ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal3e02 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ000231.1|HVJ000231 Hordeum vulgare mRNA for expressed sequence tag Length = 160 Score = 105 bits (53), Expect = 2e-19 Identities = 71/77 (92%) Strand = Plus / Minus Query: 99 tacatgcgtgattttggaaccaacaatagtttctccttccgacggacggttagcccaaac 158 |||| |||||||||||||| |||||||||||||||||||| ||| | ||||| ||||||| Sbjct: 149 tacaagcgtgattttggaatcaacaatagtttctccttcctacgaatggttatcccaaac 90 Query: 159 acctctgtcatatcaat 175 ||||||||||||||||| Sbjct: 89 acctctgtcatatcaat 73 Score = 50.1 bits (25), Expect = 0.008 Identities = 25/25 (100%) Strand = Plus / Minus Query: 259 cgaggttcataccagggcacatcct 283 ||||||||||||||||||||||||| Sbjct: 31 cgaggttcataccagggcacatcct 7
>gb|AC137586.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0054A16, complete sequence Length = 164605 Score = 60.0 bits (30), Expect = 9e-06 Identities = 60/70 (85%) Strand = Plus / Plus Query: 264 ttcataccagggcacatcctccgtcctgctccaaatggcaagaactgaaaatcattcccc 323 ||||| ||||||||||||||||| || |||||||||||| ||||| |||||||| || Sbjct: 164184 ttcatcccagggcacatcctccgcccataaccaaatggcaagtactgataatcattctcc 164243 Query: 324 ttgaagttga 333 ||||||||| Sbjct: 164244 gtgaagttga 164253 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 389 ctcccaggagctcggatccctaccaatggcccacgcattgac 430 ||||||| ||| |||||||||||||||||||| ||||||| Sbjct: 164315 ctcccagaagcgtggatccctaccaatggcccaaacattgac 164356
>ref|XM_479696.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1575 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaatggcaagaactg 310 ||||||||||| || ||||||| |||||||||||||||||| Sbjct: 1400 ccagggcacattcttcgtcctgatccaaatggcaagaactg 1360
>ref|XM_464369.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1791 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 269 accagggcacatcctccgtcctgctccaaatgg 301 ||||||||||||||| ||||||||||||||||| Sbjct: 1436 accagggcacatccttcgtcctgctccaaatgg 1404
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaatggcaagaactg 310 ||||||||||| || ||||||| |||||||||||||||||| Sbjct: 314490 ccagggcacattcttcgtcctgatccaaatggcaagaactg 314450 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 153 ccaaacacctctgtcatatcaat 175 ||||||||||||||||||||||| Sbjct: 303528 ccaaacacctctgtcatatcaat 303506 Score = 42.1 bits (21), Expect = 2.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 263 gttcataccagggcacatcctccgtcctgctccaaatggcaagaa 307 ||||||||| ||||| |||||||| || | ||| ||||||||||| Sbjct: 282596 gttcatacctgggcatatcctccgaccagttccgaatggcaagaa 282640
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 273 gggcacatcctccgtcctgctccaaatgg 301 ||||||||||||||||||||||||||||| Sbjct: 25774960 gggcacatcctccgtcctgctccaaatgg 25774932 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 270 ccagggcacatcctccgtcctgctccaaatgg 301 ||||||||||||||||| |||||||||||||| Sbjct: 25713689 ccagggcacatcctccgacctgctccaaatgg 25713720
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 269 accagggcacatcctccgtcctgctccaaatgg 301 ||||||||||||||| ||||||||||||||||| Sbjct: 4766829 accagggcacatccttcgtcctgctccaaatgg 4766797 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 267 ataccagggcacatcctccgtcctgctccaaatggcaagaact 309 |||||||| ||||| |||||||| | |||||||||||||||| Sbjct: 4724506 ataccaggacacattctccgtccagacccaaatggcaagaact 4724548 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 269 accagggcacatcctccgtcctgctccaaa 298 ||||||||||||||| || ||||||||||| Sbjct: 4770838 accagggcacatccttcgccctgctccaaa 4770809 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaa 298 |||||||||||||| ||||| |||||||| Sbjct: 4755982 ccagggcacatccttcgtccagctccaaa 4755954 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 266 cataccagggcacatcctccgtcctgctccaaa 298 |||||||||||||||||| || || |||||||| Sbjct: 4742823 cataccagggcacatccttcgcccagctccaaa 4742791 Score = 40.1 bits (20), Expect = 8.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaatggcaag 305 |||||||||||||| | |||||| ||||| |||||| Sbjct: 6560929 ccagggcacatccttcttcctgcaccaaaaggcaag 6560894
