| Clone Name | rbaak17g11 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1296 bits (654), Expect = 0.0 Identities = 712/724 (98%), Gaps = 8/724 (1%) Strand = Plus / Minus Query: 15 aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 73 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643 Query: 74 gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatacttaaaag 132 |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583 Query: 133 gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 191 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523 Query: 192 gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacctcct---a 247 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacctcctccta 1463 Query: 248 tgcagcaagagatggtgggtgt-gtatggagaattttctaaccgtagaaggaaccagtct 306 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1462 tgcagcaagagatggtgggtgttgtatggagaattttctaaccgtagaaggaaccagtct 1403 Query: 307 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1402 tcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagct 1343 Query: 367 gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 426 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1342 gcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttct 1283 Query: 427 cgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagcctct 486 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1282 cgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagcctct 1223 Query: 487 tgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtacaccc 546 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1222 tgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtacaccc 1163 Query: 547 gagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttga 606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 1162 gagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttta 1103 Query: 607 cgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgatacggt 666 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1102 cgacagactcgtcacagacattgtcggtctggaagatacccttgcagacaccgatacggt 1043 Query: 667 cgtcacgggtgggagcccagtagaacttctccatacgaccatcacggatcagaggagcgt 726 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1042 cgtcacgggtgggagcccagtagaacttctccatacgaccatcacggatcagaggagcgt 983 Query: 727 agag 730 |||| Sbjct: 982 agag 979
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 1045 bits (527), Expect = 0.0 Identities = 673/718 (93%), Gaps = 14/718 (1%) Strand = Plus / Minus Query: 19 ggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgc 78 |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct: 764 ggtatactcaatatcttta----tatattaacaaaacatgcccagcaatcgcttggatgc 709 Query: 79 gatgcgg-acttaggta-----ggtaaaacatcagatattaaaagtggcatacttaaaag 132 ||||||| ||||||||| | ||||||||||||||||||| |||||| |||||||| Sbjct: 708 gatgcggtacttaggtacaaaggataaaacatcagatattaaat-tggcatgcttaaaag 650 Query: 133 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 192 ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| | ||| Sbjct: 649 gtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaagttcttggcagtctgg 590 Query: 193 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacctcct---atg 249 |||||||| ||| |||| || |||||||||||||||||||| |||||||||||| ||| Sbjct: 589 tcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccctttacctcctcctatg 530 Query: 250 cagcaagagatggtgggtgtgtatggagaattttctaaccgtagaaggaaccagtcttca 309 ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct: 529 cagcaagagatggtgggtgtgtatggagaatgttctaaccgtagaaggtaccagtcttca 470 Query: 310 tcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgca 369 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 469 tcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgca 410 Query: 370 cacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcga 429 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 409 cacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcca 350 Query: 430 ctgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgc 489 ||||||||||||||||||| |||||||| || ||||||||||||||||||||| |||||| Sbjct: 349 ctgtcatctttggctgctcaaaggtcactggtccgtcccgcgagttcaccagcttcttgc 290 Query: 490 caatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtacacccgag 549 ||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||| Sbjct: 289 caatgttctcgataccggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgag 230 Query: 550 cacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacga 609 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 229 cacgcagagcaccgaaaaagtcgatggattgtcctgggaaggtgtcgacgatcttgacga 170 Query: 610 cagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgatacggtcgt 669 | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 169 cggactcgtcgctgacattgtcggtctggaagatacccttgcagacaccgatacggtcgt 110 Query: 670 cacgggtgggagcccagtagaacttctccatacgaccatcacggatcagaggagcgta 727 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 109 cgcgggtgggagcccagtagaacttctccatacgaccatcacggatcagaggggcgta 52
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 1043 bits (526), Expect = 0.0 Identities = 656/696 (94%), Gaps = 10/696 (1%) Strand = Plus / Minus Query: 41 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 94 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 95 ggtaaaacatcagatattaaaagtggcatacttaaaaggtgtaaaggcagctgccgtcgt 154 | ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 155 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 214 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 215 gcaaagtaccttgctgtgctcctttacctcct---atgcagcaagagatggtgggtgtgt 271 ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358 Query: 272 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 331 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298 Query: 332 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238 Query: 392 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 451 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178 Query: 452 ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 511 |||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 1177 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 1118 Query: 512 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 571 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1117 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 1058 Query: 572 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 631 |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 1057 gatggattgtcctgggaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtc 998 Query: 632 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 691 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 997 ggtctggaagatacccttgcagacaccgatacggtcgtcgcgggtgggagcccagtagaa 938 Query: 692 cttctccatacgaccatcacggatcagaggagcgta 727 |||||||||||||||||||||||||||||| ||||| Sbjct: 937 cttctccatacgaccatcacggatcagaggggcgta 902
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 864 bits (436), Expect = 0.0 Identities = 442/444 (99%) Strand = Plus / Minus Query: 287 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 346 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 347 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 407 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 466 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 467 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 526 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 527 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 868 Query: 587 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 646 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 867 gaaggtgtcgacgatctttacgacagactcgtcacagacattgtcggtctggaagatacc 808 Query: 647 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 706 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 748 Query: 707 atcacggatcagaggagcgtagag 730 |||||||||||||||||||||||| Sbjct: 747 atcacggatcagaggagcgtagag 724 Score = 436 bits (220), Expect = e-119 Identities = 226/228 (99%) Strand = Plus / Minus Query: 15 aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 74 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333 Query: 75 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatacttaaaaggt 134 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273 Query: 135 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213 Query: 195 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 242 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 1165
