccattccagtagcagcagcacggc 161999
>emb|BX571800.8| Zebrafish DNA sequence from clone DKEY-29B15 in linkage group 5, complete sequence Length = 195520 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 aaaaaatgtatttaatttaa 152 |||||||||||||||||||| Sbjct: 113835 aaaaaatgtatttaatttaa 113816
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 129 ccccaaaaaatgtatttaatttaa 152 ||||||||||||| |||||||||| Sbjct: 1016746 ccccaaaaaatgtttttaatttaa 1016723
>gb|AC110892.11| Mus musculus chromosome 3, clone RP24-490D9, complete sequence Length = 150740 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 405 gattccttgaatattttgaattgg 428 |||| ||||||||||||||||||| Sbjct: 129645 gatttcttgaatattttgaattgg 129622
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 464 ccagcacggccagttcgacctatcctgtgaat 495 |||||||||||||| ||||| || |||||||| Sbjct: 496399 ccagcacggccagtccgaccaattctgtgaat 496430
>gb|AC160338.2| Mus musculus BAC clone RP23-261O3 from chromosome 9, complete sequence Length = 167569 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 131 ccaaaaaatgtatttaatttaatg 154 ||||||||||| |||||||||||| Sbjct: 66540 ccaaaaaatgtctttaatttaatg 66517
>ref|NM_073089.1| Caenorhabditis elegans CYtochrome P450 family member (cyp-29A4) (cyp-29A4) mRNA, complete cds Length = 1500 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 accagttgcaggatttcaaagaaa 125 ||||||| |||||||||||||||| Sbjct: 1122 accagttccaggatttcaaagaaa 1145
>gb|AC158680.4| Mus musculus 6 BAC RP23-112F6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206705 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 26872 aaaaatgtatttaatttaat 26853
>emb|BX323035.8| Zebrafish DNA sequence from clone DKEYP-94H10 in linkage group 2, complete sequence Length = 147640 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 32881 aaaaatgtatttaatttaat 32900
>ref|XM_397167.2| PREDICTED: Apis mellifera similar to CG6375-PB, isoform B (LOC413727), mRNA Length = 1308 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 553 atcaagaccacgtgccgctacatc 576 ||||||||||||||| |||||||| Sbjct: 741 atcaagaccacgtgcagctacatc 718
>emb|BX832016.1|CNS0A148 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH46ZE12 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 484 Score = 40.1 bits (20), Expect = 9.6 Identities = 47/56 (83%) Strand = Plus / Minus Query: 434 gtgaagaacgtgaaggccattccagtagcaccagcacggccagttcgacctatcct 489 |||||||| || ||||||||||| |||| || ||||| || |||||||| ||||| Sbjct: 115 gtgaagaatgtaaaggccattcctttagctcctgcacgcccggttcgaccaatcct 60
>emb|BX784393.3| Zebrafish DNA sequence from clone DKEY-126N3 in linkage group 1, complete sequence Length = 117152 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 15496 atttcaaagaatttcccccaaaaa 15473
>gb|AC011238.8| Homo sapiens BAC clone RP11-374C5 from 2, complete sequence Length = 155764 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 34603 aaaaatgtatttaatttaat 34622
>gb|CP000252.1| Syntrophus aciditrophicus SB, complete genome Length = 3179300 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 423 aattggaatgggtgaagaac 442 |||||||||||||||||||| Sbjct: 2927481 aattggaatgggtgaagaac 2927500
>emb|BX548032.5| Zebrafish DNA sequence from clone CH211-145G9 in linkage group 17, complete sequence Length = 161483 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 aaaaatattaagaactttgt 90 |||||||||||||||||||| Sbjct: 116324 aaaaatattaagaactttgt 116343
>emb|BX248117.9| Zebrafish DNA sequence from clone CH211-226D5, complete sequence Length = 181542 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 22873 aaaaatgtatttaatttaat 22854
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0421H07 Length = 158126 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 cttcatctttctgtcttctccagc 199 |||||||||||| ||||||||||| Sbjct: 76047 cttcatctttctatcttctccagc 76070
>gb|AC147034.2| Mus musculus BAC clone RP23-189C2 from chromosome 7, complete sequence Length = 213581 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 202 gagaatggatcttctttcttagtatctt 229 ||||||||||||| |||||||| ||||| Sbjct: 205738 gagaatggatcttttttcttaggatctt 205711 Score = 40.1 bits (20), Expect = 9.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 202 gagaatggatcttctttcttagtatctt 229 ||||||||||||| |||||||| ||||| Sbjct: 94676 gagaatggatcttttttcttaggatctt 94649
>gb|AC140780.3| Mus musculus BAC clone RP24-500J16 from chromosome 5, complete sequence Length = 166260 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 407 ttccttgaatattttgaatt 426 |||||||||||||||||||| Sbjct: 166066 ttccttgaatattttgaatt 166085
>emb|BX510317.5| Zebrafish DNA sequence from clone CH211-229G14 in linkage group 9, complete sequence Length = 159458 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 52668 atttcaaagaatttcccccaaaaa 52645
>emb|BX294118.4| Zebrafish DNA sequence from clone DKEYP-38B6, complete sequence Length = 184616 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 68130 atttcaaagaatttcccccaaaaa 68107