>dbj|AP004000.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1115_B01 Length = 129329 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 269 accagggcacatcctccgtcctgctccaaatgg 301 ||||||||||||||| ||||||||||||||||| Sbjct: 47419 accagggcacatccttcgtcctgctccaaatgg 47387 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Plus Query: 267 ataccagggcacatcctccgtcctgctccaaatggcaagaact 309 |||||||| ||||| |||||||| | |||||||||||||||| Sbjct: 5096 ataccaggacacattctccgtccagacccaaatggcaagaact 5138 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 269 accagggcacatcctccgtcctgctccaaa 298 ||||||||||||||| || ||||||||||| Sbjct: 51428 accagggcacatccttcgccctgctccaaa 51399 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaa 298 |||||||||||||| ||||| |||||||| Sbjct: 36572 ccagggcacatccttcgtccagctccaaa 36544 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 266 cataccagggcacatcctccgtcctgctccaaa 298 |||||||||||||||||| || || |||||||| Sbjct: 23413 cataccagggcacatccttcgcccagctccaaa 23381
>dbj|AP003990.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1073_F05 Length = 124252 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 269 accagggcacatcctccgtcctgctccaaatgg 301 ||||||||||||||| ||||||||||||||||| Sbjct: 8988 accagggcacatccttcgtcctgctccaaatgg 8956 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 269 accagggcacatcctccgtcctgctccaaa 298 ||||||||||||||| || ||||||||||| Sbjct: 12997 accagggcacatccttcgccctgctccaaa 12968
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0416A11 Length = 171519 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 273 gggcacatcctccgtcctgctccaaatgg 301 ||||||||||||||||||||||||||||| Sbjct: 57164 gggcacatcctccgtcctgctccaaatgg 57136
>dbj|AP004462.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0450B04 Length = 153268 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaatggcaagaactg 310 ||||||||||| || ||||||| |||||||||||||||||| Sbjct: 24004 ccagggcacattcttcgtcctgatccaaatggcaagaactg 23964 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 153 ccaaacacctctgtcatatcaat 175 ||||||||||||||||||||||| Sbjct: 13042 ccaaacacctctgtcatatcaat 13020
>dbj|AP003909.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1300_E01 Length = 103022 Score = 58.0 bits (29), Expect = 3e-05 Identities = 38/41 (92%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaatggcaagaactg 310 ||||||||||| || ||||||| |||||||||||||||||| Sbjct: 80916 ccagggcacattcttcgtcctgatccaaatggcaagaactg 80876 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 153 ccaaacacctctgtcatatcaat 175 ||||||||||||||||||||||| Sbjct: 69954 ccaaacacctctgtcatatcaat 69932 Score = 42.1 bits (21), Expect = 2.1 Identities = 39/45 (86%) Strand = Plus / Plus Query: 263 gttcataccagggcacatcctccgtcctgctccaaatggcaagaa 307 ||||||||| ||||| |||||||| || | ||| ||||||||||| Sbjct: 49022 gttcatacctgggcatatcctccgaccagttccgaatggcaagaa 49066
>dbj|AK072307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020N11, full insert sequence Length = 2010 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 273 gggcacatcctccgtcctgctccaaatgg 301 ||||||||||||||||||||||||||||| Sbjct: 1688 gggcacatcctccgtcctgctccaaatgg 1660
>dbj|AK068907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002L07, full insert sequence Length = 1791 Score = 58.0 bits (29), Expect = 3e-05 Identities = 32/33 (96%) Strand = Plus / Minus Query: 269 accagggcacatcctccgtcctgctccaaatgg 301 ||||||||||||||| ||||||||||||||||| Sbjct: 1436 accagggcacatccttcgtcctgctccaaatgg 1404