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 783 bits (395), Expect = 0.0 Identities = 605/671 (90%), Gaps = 12/671 (1%) Strand = Plus / Minus Query: 55 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 108 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 109 -tattaaaagtggcatacttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 167 || | |||||||||| ||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 168 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 227 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 228 ctgtgctcctttacctcct---atgcagcaagagatggtgggtgtgtatggagaattttc 284 |||||||||||||||||| ||||||||||||||||||||||| ||| ||| | ||| Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356 Query: 285 taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 344 |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296 Query: 345 ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 404 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236 Query: 405 tgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccg 464 || |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||| Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccg 1176 Query: 465 tcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttg 524 |||||||||||||||||||||||||| |||||||| |||||||| || ||||||||| Sbjct: 1175 tcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttg 1116 Query: 525 cgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcct 584 ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 1115 cgcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcct 1056 Query: 585 gggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagata 644 ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 1055 gggaangtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagata 996 Query: 645 cccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacga 704 ||||||||||| ||||||||||| || |||||||| |||||||||||||||||||||||| Sbjct: 995 cccttgcagacgccgatacggtcctcgcgggtgggcgcccagtagaacttctccatacga 936 Query: 705 ccatcacggat 715 || |||||||| Sbjct: 935 ccgtcacggat 925
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 656 bits (331), Expect = 0.0 Identities = 331/331 (100%) Strand = Plus / Minus Query: 241 cctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaaggaac 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7351 cctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaaggaac 7292 Query: 301 cagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcag 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7291 cagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcag 7232 Query: 361 caagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagca 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7231 caagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagca 7172 Query: 421 gcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcacca 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7171 gcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcacca 7112 Query: 481 gcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgt 540 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7111 gcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgt 7052 Query: 541 acacccgagcacgcagagcaccgaaaaagtc 571 ||||||||||||||||||||||||||||||| Sbjct: 7051 acacccgagcacgcagagcaccgaaaaagtc 7021 Score = 454 bits (229), Expect = e-124 Identities = 242/245 (98%), Gaps = 1/245 (0%) Strand = Plus / Minus Query: 1 tattggtctttgccaa-tgggtatactcaatatatttagagatatattaacaaaacatgc 59 |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 7767 tattggtctttgccaaatgggtatacacaatatatttagagatatattaacaaaacatgc 7708 Query: 60 ccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtg 119 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7707 ccagcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtg 7648 Query: 120 gcatacttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagtt 179 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7647 gcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagtt 7588 Query: 180 cttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctccttt 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7587 cttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctccttt 7528 Query: 240 acctc 244 ||||| Sbjct: 7527 acctc 7523 Score = 317 bits (160), Expect = 3e-83 Identities = 160/160 (100%) Strand = Plus / Minus Query: 571 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 6821 Query: 631 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 690 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6820 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 6761 Query: 691 acttctccatacgaccatcacggatcagaggagcgtagag 730 |||||||||||||||||||||||||||||||||||||||| Sbjct: 6760 acttctccatacgaccatcacggatcagaggagcgtagag 6721 Score = 151 bits (76), Expect = 4e-33 Identities = 181/216 (83%) Strand = Plus / Minus Query: 512 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 571 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753 Query: 572 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 631 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 3752 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 3693 Query: 632 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 691 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 3692 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 3633 Query: 692 cttctccatacgaccatcacggatcagaggagcgta 727 ||||||||| || || ||||||||||| |||||||| Sbjct: 3632 cttctccatgcgcccgtcacggatcaggggagcgta 3597 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 363 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 422 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 423 ttctcgactgtcatctttggctgctcgaa 451 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 579 bits (292), Expect = e-162 Identities = 388/420 (92%) Strand = Plus / Minus Query: 287 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 346 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 347 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 406 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 407 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 466 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 467 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 526 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 527 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 586 |||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1064 Query: 587 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 646 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 1063 gaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacc 1004 Query: 647 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 706 ||||||||| ||||||||||| || |||||||| |||||||| ||||||||||||||||| Sbjct: 1003 cttgcagacgccgatacggtcctcgcgggtgggcgcccagtaaaacttctccatacgacc 944 Score = 168 bits (85), Expect = 2e-38 Identities = 118/129 (91%) Strand = Plus / Minus Query: 114 aaagtggcatacttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 173 |||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 174 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 233 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 234 tcctttacc 242 ||||||||| Sbjct: 1369 tcctttacc 1361
