ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3e04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FP1_MYTED (Q25460) Adhesive plaque matrix protein (Polyphenolic ... 31 3.6
2RAF1_XENLA (P09560) RAF proto-oncogene serine/threonine-protein ... 31 3.6
3MSL2_DROME (P50534) Protein male-specific lethal-2 30 8.0

>FP1_MYTED (Q25460) Adhesive plaque matrix protein (Polyphenolic adhesive|
           protein) (Foot protein 1) (MEFP1) (Fragment)
          Length = 875

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +1

Query: 208 PTNRGKPTH*STYVAKCFNA*Q*YILRQRMMHVAKFSTSTKVPP*FR-KRSLPSHTKQNL 384
           PT + KPT+ STY AK               + A +      PP ++ K S PS  K   
Sbjct: 453 PTYKAKPTYPSTYKAK-------------PSYPASYKAKPSYPPTYKSKSSYPSSYKPKK 499

Query: 385 LYPP 396
            YPP
Sbjct: 500 TYPP 503



 Score = 30.0 bits (66), Expect = 6.1
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
 Frame = +1

Query: 208 PTNRGKPTH*STYVAK-CFNA*Q*Y--ILRQRMMHVAKFSTSTKVPP*FRKRSL-PSHTK 375
           PT + KPT+ STY AK  + A   Y    + +  +   +      PP ++ +S+ PS  K
Sbjct: 731 PTYKAKPTYPSTYKAKPTYKAKPTYPPTYKAKPSYPPTYKPKPSYPPTYKSKSIYPSSYK 790

Query: 376 QNLLYPP 396
               YPP
Sbjct: 791 PKKTYPP 797



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>RAF1_XENLA (P09560) RAF proto-oncogene serine/threonine-protein kinase (EC|
           2.7.11.1) (C-RAF)
          Length = 638

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = +2

Query: 218 VENLLTNQRTSQNVLTLDSNIFSGNG*CMSPNLAHQQKSHLDSERDPCLRTPSKISSTHR 397
           +E++    +T  N      ++F G+  CMSP + HQ      +  D  L   SK SST R
Sbjct: 1   MEHIQGAWKTLSNGFGFKESVFEGSS-CMSPTIVHQFGYQRRASDDGKLSDTSKTSSTMR 59

Query: 398 I 400
           +
Sbjct: 60  V 60



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>MSL2_DROME (P50534) Protein male-specific lethal-2|
          Length = 773

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/52 (32%), Positives = 21/52 (40%)
 Frame = +3

Query: 63  RCLSRLSMRQNNTCTHVDVPAFRVPRPNPGPSCGSCHCMCLKLPRLEHTDES 218
           RC    S     TC +   P ++        SC  CHC+C K P  E   ES
Sbjct: 526 RCGISGSSNTLTTCRNSRCPCYKSYN-----SCAGCHCVCCKNPHKEDYVES 572


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,443,862
Number of Sequences: 219361
Number of extensions: 2189206
Number of successful extensions: 5020
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5017
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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