>dbj|AK067059.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013090O06, full insert sequence Length = 2127 Score = 58.0 bits (29), Expect = 3e-05 Identities = 29/29 (100%) Strand = Plus / Minus Query: 273 gggcacatcctccgtcctgctccaaatgg 301 ||||||||||||||||||||||||||||| Sbjct: 1667 gggcacatcctccgtcctgctccaaatgg 1639
>dbj|AP003571.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0458E02 Length = 154458 Score = 56.0 bits (28), Expect = 1e-04 Identities = 31/32 (96%) Strand = Plus / Plus Query: 270 ccagggcacatcctccgtcctgctccaaatgg 301 ||||||||||||||||| |||||||||||||| Sbjct: 137134 ccagggcacatcctccgacctgctccaaatgg 137165
>gb|DQ122176.1| Gossypium hirsutum cytochrome P450 DDWF1 mRNA, complete cds Length = 1676 Score = 50.1 bits (25), Expect = 0.008 Identities = 43/49 (87%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaatggcaagaactgaaaatcat 318 |||||||||||||||| ||| || ||||||||||| | |||||||||| Sbjct: 1376 ccagggcacatcctccttccagccccaaatggcaacagttgaaaatcat 1328
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 50.1 bits (25), Expect = 0.008 Identities = 52/61 (85%) Strand = Plus / Plus Query: 273 gggcacatcctccgtcctgctccaaatggcaagaactgaaaatcattccccttgaagttg 332 |||||||||||||| || |||||||||||| ||||| |||||||| || |||||||| Sbjct: 15545812 gggcacatcctccgcccataaccaaatggcaagtactgataatcattctccgtgaagttg 15545871 Query: 333 a 333 | Sbjct: 15545872 a 15545872 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 389 ctcccaggagctcggatccctaccaatggcccacgcattgac 430 ||||||| ||| |||||||||||||||||||| ||||||| Sbjct: 15545934 ctcccagaagcgtggatccctaccaatggcccaaacattgac 15545975 Score = 44.1 bits (22), Expect = 0.52 Identities = 67/82 (81%) Strand = Plus / Plus Query: 405 tccctaccaatggcccacgcattgacgaccacacgcgtcccagcaggaacaatgtatcca 464 ||||||||||||||||| || ||||| | |||||| |||| | ||| | || || ||| Sbjct: 15377999 tccctaccaatggcccaggcgttgaccaagacacgcatccctgaagggatcatataccca 15378058 Query: 465 tcgatgatgcagtcagccatgg 486 | |||| ||||||||||||||| Sbjct: 15378059 ttgatgttgcagtcagccatgg 15378080
>gb|AC135512.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0057M06, complete sequence Length = 147673 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Plus Query: 294 ccaaatggcaagaactgaaaatcattccccttgaagttga 333 |||||||||||| ||||| |||||||| || ||||||||| Sbjct: 51243 ccaaatggcaagtactgataatcattctccgtgaagttga 51282 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 389 ctcccaggagctcggatccctaccaatggcccacgcattgac 430 ||||||| ||| |||||||||||||||||||| ||||||| Sbjct: 51344 ctcccagaagcgtggatccctaccaatggcccaaacattgac 51385
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 48.1 bits (24), Expect = 0.033 Identities = 36/40 (90%) Strand = Plus / Plus Query: 294 ccaaatggcaagaactgaaaatcattccccttgaagttga 333 |||||||||||| ||||| |||||||| || ||||||||| Sbjct: 15633352 ccaaatggcaagtactgataatcattctccgtgaagttga 15633391 Score = 44.1 bits (22), Expect = 0.52 Identities = 37/42 (88%) Strand = Plus / Plus Query: 389 ctcccaggagctcggatccctaccaatggcccacgcattgac 430 ||||||| ||| |||||||||||||||||||| ||||||| Sbjct: 15633453 ctcccagaagcgtggatccctaccaatggcccaaacattgac 15633494 Score = 44.1 bits (22), Expect = 0.52 Identities = 67/82 (81%) Strand = Plus / Plus Query: 405 tccctaccaatggcccacgcattgacgaccacacgcgtcccagcaggaacaatgtatcca 464 ||||||||||||||||| || ||||| | |||||| |||| | ||| | || || ||| Sbjct: 15460936 tccctaccaatggcccaggcgttgaccaagacacgcatccctgaagggatcatataccca 15460995 Query: 465 tcgatgatgcagtcagccatgg 486 | |||| ||||||||||||||| Sbjct: 15460996 ttgatgttgcagtcagccatgg 15461017
>ref|XM_479695.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1587 Score = 46.1 bits (23), Expect = 0.13 Identities = 23/23 (100%) Strand = Plus / Minus Query: 153 ccaaacacctctgtcatatcaat 175 ||||||||||||||||||||||| Sbjct: 1535 ccaaacacctctgtcatatcaat 1513