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 521 bits (263), Expect = e-144 Identities = 296/307 (96%) Strand = Plus / Minus Query: 265 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 324 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 325 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 385 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 445 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 504 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 505 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 564 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9 Query: 565 aaaagtc 571 ||||||| Sbjct: 8 aaaagtc 2
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 575 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027 Query: 576 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 635 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 967 Query: 636 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 695 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 966 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 907 Query: 696 tccatacgaccatcacggat 715 |||||||| || |||||||| Sbjct: 906 tccatacgcccgtcacggat 887 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 1518 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 1459 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 1458 caacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 9e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 286 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 345 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 346 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 405 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 406 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 465 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 466 cccgcgagttcaccagcctcttgccaatgttctc 499 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 575 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022 Query: 576 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 635 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 962 Query: 636 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 695 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 961 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 902 Query: 696 tccatacgaccatcacggat 715 |||||||| || |||||||| Sbjct: 901 tccatacgcccgtcacggat 882 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 1428 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 1369 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 1368 caacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 288 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 347 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 348 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 407 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 408 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 467 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 468 cgcgagttcaccagcctcttgccaatgttctc 499 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 575 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276 Query: 576 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 635 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 216 Query: 636 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 695 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 215 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 156 Query: 696 tccatacgaccatcacggat 715 |||||||| || |||||||| Sbjct: 155 tccatacgcccgtcacggat 136 Score = 123 bits (62), Expect = 9e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 286 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 345 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 346 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 405 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 406 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 465 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 466 cccgcgagttcaccagcctcttgccaatgttctc 499 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 575 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070 Query: 576 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 635 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1010 Query: 636 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 695 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1009 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 950 Query: 696 tccatacgaccatcacggat 715 |||||||| || |||||||| Sbjct: 949 tccatacgcccgtcacggat 930 Score = 123 bits (62), Expect = 9e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 286 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 345 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 346 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 405 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 406 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 465 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 466 cccgcgagttcaccagcctcttgccaatgttctc 499 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 113 bits (57), Expect = 8e-22 Identities = 85/93 (91%), Gaps = 1/93 (1%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||| Sbjct: 1560 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattcttgg 1502 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 1501 caacagggtcggtgcaaccttccggcacaggca 1469
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 575 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021 Query: 576 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 635 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 961 Query: 636 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 695 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 960 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 901 Query: 696 tccatacgaccatcacggat 715 |||||||| || |||||||| Sbjct: 900 tccatacgcccgtcacggat 881 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 1512 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 1453 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 1452 caacagggtcggtgcaaccttccggcacaggca 1420 Score = 123 bits (62), Expect = 9e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 286 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 345 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 346 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 405 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 406 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 465 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 466 cccgcgagttcaccagcctcttgccaatgttctc 499 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 575 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059 Query: 576 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 635 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 999 Query: 636 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 695 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 998 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 939 Query: 696 tccatacgaccatcacggat 715 |||||||| || |||||||| Sbjct: 938 tccatacgcccgtcacggat 919 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 1550 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 1491 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 1490 caacagggtcggtgcaaccttccggcacaggca 1458 Score = 123 bits (62), Expect = 9e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 286 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 345 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 346 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 405 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 406 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 465 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 466 cccgcgagttcaccagcctcttgccaatgttctc 499 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 575 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058 Query: 576 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 635 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 998 Query: 636 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 695 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 