>emb|BX005264.10| Zebrafish DNA sequence from clone DKEY-63D22 in linkage group 2, complete sequence Length = 212605 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 178848 aaaaatgtatttaatttaat 178867
>emb|BX248328.6| Zebrafish DNA sequence from clone CH211-202H10, complete sequence Length = 194853 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 166391 aaaaatgtatttaatttaat 166410
>dbj|BS000082.1| Pan troglodytes chromosome 22 clone:RP43-097H18, map 22, complete sequences Length = 176268 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 aatgtatttaatttaatgcctaaa 160 ||||||||||||||||||| |||| Sbjct: 118864 aatgtatttaatttaatgcataaa 118887
>dbj|AK117291.1| Arabidopsis thaliana At4g39180 mRNA for SEC14 - like protein(At4g39180), complete cds, clone: RAFL16-84-P13 Length = 2426 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 175 acttcatctttctgtcttctccag 198 ||||||||||||| |||||||||| Sbjct: 2296 acttcatctttctatcttctccag 2273
>ref|NM_211617.1| Eremothecium gossypii AGL112Cp (AGL112C), mRNA Length = 1977 Score = 40.1 bits (20), Expect = 9.6 Identities = 29/32 (90%) Strand = Plus / Minus Query: 464 ccagcacggccagttcgacctatcctgtgaat 495 |||||||||||||| ||||| || |||||||| Sbjct: 1457 ccagcacggccagtccgaccaattctgtgaat 1426
>emb|AL132898.2|CEY59A8B Caenorhabditis elegans YAC Y59A8B, complete sequence Length = 174662 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 aaattcccccaaaaaatgta 142 |||||||||||||||||||| Sbjct: 52029 aaattcccccaaaaaatgta 52010
>emb|BX942821.24| Zebrafish DNA sequence from clone CH211-132N12 in linkage group 20, complete sequence Length = 159057 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 17742 atttcaaagaatttcccccaaaaa 17765
>emb|BX950217.14| Zebrafish DNA sequence from clone DKEY-192L17 in linkage group 4, complete sequence Length = 157921 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 47483 aaaaatgtatttaatttaat 47502
>emb|BX649441.5| Zebrafish DNA sequence from clone DKEYP-3B1 in linkage group 20, complete sequence Length = 114252 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 62564 atttcaaagaatttcccccaaaaa 62541
>emb|BX004966.12| Zebrafish DNA sequence from clone DKEY-5E12 in linkage group 19, complete sequence Length = 134336 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 97105 atttcaaagaatttcccccaaaaa 97128
>emb|BX072550.6| Zebrafish DNA sequence from clone DKEY-24P1 in linkage group 15, complete sequence Length = 229061 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 132 caaaaaatgtatttaattta 151 |||||||||||||||||||| Sbjct: 159252 caaaaaatgtatttaattta 159271
>emb|CR388225.18| Zebrafish DNA sequence from clone CH211-193C1 in linkage group 14, complete sequence Length = 153626 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 51329 atttcaaagaatttcccccaaaaa 51352
>emb|CR855192.10| Zebrafish DNA sequence from clone DKEY-202P3 in linkage group 10, complete sequence Length = 85127 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 64669 atttcaaagaatttcccccaaaaa 64692
>emb|BX004978.10| Zebrafish DNA sequence from clone DKEY-15P13 in linkage group 2, complete sequence Length = 184244 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 71863 aaaaatgtatttaatttaat 71844
>gb|AC153883.6| Mus musculus 10 BAC RP23-368G20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 181524 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 149200 aaaaatgtatttaatttaat 149219
>gb|AC004168.2|AC004168 Homo sapiens chromosome 4 clone B159L21 map 4q25, complete sequence Length = 185566 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 agtacaaaaatattaagaac 85 |||||||||||||||||||| Sbjct: 117137 agtacaaaaatattaagaac 117156
>gb|AE003799.4| Drosophila melanogaster chromosome 2R, section 51 of 73 of the complete sequence Length = 316981 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tacaaaaatattaagaactt 87 |||||||||||||||||||| Sbjct: 69816 tacaaaaatattaagaactt 69797
>dbj|AP001685.1| Homo sapiens genomic DNA, chromosome 21q, section 29/105 Length = 340000 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 aatgtatttaatttaatgcctaaa 160 ||||||||||||||||||| |||| Sbjct: 259291 aatgtatttaatttaatgcataaa 259314
>emb|CR812957.13| Zebrafish DNA sequence from clone DKEY-41L5 in linkage group 1, complete sequence Length = 220462 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 70906 atttcaaagaatttcccccaaaaa 70929
>emb|BX294383.7| Zebrafish DNA sequence from clone DKEYP-35E5 in linkage group 4, complete sequence Length = 184004 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 145284 atttcaaagaatttcccccaaaaa 145307
>emb|CT030124.12| Mouse DNA sequence from clone RP23-100B15 on chromosome 9, complete sequence Length = 203615 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 atcttctttcttagtatctt 229 |||||||||||||||||||| Sbjct: 182216 atcttctttcttagtatctt 182235
