ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCG1_YEAST (P32460) Protein DCG1 30 5.3
2TOP2_LEICH (O61078) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoi... 29 9.1

>DCG1_YEAST (P32460) Protein DCG1|
          Length = 244

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = -3

Query: 369 TNSVTVMLLYSLVFTLSP*ECKLASFSNRRRNETQVDMKE*HLKQRNKCLMM*FVEDQ 196
           + S+TV L  ++  T S   CK++ F+    +  Q+D +E  +K    CL +  ++DQ
Sbjct: 13  SKSMTVSLRETIEKTFSMESCKISYFTGPDTSPPQIDGQETSIKSMEACLPL-LIDDQ 69



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>TOP2_LEICH (O61078) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)|
          Length = 1236

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
 Frame = -2

Query: 412 PFCLVKIINGITSQNKFCHCNAA---IFSCFYSFSLRM*ACKFQQ*KKKRDSSRYER 251
           P  +V ++NG+ + N   HCNAA   + SC  S S       F++  K  D++R +R
Sbjct: 285 PKRIVGVVNGVVTYNGGTHCNAAMDILDSCLDSLSK-----NFKKNGKVVDTNRVQR 336


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,359,930
Number of Sequences: 219361
Number of extensions: 1140726
Number of successful extensions: 2309
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2309
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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