997 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 938 Query: 696 tccatacgaccatcacggat 715 |||||||| || |||||||| Sbjct: 937 tccatacgcccgtcacggat 918 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 1549 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 1490 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 1489 caacagggtcggtgcaaccttccggcacaggca 1457 Score = 123 bits (62), Expect = 9e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 286 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 345 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 346 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 405 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 406 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 465 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 466 cccgcgagttcaccagcctcttgccaatgttctc 499 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 575 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842 Query: 576 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 635 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 782 Query: 636 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 695 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 781 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 722 Query: 696 tccatacgaccatcacggat 715 |||||||| || |||||||| Sbjct: 721 tccatacgcccgtcacggat 702 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 1333 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 1274 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 1273 caacagggtcggtgcaaccttccggcacaggca 1241 Score = 123 bits (62), Expect = 9e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 286 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 345 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 346 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 405 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 406 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 465 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 466 cccgcgagttcaccagcctcttgccaatgttctc 499 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 575 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063 Query: 576 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 635 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1003 Query: 636 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 695 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 1002 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 943 Query: 696 tccatacgaccatcacggat 715 |||||||| || |||||||| Sbjct: 942 tccatacgcccgtcacggat 923 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 1554 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 1495 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 1494 caacagggtcggtgcaaccttccggcacaggca 1462 Score = 123 bits (62), Expect = 9e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 286 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 345 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 346 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 405 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 406 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 465 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 466 cccgcgagttcaccagcctcttgccaatgttctc 499 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 190 bits (96), Expect = 4e-45 Identities = 174/200 (87%) Strand = Plus / Minus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 575 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057 Query: 576 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 635 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 997 Query: 636 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttc 695 ||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||| Sbjct: 996 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaacttc 937 Query: 696 tccatacgaccatcacggat 715 |||||||| || |||||||| Sbjct: 936 tccatacgcccgtcacggat 917 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 1463 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 1404 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 1403 caacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 288 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 347 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 348 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 407 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 408 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 467 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 468 cgcgagttcaccagcctcttgccaatgttctc 499 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 170 bits (86), Expect = 4e-39 Identities = 275/338 (81%) Strand = Plus / Minus Query: 363 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 422 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 423 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 482 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 483 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 542 | |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 543 acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 602 ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | | Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 1003 Query: 603 ttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgata 662 | || || | |||||| ||| |||||||| ||||||| |||||||| || ||||| Sbjct: 1002 ctcaccacggcctcgtcggggacgttgtcggtgcggaagatgcccttgcacacgccgatg 943 Query: 663 cggtcgtcacgggtgggagcccagtagaacttctccat 700 ||||| || |||||||| |||||||||||||||||||| Sbjct: 942 cggtcctcccgggtgggcgcccagtagaacttctccat 905
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 151 bits (76), Expect = 4e-33 Identities = 181/216 (83%) Strand = Plus / Minus Query: 512 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 571 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184 Query: 572 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 631 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 1183 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 1124 Query: 632 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 691 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 1123 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 1064 Query: 692 cttctccatacgaccatcacggatcagaggagcgta 727 ||||||||| || || ||||||||||| |||||||| Sbjct: 1063 cttctccatgcgcccgtcacggatcaggggagcgta 1028 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 363 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 422 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 423 ttctcgactgtcatctttggctgctcgaa 451 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 149 bits (75), Expect = 2e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 573 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 632 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 108747 Query: 633 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 692 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 108748 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 108807 Query: 693 ttctccatacgaccatcacggat 715 ||||||||||| || |||||||| Sbjct: 108808 ttctccatacgcccgtcacggat 108830 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 283 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 342 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 343 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 402 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 403 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 462 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 463 cgtcccgcgagttcaccagcctcttgccaatgttctc 499 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Plus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 107160 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 107219 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 107220 caacagggtcggtgcaaccttccggcacaggca 107252 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 