>ref|XM_464360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1560 Score = 46.1 bits (23), Expect = 0.13 Identities = 38/43 (88%) Strand = Plus / Minus Query: 267 ataccagggcacatcctccgtcctgctccaaatggcaagaact 309 |||||||| ||||| |||||||| | |||||||||||||||| Sbjct: 1370 ataccaggacacattctccgtccagacccaaatggcaagaact 1328
>ref|XM_463098.1| Oryza sativa (japonica cultivar-group), mRNA Length = 558 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 274 ggcacatcctccgtcctgctccaaatg 300 ||||||||||||||||||| ||||||| Sbjct: 367 ggcacatcctccgtcctgccccaaatg 341
>gb|AC135564.4| Oryza sativa chromosome 3 BAC OSJNBb0056O10 genomic sequence, complete sequence Length = 139771 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Minus Query: 274 ggcacatcctccgtcctgctccaaatg 300 ||||||||||||||||||| ||||||| Sbjct: 119821 ggcacatcctccgtcctgccccaaatg 119795 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 267 ataccagggcacatcctccgtcctgctccaaa 298 |||||||| ||||||||||| || |||||||| Sbjct: 29982 ataccaggacacatcctccgcccagctccaaa 30013
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 274 ggcacatcctccgtcctgctccaaatg 300 ||||||||||||||||||| ||||||| Sbjct: 21767995 ggcacatcctccgtcctgccccaaatg 21768021 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 tcagccatggcaaggtgcgga 497 ||||||||||||||||||||| Sbjct: 3407782 tcagccatggcaaggtgcgga 3407802 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 267 ataccagggcacatcctccgtcctgctccaaa 298 |||||||| ||||||||||| || |||||||| Sbjct: 21857834 ataccaggacacatcctccgcccagctccaaa 21857803
>gb|AC137921.2| Oryza sativa chromosome 3 BAC OSJNBa0027H16 genomic sequence, complete sequence Length = 163108 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 274 ggcacatcctccgtcctgctccaaatg 300 ||||||||||||||||||| ||||||| Sbjct: 156240 ggcacatcctccgtcctgccccaaatg 156266
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.13 Identities = 26/27 (96%) Strand = Plus / Plus Query: 274 ggcacatcctccgtcctgctccaaatg 300 ||||||||||||||||||| ||||||| Sbjct: 21761024 ggcacatcctccgtcctgccccaaatg 21761050 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 tcagccatggcaaggtgcgga 497 ||||||||||||||||||||| Sbjct: 3407893 tcagccatggcaaggtgcgga 3407913 Score = 40.1 bits (20), Expect = 8.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 267 ataccagggcacatcctccgtcctgctccaaa 298 |||||||| ||||||||||| || |||||||| Sbjct: 21850863 ataccaggacacatcctccgcccagctccaaa 21850832
>gb|AC132003.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0091D07, complete sequence Length = 144652 Score = 44.1 bits (22), Expect = 0.52 Identities = 67/82 (81%) Strand = Plus / Plus Query: 405 tccctaccaatggcccacgcattgacgaccacacgcgtcccagcaggaacaatgtatcca 464 ||||||||||||||||| || ||||| | |||||| |||| | ||| | || || ||| Sbjct: 121629 tccctaccaatggcccaggcgttgaccaagacacgcatccctgaagggatcatataccca 121688 Query: 465 tcgatgatgcagtcagccatgg 486 | |||| ||||||||||||||| Sbjct: 121689 ttgatgttgcagtcagccatgg 121710
>ref|XM_775853.1| PREDICTED: Strongylocentrotus purpuratus similar to cytochrome P450, family 2, subfamily u, polypeptide 1 (LOC575452), mRNA Length = 1143 Score = 44.1 bits (22), Expect = 0.52 Identities = 28/30 (93%) Strand = Plus / Minus Query: 274 ggcacatcctccgtcctgctccaaatggca 303 |||| |||||||||||||||||||| |||| Sbjct: 979 ggcatatcctccgtcctgctccaaaaggca 950
>dbj|AK066010.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013043F18, full insert sequence Length = 1779 Score = 44.1 bits (22), Expect = 0.52 Identities = 67/82 (81%) Strand = Plus / Minus Query: 405 tccctaccaatggcccacgcattgacgaccacacgcgtcccagcaggaacaatgtatcca 464 ||||||||||||||||| || ||||| | |||||| |||| | ||| | || || ||| Sbjct: 1276 tccctaccaatggcccaggcgttgaccaagacacgcatccctgaagggatcatataccca 1217 Query: 465 tcgatgatgcagtcagccatgg 486 | |||| ||||||||||||||| Sbjct: 1216 ttgatgttgcagtcagccatgg 1195