>emb|AL935208.8| Zebrafish DNA sequence from clone CH211-241N17, complete sequence Length = 151406 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 aaaaaatgtatttaatttaa 152 |||||||||||||||||||| Sbjct: 104020 aaaaaatgtatttaatttaa 104039
>emb|BX000705.13| Zebrafish DNA sequence from clone DKEY-76D18, complete sequence Length = 255779 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 142276 atttcaaagaatttcccccaaaaa 142299
>emb|AL929062.10| Mouse DNA sequence from clone RP23-342J9 on chromosome X, complete sequence Length = 212856 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 210 atcttctttcttagtatctt 229 |||||||||||||||||||| Sbjct: 27187 atcttctttcttagtatctt 27206
>gb|AC153533.4| Mus musculus 10 BAC RP23-474K10 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 187069 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 71909 aaaaatgtatttaatttaat 71928
>emb|CR848750.27| Zebrafish DNA sequence from clone RP71-4B23 in linkage group 15, complete sequence Length = 148714 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 22806 atttcaaagaatttcccccaaaaa 22829
>gb|AE017226.1| Treponema denticola ATCC 35405, complete genome Length = 2843201 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 643 agctttatcaccatgtatag 662 |||||||||||||||||||| Sbjct: 2395320 agctttatcaccatgtatag 2395301
>gb|AC160019.2| Gallus gallus BAC clone CH261-50H15 from chromosome unknown, complete sequence Length = 228494 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 tatccttcacatcaagacca 562 |||||||||||||||||||| Sbjct: 185673 tatccttcacatcaagacca 185692
>gb|AC157951.2| Gallus gallus BAC clone CH261-173J5 from chromosome unknown, complete sequence Length = 206432 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 543 tatccttcacatcaagacca 562 |||||||||||||||||||| Sbjct: 151653 tatccttcacatcaagacca 151634
>gb|AC150747.2| Mus musculus BAC clone RP23-249E15 from 5, complete sequence Length = 209364 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 ttccttgaatattttgaatt 426 |||||||||||||||||||| Sbjct: 161428 ttccttgaatattttgaatt 161409
>emb|BX255908.4| Zebrafish DNA sequence from clone CH211-250O16 in linkage group 5, complete sequence Length = 121726 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 114 atttcaaagaaattcccccaaaaa 137 ||||||||||| |||||||||||| Sbjct: 44377 atttcaaagaatttcccccaaaaa 44400
>gb|AC153803.1| Mus musculus 6 BAC RP24-276E19 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 155295 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 aaaaatgtatttaatttaat 153 |||||||||||||||||||| Sbjct: 42681 aaaaatgtatttaatttaat 42700
>emb|AL645806.9| Mouse DNA sequence from clone CT7-316H20 on chromosome 3, complete sequence Length = 129775 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 atttaatttaatgcctaaat 161 |||||||||||||||||||| Sbjct: 126262 atttaatttaatgcctaaat 126281
>emb|AL663056.11| Mouse DNA sequence from clone RP23-24O15 on chromosome X, complete sequence Length = 197729 Score = 40.1 bits (20), Expect = 9.6 Identities = 22/23 (95%) Strand = Plus / Minus Query: 26 tatagtcgctgntacatgagttg 48 ||||||||||| ||||||||||| Sbjct: 136410 tatagtcgctgttacatgagttg 136388
>gb|AC164552.4| Mus musculus BAC clone RP23-352M7 from chromosome 9, complete sequence Length = 169465 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 ccaaaaaatgtatttaatttaatg 154 ||||||||||| |||||||||||| Sbjct: 15286 ccaaaaaatgtctttaatttaatg 15309
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 450 ccattccagtagcaccagcacggc 473 |||||||||||||| ||||||||| Sbjct: 1458824 ccattccagtagcagcagcacggc 1458801
>dbj|AP000966.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B876D15, LL56-APP region, complete sequence Length = 156234 Score = 40.1 bits (20), Expect = 9.6 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 aatgtatttaatttaatgcctaaa 160 ||||||||||||||||||| |||| Sbjct: 123663 aatgtatttaatttaatgcataaa 123686
>emb|AL645759.11| Mouse DNA sequence from clone RP23-441I10 on chromosome 3, complete sequence Length = 118244 Score = 40.1 bits (20), Expect = 9.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 atttaatttaatgcctaaat 161 |||||||||||||||||||| Sbjct: 49179 atttaatttaatgcctaaat 49198 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,483,892 Number of Sequences: 3902068 Number of extensions: 7483892 Number of successful extensions: 149472 Number of sequences better than 10.0: 165 Number of HSP's better than 10.0 without gapping: 166 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 148758 Number of HSP's gapped (non-prelim): 705 length of query: 704 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 681 effective length of database: 17,143,297,704 effective search space: 11674585736424 effective search space used: 11674585736424 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