112456 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 112515 Query: 697 ccat 700 |||| Sbjct: 112516 ccat 112519 Score = 54.0 bits (27), Expect = 7e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 141 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 200 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 201 accttccggcacggg 215 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 565 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 471 gagttcaccagcctcttgccaatgttctc 499 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 149 bits (75), Expect = 2e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 573 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 632 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 30624 Query: 633 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 692 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 30625 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 30684 Query: 693 ttctccatacgaccatcacggat 715 ||||||||||| || |||||||| Sbjct: 30685 ttctccatacgcccgtcacggat 30707 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 283 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 342 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 343 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 402 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 403 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 462 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 463 cgtcccgcgagttcaccagcctcttgccaatgttctc 499 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Plus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 29041 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 29100 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 29101 caacagggtcggtgcaaccttccggcacaggca 29133 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 34333 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 34392 Query: 697 ccat 700 |||| Sbjct: 34393 ccat 34396 Score = 54.0 bits (27), Expect = 7e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 141 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 200 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 201 accttccggcacggg 215 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 565 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 471 gagttcaccagcctcttgccaatgttctc 499 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 149 bits (75), Expect = 2e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 573 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 632 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28303886 Query: 633 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 692 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28303887 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28303946 Query: 693 ttctccatacgaccatcacggat 715 ||||||||||| || |||||||| Sbjct: 28303947 ttctccatacgcccgtcacggat 28303969 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 283 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 342 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 343 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 402 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 403 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 462 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 463 cgtcccgcgagttcaccagcctcttgccaatgttctc 499 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Plus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 28302303 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 28302362 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 28302363 caacagggtcggtgcaaccttccggcacaggca 28302395 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 28307595 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 28307654 Query: 697 ccat 700 |||| Sbjct: 28307655 ccat 28307658 Score = 54.0 bits (27), Expect = 7e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 141 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 200 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 201 accttccggcacggg 215 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 565 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 471 gagttcaccagcctcttgccaatgttctc 499 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 149 bits (75), Expect = 2e-32 Identities = 126/143 (88%) Strand = Plus / Plus Query: 573 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 632 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28286335 Query: 633 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 692 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28286336 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28286395 Query: 693 ttctccatacgaccatcacggat 715 ||||||||||| || |||||||| Sbjct: 28286396 ttctccatacgcccgtcacggat 28286418 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 283 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 342 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 343 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 402 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 403 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 462 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 463 cgtcccgcgagttcaccagcctcttgccaatgttctc 499 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 129 bits (65), Expect = 1e-26 Identities = 86/93 (92%) Strand = Plus / Plus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 28284752 cttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 28284811 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 28284812 caacagggtcggtgcaaccttccggcacaggca 28284844 Score = 56.0 bits (28), Expect = 2e-04 Identities = 55/64 (85%) Strand = Plus / Plus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| | Sbjct: 28290044 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaacttgt 28290103 Query: 697 ccat 700 |||| Sbjct: 28290104 ccat 28290107 Score = 54.0 bits (27), Expect = 7e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 141 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 200 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 201 accttccggcacggg 215 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 565 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 471 gagttcaccagcctcttgccaatgttctc 499 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1075 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 1074 catacgtccatcacggatgagaggagcgta 1045
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1075 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 1074 catacgtccatcacggatgagaggagcgta 1045
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1104 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 1103 catacgtccatcacggatgagaggagcgta 1074
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 986 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 985 catacgtccatcacggatgagaggagcgta 956
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 139 bits (70), Expect = 1e-29 Identities = 145/170 (85%) Strand = Plus / Minus Query: 558 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcg 617 |||||||| || ||||| ||||| || |||||||||||||||| |||||| || || Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgacaacgtggtcc 1105 Query: 618 tcactgacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtg 677 ||| |||||||||||| ||||||||| || |||||||||||||| ||||||||| Sbjct: 1104 tcaggaacattgtcggtcctgaagataccggtggcaacaccgatacggtcctcacgggtg 1045 Query: 678 ggagcccagtagaacttctccatacgaccatcacggatcagaggagcgta 727 |||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1044 ggagcccagtagaacttctccatacgaccatcacggataaggggagcgta 995
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 960 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 901 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 900 catacgtccatcacggatgagaggagcgta 871
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Plus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 14154 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 14213 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 14214 catacgtccatcacggatgagaggagcgta 14243