>dbj|AK060739.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-C11, full insert sequence Length = 1603 Score = 44.1 bits (22), Expect = 0.52 Identities = 67/82 (81%) Strand = Plus / Minus Query: 405 tccctaccaatggcccacgcattgacgaccacacgcgtcccagcaggaacaatgtatcca 464 ||||||||||||||||| || ||||| | |||||| |||| | ||| | || || ||| Sbjct: 1121 tccctaccaatggcccaggcgttgaccaagacacgcatccctgaagggatcatataccca 1062 Query: 465 tcgatgatgcagtcagccatgg 486 | |||| ||||||||||||||| Sbjct: 1061 ttgatgttgcagtcagccatgg 1040
>ref|XM_479689.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1605 Score = 42.1 bits (21), Expect = 2.1 Identities = 39/45 (86%) Strand = Plus / Minus Query: 263 gttcataccagggcacatcctccgtcctgctccaaatggcaagaa 307 ||||||||| ||||| |||||||| || | ||| ||||||||||| Sbjct: 1440 gttcatacctgggcatatcctccgaccagttccgaatggcaagaa 1396
>ref|XM_464368.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1674 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaa 298 |||||||||||||| ||||| |||||||| Sbjct: 1361 ccagggcacatccttcgtccagctccaaa 1333
>ref|XM_464364.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1653 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 266 cataccagggcacatcctccgtcctgctccaaa 298 |||||||||||||||||| || || |||||||| Sbjct: 1366 cataccagggcacatccttcgcccagctccaaa 1334
>ref|NM_193326.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1494 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 204 tcccagtcaaaatggcacacaaggtttgc 232 ||||||||||||||| ||| ||||||||| Sbjct: 1352 tcccagtcaaaatggtacagaaggtttgc 1324
>ref|NM_187758.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3882 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 tcagccatggcaaggtgcgga 497 ||||||||||||||||||||| Sbjct: 3455 tcagccatggcaaggtgcgga 3475
>gb|AY532373.1| Ammi majus cytochrome P450 (CYP82H1) mRNA, complete cds Length = 1758 Score = 42.1 bits (21), Expect = 2.1 Identities = 42/49 (85%) Strand = Plus / Minus Query: 267 ataccagggcacatcctccgtcctgctccaaatggcaagaactgaaaat 315 ||||||||||| ||||||||||| ||||||||| |||| || ||||| Sbjct: 1419 ataccagggcatgacctccgtcctgatccaaatggtaagagctcaaaat 1371
>gb|AC126268.3| Mus musculus BAC clone RP23-227O11 from chromosome 12, complete sequence Length = 201581 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 47 aagcattataatgcatataac 67 ||||||||||||||||||||| Sbjct: 120647 aagcattataatgcatataac 120667
>gb|AC121918.3| Mus musculus BAC clone RP24-195D23 from chromosome 2, complete sequence Length = 179270 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 tcttttctcccaaccccaagg 197 ||||||||||||||||||||| Sbjct: 98001 tcttttctcccaaccccaagg 97981
>emb|AL355296.12| Human DNA sequence from clone RP11-510H23 on chromosome 6 Contains parts of 3 novel genes and a CpG island, complete sequence Length = 159110 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 31 ccttctttacaaagaaaagca 51 ||||||||||||||||||||| Sbjct: 14271 ccttctttacaaagaaaagca 14291
>gb|AC164638.4| Mus musculus BAC clone RP23-198N12 from chromosome 7, complete sequence Length = 242297 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 attataatgcatataacacaa 71 ||||||||||||||||||||| Sbjct: 110869 attataatgcatataacacaa 110849
>gb|AC105729.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1607A12, complete sequence Length = 177327 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 tcagccatggcaaggtgcgga 497 ||||||||||||||||||||| Sbjct: 21432 tcagccatggcaaggtgcgga 21412