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 989 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 988 catacgtccatcacggatgagaggagcgta 959
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1037 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 978 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 977 catacgtccatcacggatgagaggagcgta 948
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 986 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 985 catacgtccatcacggatgagaggagcgta 956
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 989 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 988 catacgtccatcacggatgagaggagcgta 959
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 1104 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 1103 catacgtccatcacggatgagaggagcgta 1074
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 139 bits (70), Expect = 1e-29 Identities = 85/90 (94%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 |||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||| Sbjct: 3129 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaacttctc 3070 Query: 698 catacgaccatcacggatcagaggagcgta 727 |||||| ||||||||||| ||||||||||| Sbjct: 3069 catacgtccatcacggatgagaggagcgta 3040
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Minus Query: 518 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 577 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015 Query: 578 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 637 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 1014 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 955 Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 954 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 895 Query: 698 catacgaccatcacggatcagaggagcgtagag 730 ||||||||| |||||||| || || |||||||| Sbjct: 894 catacgaccgtcacggatgaggggggcgtagag 862 Score = 103 bits (52), Expect = 8e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 284 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 343 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 344 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 403 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 404 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 463 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 464 gtcccgcgagttcaccagcctctt 487 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 133 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 192 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 193 tcggtgcaaccttc 206 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Minus Query: 518 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 577 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878 Query: 578 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 637 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 877 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 818 Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 817 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 758 Query: 698 catacgaccatcacggatcagaggagcgtagag 730 ||||||||| |||||||| || || |||||||| Sbjct: 757 catacgaccgtcacggatgaggggggcgtagag 725 Score = 97.6 bits (49), Expect = 5e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 291 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 350 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 351 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 410 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 411 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 470 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 471 gagttcaccagcctctt 487 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 133 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 192 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 193 tcggtgcaaccttc 206 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Minus Query: 518 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 577 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714 Query: 578 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 637 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 713 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 654 Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 653 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 594 Query: 698 catacgaccatcacggatcagaggagcgtagag 730 ||||||||| |||||||| || || |||||||| Sbjct: 593 catacgaccgtcacggatgaggggggcgtagag 561 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 284 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 343 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 344 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 403 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 404 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 463 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 464 gtcccgcgagttcaccagcctcttgcc 490 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 133 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 192 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 193 tcggtgcaaccttc 206 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 129 bits (65), Expect = 1e-26 Identities = 176/213 (82%) Strand = Plus / Minus Query: 518 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 577 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908 Query: 578 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 637 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 907 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 848 Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 ||||||||| ||||||| |||| ||||| || | |||||||||||||||||||||||| Sbjct: 847 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaacttctc 788 Query: 698 catacgaccatcacggatcagaggagcgtagag 730 ||||||||| |||||||| || || |||||||| Sbjct: 787 catacgaccgtcacggatgaggggggcgtagag 755 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 291 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 350 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 351 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 410 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 411 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 470 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 471 gagttcaccagcctcttgcc 490 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 133 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 192 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 193 tcggtgcaaccttc 206 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 651 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatca 710 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 2813 cagacaccaatacggtcctcacgggtgggagcccagtagaacttctccatacgaccatca 2754 Query: 711 cggatcagaggagcgta 727 ||||| || |||||||| Sbjct: 2753 cggataaggggagcgta 2737
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 129 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 188 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 189 ttggtcggtgcaaccttccggcacgggca 217 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 121 bits (61), Expect = 3e-24 Identities = 73/77 (94%) Strand = Plus / Minus Query: 651 cagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatca 710 |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct: 1185 cagacaccaatacggtcctcacgggtgggagcccagtagaacttctccatacgaccatca 1126 Query: 711 cggatcagaggagcgta 727 ||||| || |||||||| Sbjct: 1125 cggataaggggagcgta 1109 Score = 44.1 bits (22), Expect = 0.64 Identities = 58/70 (82%) Strand = Plus / Minus Query: 531 tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 590 ||||||||||| || ||||| | || || ||||||||||| || |||||||| |||||| Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246 Query: 591 gtgtcgacga 600 | ||| |||| Sbjct: 1245 gcgtcaacga 1236
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 111 bits (56), Expect = 3e-21 Identities = 92/104 (88%) Strand = Plus / Minus Query: 624 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 683 |||||||| ||| ||| ||||||||||||||||| |||||||| || | ||| |||||| Sbjct: 1043 acattgtcagtcctgaaaatacccttgcagacaccaatacggtcttccctggtaggagcc 984 Query: 684 cagtagaacttctccatacgaccatcacggatcagaggagcgta 727 |||||||| || |||||||||||||||||||| ||||||||||| Sbjct: 983 cagtagaatttttccatacgaccatcacggataagaggagcgta 940 Score = 44.1 bits (22), Expect = 0.64 Identities = 43/50 (86%) Strand = Plus / Minus Query: 312 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 361 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase activase (Rca) gene, partial sequence Length = 648 Score = 107 bits (54), Expect = 5e-20 Identities = 90/102 (88%) Strand = Plus / Minus Query: 623 gacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagc 682 ||||||||| ||| ||||||||| |||| ||||| |||||||| ||||| ||||| || Sbjct: 248 gacattgtcagtcctgaagataccagtgcaaacaccaatacggtcctcacgagtgggtgc 189 Query: 683 ccagtagaacttctccatacgaccatcacggatcagaggagc 724 ||||||||| ||||||||||||||||||||||| |||||||| Sbjct: 188 ccagtagaatttctccatacgaccatcacggatgagaggagc 147
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 101 bits (51), Expect = 3e-18 Identities = 165/203 (81%) Strand = Plus / Minus Query: 528 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 587 ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || ||| Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624 Query: 588 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 647 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 623 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 564 Query: 648 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacca 707 |||||||| ||||| ||||| || |||||||| |||||||||||||||||||| || || Sbjct: 563 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttctccatgcggccg 504 Query: 708 tcacggatcagaggagcgtagag 730 || ||||| || || |||||||| Sbjct: 503 tcgcggatgagcggcgcgtagag 481 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 292 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 351 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 352 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 411 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 412 actctagcagcttctcgactgtcatctttggctgctcgaa 451 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 101 bits (51), Expect = 3e-18 Identities = 72/79 (91%) Strand = Plus / Minus Query: 649 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 708 ||||||| || ||||| || || ||||||||||||||||||||||||||||||||||| | Sbjct: 1034 tgcagactccaatacgatcttcgcgggtgggagcccagtagaacttctccatacgaccgt 975 Query: 709 cacggatcagaggagcgta 727 ||||||| ||||||||||| Sbjct: 974 cacggatgagaggagcgta 956 Score = 56.0 bits (28), Expect = 2e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 320 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 379 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 380 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 439 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 440 tggctgctcgaa 451 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232 Score = 44.1 bits (22), Expect = 0.64 Identities = 64/78 (82%) Strand = Plus / Minus Query: 518 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 577 |||||| | ||| ||||||||||| |||| ||| | || ||||| || || ||||| || Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106 Query: 578 ttgtcctgggaaggtgtc 595 ||| |||||||||||||| Sbjct: 1105 ttggcctgggaaggtgtc 1088
>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase (pTA1.1) Length = 1011 Score = 99.6 bits (50), Expect = 1e-17 Identities = 161/198 (81%) Strand = Plus / Minus Query: 527 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 586 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 462 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 403 Query: 587 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 646 |||||| ||||| ||||| || |||| || ||| || ||||||||| ||| ||||| Sbjct: 402 gaaggtatcgacaatctttacaacagcttcctcaggcacgttgtcggtcctgaaaatacc 343 Query: 647 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 706 |||||| ||||| || | || || | || || ||||| |||||||||||||||||||| Sbjct: 342 cttgcaaacaccaattctatcttccctagttggtgcccaatagaacttctccatacgacc 283 Query: 707 atcacggatcagaggagc 724 ||||||||| |||||||| Sbjct: 282 atcacggataagaggagc 265
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 97.6 bits (49), Expect = 5e-17 Identities = 82/93 (88%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 |||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct: 133 cttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttgg 74 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||| |||||||||||||| |||| Sbjct: 73 caacagggtcgggtcaaccttccggcacaggca 41
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 292 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 351 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 352 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 411 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 412 actctagcagcttctcgactgtcatctttggctgctcgaa 451 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 93.7 bits (47), Expect = 8e-16 Identities = 164/203 (80%) Strand = Plus / Minus Query: 528 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 587 ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || ||| Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019 Query: 588 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 647 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 1018 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 959 Query: 648 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacca 707 |||||||| ||||| ||||| || |||||||| |||||||||||||||||||| || || Sbjct: 958 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttctccatgcggccg 899 Query: 708 tcacggatcagaggagcgtagag 730 || ||||| || || |||||||| Sbjct: 898 tcgcggatgagcggcgcgtagag 876
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 292 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 351 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 352 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 411 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 412 actctagcagcttctcgactgtcatctttggctgctcgaa 451 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 83.8 bits (42), Expect = 7e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| ||||||||||| ||||| ||||| || |||||||| |||||||||||||||| Sbjct: 969 ggaagatgcccttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaacttct 910 Query: 697 ccatacgaccatcacggatcagaggagcgtagag 730 |||| || || || ||||| || || |||||||| Sbjct: 909 ccatgcggccgtcgcggatgagcggcgcgtagag 876
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| ||||| Sbjct: 872 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaatttctc 813 Query: 698 catacgaccatcacggatcagaggagcgta 727 ||||||||||||||| || ||||||||||| Sbjct: 812 catacgaccatcacgaatgagaggagcgta 783
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 91.7 bits (46), Expect = 3e-15 Identities = 79/90 (87%) Strand = Plus / Minus Query: 638 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctc 697 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| ||||| Sbjct: 1045 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaatttctc 986 Query: 698 catacgaccatcacggatcagaggagcgta 727 ||||||||||||||| || ||||||||||| Sbjct: 985 catacgaccatcacgaatgagaggagcgta 956
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 87.7 bits (44), Expect = 5e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 649 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 708 |||||||||| ||||| || || | || ||||||||||||||||||||||||||||||| Sbjct: 456 tgcagacaccaatacgatcttctctagtaggagcccagtagaacttctccatacgaccat 397 Query: 709 cacggatcagaggagc 724 ||||||| |||||||| Sbjct: 396 cacggatgagaggagc 381 Score = 48.1 bits (24), Expect = 0.041 Identities = 75/92 (81%) Strand = Plus / Minus Query: 516 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 575 |||||||| | ||| ||||| |||||||| | ||| | || |||||||| || || ||| Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530 Query: 576 gattgtcctgggaaggtgtcgacgatcttgac 607 ||||| || ||||||||||| || |||||||| Sbjct: 529 gattggccagggaaggtgtcaacaatcttgac 498