>dbj|AK061866.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-H09, full insert sequence Length = 1631 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 204 tcccagtcaaaatggcacacaaggtttgc 232 ||||||||||||||| ||| ||||||||| Sbjct: 1367 tcccagtcaaaatggtacagaaggtttgc 1339
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12, complete sequence Length = 103330 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 477 tcagccatggcaaggtgcgga 497 ||||||||||||||||||||| Sbjct: 102593 tcagccatggcaaggtgcgga 102573
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 204 tcccagtcaaaatggcacacaaggtttgc 232 ||||||||||||||| ||| ||||||||| Sbjct: 20152108 tcccagtcaaaatggtacagaaggtttgc 20152080 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 204 tcccagtcaaaatggcacacaaggtttgc 232 ||||||||||||||| ||| ||||||||| Sbjct: 20122708 tcccagtcaaaatggtacagaaggtttgc 20122680
>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0051H17 Length = 187471 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 204 tcccagtcaaaatggcacacaaggtttgc 232 ||||||||||||||| ||| ||||||||| Sbjct: 58486 tcccagtcaaaatggtacagaaggtttgc 58458 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 204 tcccagtcaaaatggcacacaaggtttgc 232 ||||||||||||||| ||| ||||||||| Sbjct: 29086 tcccagtcaaaatggtacagaaggtttgc 29058
>dbj|AP004233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0065J17 Length = 139014 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 204 tcccagtcaaaatggcacacaaggtttgc 232 ||||||||||||||| ||| ||||||||| Sbjct: 120670 tcccagtcaaaatggtacagaaggtttgc 120642
>dbj|AK120213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013039G14, full insert sequence Length = 2706 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 204 tcccagtcaaaatggcacacaaggtttgc 232 ||||||||||||||| ||| ||||||||| Sbjct: 2426 tcccagtcaaaatggtacagaaggtttgc 2398
>dbj|AK108613.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-A12, full insert sequence Length = 1983 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 477 tcagccatggcaaggtgcgga 497 ||||||||||||||||||||| Sbjct: 1127 tcagccatggcaaggtgcgga 1147
>dbj|AK107034.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-121-B07, full insert sequence Length = 1674 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaa 298 |||||||||||||| ||||| |||||||| Sbjct: 1361 ccagggcacatccttcgtccagctccaaa 1333
>dbj|AK100832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123D13, full insert sequence Length = 1654 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Minus Query: 266 cataccagggcacatcctccgtcctgctccaaa 298 |||||||||||||||||| || || |||||||| Sbjct: 1367 cataccagggcacatccttcgcccagctccaaa 1335
>dbj|AK100062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013160F05, full insert sequence Length = 1760 Score = 42.1 bits (21), Expect = 2.1 Identities = 27/29 (93%) Strand = Plus / Minus Query: 204 tcccagtcaaaatggcacacaaggtttgc 232 ||||||||||||||| ||| ||||||||| Sbjct: 1496 tcccagtcaaaatggtacagaaggtttgc 1468
>emb|BX664607.21| Zebrafish DNA sequence from clone CH211-132B12 in linkage group 18, complete sequence Length = 179328 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 ttctttacaaagaaaagcatt 53 ||||||||||||||||||||| Sbjct: 41459 ttctttacaaagaaaagcatt 41439
>gb|AY870922.1| Teucrium chamaedrys isolate cy450P3B8 cytochrome P450 gene, partial cds Length = 341 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 405 tccctaccaatggcccacgcattga 429 ||||||||||| ||||||||||||| Sbjct: 252 tccctaccaattgcccacgcattga 228
>emb|AL773595.10| Mouse DNA sequence from clone RP23-297I16 on chromosome 2, complete sequence Length = 173925 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 177 tcttttctcccaaccccaagg 197 ||||||||||||||||||||| Sbjct: 168499 tcttttctcccaaccccaagg 168479
>gb|AY748324.1| Ginkgo biloba cinnamic acid 4-hydroxylase mRNA, complete cds Length = 1854 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 359 aaatctttcaggaatgaactcttc 382 ||||||||||||||| |||||||| Sbjct: 1442 aaatctttcaggaataaactcttc 1419
>ref|XM_464659.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1762 Score = 40.1 bits (20), Expect = 8.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaatggcaag 305 |||||||||||||| | |||||| ||||| |||||| Sbjct: 1403 ccagggcacatccttcttcctgcaccaaaaggcaag 1368
>gb|BC106471.1| Xenopus laevis cDNA clone IMAGE:7210242, partial cds Length = 1281 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 28 acaccttctttacaaagaaa 47 |||||||||||||||||||| Sbjct: 273 acaccttctttacaaagaaa 292
>gb|AY217351.1| Manihot esculenta cytochrome P450 protein CYP71E (c15) mRNA, complete cds Length = 1840 Score = 40.1 bits (20), Expect = 8.1 Identities = 41/48 (85%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaatggcaagaactgaaaatca 317 |||||||| ||||| || || ||||||||||||| |||| ||||||| Sbjct: 1380 ccagggcaaatcctgcggccagctccaaatggcaccaactcaaaatca 1333
>gb|AC122505.4| Mus musculus BAC clone RP24-419P3 from chromosome 6, complete sequence Length = 161366 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 168 atatcaatgtcttttctccc 187 |||||||||||||||||||| Sbjct: 159 atatcaatgtcttttctccc 140
>gb|AC122524.3| Mus musculus BAC clone RP24-494L9 from chromosome 6, complete sequence Length = 201568 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 168 atatcaatgtcttttctccc 187 |||||||||||||||||||| Sbjct: 55476 atatcaatgtcttttctccc 55495
>gb|AC002529.1| Homo sapiens BAC clone CTB-161N6 from 7, complete sequence Length = 136755 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 cgtcctgctccaaatggcaa 304 |||||||||||||||||||| Sbjct: 15525 cgtcctgctccaaatggcaa 15544
>gb|AC146161.2| Pan troglodytes BAC clone RP43-1G6 from 7, complete sequence Length = 205885 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 ataatgcatataacacaatattta 77 ||||||||||||||| |||||||| Sbjct: 61190 ataatgcatataacataatattta 61167
>emb|AL445231.8| Human DNA sequence from clone RP11-27K13 on chromosome 1 Contains the 3' end of the PTGFRN gene for prostaglandin F2 receptor negative regulator, the IGSF2 gene for immunoglobulin superfamily member 2, a novel gene (FLJ42338), the 5' end of the TTF2 gene for RNA polymerase II transcription termination factor and a CpG island, complete sequence Length = 126847 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 atttagcttagtttaatttt 92 |||||||||||||||||||| Sbjct: 64514 atttagcttagtttaatttt 64495
>emb|AL159154.16| Human DNA sequence from clone RP11-428G23 on chromosome 13 Contains part of a novel gene (KIAA0916), complete sequence Length = 124964 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 caatatttagcttagtttaatttt 92 |||||||||| ||||||||||||| Sbjct: 13718 caatatttagtttagtttaatttt 13741
>gb|AC108693.5| Homo sapiens 3 BAC RP11-271C24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 100473 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 39 acaaagaaaagcattataat 58 |||||||||||||||||||| Sbjct: 75354 acaaagaaaagcattataat 75335
>emb|BX511245.6| Zebrafish DNA sequence from clone CH211-125O16 in linkage group 17, complete sequence Length = 96687 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 atttagcttagtttaatttt 92 |||||||||||||||||||| Sbjct: 48870 atttagcttagtttaatttt 48889
>gb|AC027287.21| Homo sapiens 12 BAC RP11-616L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 202703 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 69 caatatttagcttagtttaatttt 92 |||||||||||||| ||||||||| Sbjct: 198276 caatatttagcttattttaatttt 198299
>gb|AC013545.8| Homo sapiens chromosome 8, clone RP11-414D17, complete sequence Length = 200208 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 taacaccttctttacaaaga 45 |||||||||||||||||||| Sbjct: 140358 taacaccttctttacaaaga 140377
>gb|AC091911.3| Homo sapiens chromosome 5 clone RP11-211K15, complete sequence Length = 167553 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 agaaaagcattataatgcatataa 66 ||||||||| |||||||||||||| Sbjct: 51674 agaaaagcaatataatgcatataa 51651
>gb|AC023949.6|AC023949 Homo sapiens chromosome 8, clone RP11-711B6, complete sequence Length = 191296 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 26 taacaccttctttacaaaga 45 |||||||||||||||||||| Sbjct: 151684 taacaccttctttacaaaga 151665
>gb|AC016763.8| Homo sapiens BAC clone RP11-548K3 from 2, complete sequence Length = 143283 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ttcatctgtaaatctttcag 369 |||||||||||||||||||| Sbjct: 37875 ttcatctgtaaatctttcag 37894
>gb|AF313490.1|AF313490 Lycianthes rantonnei flavonoid 3',5'-hydroxylase mRNA, complete cds Length = 1735 Score = 40.1 bits (20), Expect = 8.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 279 atcctccgtcctgctccaaatggcaagaactgaaaatcattccc 322 ||||| |||||||| |||||||| | |||| |||||||||||| Sbjct: 1390 atccttcgtcctgcaccaaatggaatcaactcaaaatcattccc 1347
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 cgacattcgcgattccgagg 263 |||||||||||||||||||| Sbjct: 4157472 cgacattcgcgattccgagg 4157491
>emb|BX322571.5| Zebrafish DNA sequence from clone DKEY-260A4 in linkage group 17, complete sequence Length = 58025 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 atttagcttagtttaatttt 92 |||||||||||||||||||| Sbjct: 53832 atttagcttagtttaatttt 53813
>dbj|AP005846.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1307A11 Length = 131538 Score = 40.1 bits (20), Expect = 8.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaatggcaag 305 |||||||||||||| | |||||| ||||| |||||| Sbjct: 121542 ccagggcacatccttcttcctgcaccaaaaggcaag 121507
>emb|BX004983.8| Zebrafish DNA sequence from clone DKEY-7F3, complete sequence Length = 234489 Score = 40.1 bits (20), Expect = 8.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 39 acaaagaaaagcattataatgcatataa 66 ||||| |||| ||||||||||||||||| Sbjct: 161538 acaaaaaaaaacattataatgcatataa 161511
>dbj|AK107104.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-122-A09, full insert sequence Length = 1762 Score = 40.1 bits (20), Expect = 8.1 Identities = 32/36 (88%) Strand = Plus / Minus Query: 270 ccagggcacatcctccgtcctgctccaaatggcaag 305 |||||||||||||| | |||||| ||||| |||||| Sbjct: 1403 ccagggcacatccttcttcctgcaccaaaaggcaag 1368
>gb|AC157520.2| Mus musculus BAC clone RP23-229N21 from 6, complete sequence Length = 196037 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 acaaagaaaagcattataat 58 |||||||||||||||||||| Sbjct: 110064 acaaagaaaagcattataat 110083
>gb|AF135485.1|AF135485 Glycine max cytochrome P450 monooxygenaseCYP93D1 (CYP93E1) mRNA, complete cds Length = 1850 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 ggatccctaccaatggccca 421 |||||||||||||||||||| Sbjct: 1274 ggatccctaccaatggccca 1255
>dbj|AB231332.1| Glycine max mRNA for beta-amyrin and sophoradiol 24-hydroxylase, complete cds Length = 1542 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 402 ggatccctaccaatggccca 421 |||||||||||||||||||| Sbjct: 1220 ggatccctaccaatggccca 1201 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,570,299 Number of Sequences: 3902068 Number of extensions: 5570299 Number of successful extensions: 107250 Number of sequences better than 10.0: 81 Number of HSP's better than 10.0 without gapping: 81 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 106725 Number of HSP's gapped (non-prelim): 521 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