>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence Length = 253 Score = 87.7 bits (44), Expect = 5e-14 Identities = 68/76 (89%) Strand = Plus / Minus Query: 649 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgaccat 708 |||||||||| ||||| ||||| ||||| || ||||||||||| |||||||||||||||| Sbjct: 143 tgcagacaccaatacgatcgtcgcgggttggtgcccagtagaatttctccatacgaccat 84 Query: 709 cacggatcagaggagc 724 ||||||| || ||||| Sbjct: 83 cacggataaggggagc 68
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 85.7 bits (43), Expect = 2e-13 Identities = 136/167 (81%) Strand = Plus / Minus Query: 534 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 593 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559 Query: 594 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 653 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 558 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 499 Query: 654 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 700 || ||||| |||||||| |||||||| |||||||||||||| ||||| Sbjct: 498 acgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgtccat 452
>gb|AF041068.1|AF041068 Phaseolus vulgaris rubisco activase (Rca1) mRNA, complete cds Length = 1627 Score = 85.7 bits (43), Expect = 2e-13 Identities = 82/95 (86%) Strand = Plus / Minus Query: 630 tcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtag 689 |||||| |||| || |||||||| ||||| || ||||| || | || || ||||||||| Sbjct: 1042 tcggtccggaaaattcccttgcaaacaccaatgcggtcttcccttgttggtgcccagtag 983 Query: 690 aacttctccatacgaccatcacggatcagaggagc 724 |||||||||||||||||||||||||| |||||||| Sbjct: 982 aacttctccatacgaccatcacggatgagaggagc 948
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 83.8 bits (42), Expect = 7e-13 Identities = 66/74 (89%) Strand = Plus / Minus Query: 648 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacca 707 ||||||||||| |||||||| || | |||||| ||||||||||| ||||||||||| ||| Sbjct: 1019 ttgcagacaccaatacggtcctccctggtgggtgcccagtagaatttctccatacggcca 960 Query: 708 tcacggatcagagg 721 |||||||| ||||| Sbjct: 959 tcacggataagagg 946
>emb|Z14980.1|NTRCAJQ4 N.tabacum Rca gene for ribulose bisphosphate carboxylase activase (pJQ4) Length = 1655 Score = 83.8 bits (42), Expect = 7e-13 Identities = 159/198 (80%) Strand = Plus / Minus Query: 527 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 586 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 1106 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 1047 Query: 587 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 646 |||||| ||||| ||||| | || | || ||| || ||||||||| ||| ||||| Sbjct: 1046 gaaggtatcgacaatctttataacggcttcctcaggcacgttgtcggtcctgaaaatacc 987 Query: 647 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttctccatacgacc 706 |||||| ||||| || | || || | || || ||||| |||||||||||||||||||| Sbjct: 986 cttgcaaacaccaattctatcttccctagttggtgcccaatagaacttctccatacgacc 927 Query: 707 atcacggatcagaggagc 724 ||||||||| |||||||| Sbjct: 926 atcacggataagaggagc 909
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 79.8 bits (40), Expect = 1e-11 Identities = 82/96 (85%) Strand = Plus / Minus Query: 629 gtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagta 688 ||||||| ||| ||||| ||||| ||||||||||||||||| | || || |||||||| Sbjct: 853 gtcggtcctgaaaatacctttgcaaacaccgatacggtcgtccctagttggtgcccagta 794 Query: 689 gaacttctccatacgaccatcacggatcagaggagc 724 || |||||||||||||| |||||||| |||||||| Sbjct: 793 aaatttctccatacgaccgtcacggatgagaggagc 758 Score = 48.1 bits (24), Expect = 0.041 Identities = 54/64 (84%) Strand = Plus / Minus Query: 537 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 596 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886 Query: 597 acga 600 |||| Sbjct: 885 acga 882
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 1e-11 Identities = 97/116 (83%) Strand = Plus / Minus Query: 309 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 368 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 369 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 424 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>gb|AF037361.1|AF037361 Lycopersicon pennellii rubisco activase mRNA, complete cds Length = 1656 Score = 79.8 bits (40), Expect = 1e-11 Identities = 43/44 (97%) Strand = Plus / Minus Query: 681 gcccagtagaacttctccatacgaccatcacggatcagaggagc 724 ||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 963 gcccagtagaacttctccatacgaccatcacggataagaggagc 920
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 77.8 bits (39), Expect = 5e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 697 ccatacgaccatcacggat 715 |||| || || |||||||| Sbjct: 469 ccatgcgcccgtcacggat 451
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 5e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 697 ccatacgaccatcacggat 715 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 77.8 bits (39), Expect = 5e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 476 Query: 697 ccatacgaccatcacggat 715 |||| || || |||||||| Sbjct: 475 ccatgcgcccgtcacggat 457
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 5e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 697 ccatacgaccatcacggat 715 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 77.8 bits (39), Expect = 5e-11 Identities = 135/167 (80%) Strand = Plus / Minus Query: 534 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 593 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567 Query: 594 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 653 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 566 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 507 Query: 654 acaccgatacggtcgtcacgggtgggagcccagtagaacttctccat 700 || ||||| ||||| || |||||||| |||||||||||||| ||||| Sbjct: 506 acgccgatgcggtcctcccgggtgggcgcccagtagaacttgtccat 460
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 5e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 697 ccatacgaccatcacggat 715 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 5e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 697 ccatacgaccatcacggat 715 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 77.8 bits (39), Expect = 5e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 697 ccatacgaccatcacggat 715 |||| || || |||||||| Sbjct: 471 ccatgcgcccgtcacggat 453
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 77.8 bits (39), Expect = 5e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 474 Query: 697 ccatacgaccatcacggat 715 |||| || || |||||||| Sbjct: 473 ccatgcgcccgtcacggat 455
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 73.8 bits (37), Expect = 7e-10 Identities = 79/93 (84%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 |||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| |||| Sbjct: 4541411 cttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgttgg 4541352 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 4541351 caacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 73.8 bits (37), Expect = 7e-10 Identities = 79/93 (84%) Strand = Plus / Minus Query: 125 cttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttgg 184 |||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| |||| Sbjct: 84785 cttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgttgg 84726 Query: 185 cattttggtcggtgcaaccttccggcacgggca 217 || |||||||||||||||||||||| |||| Sbjct: 84725 caacagggtcggtgcaaccttccggcacaggca 84693
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 71.9 bits (36), Expect = 3e-09 Identities = 81/96 (84%) Strand = Plus / Minus Query: 629 gtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagta 688 ||||||| ||| ||||| ||||| ||||||| ||||||||| | || || |||||||| Sbjct: 852 gtcggtcctgaaaatacctttgcaaacaccgacacggtcgtccctagttggtgcccagta 793 Query: 689 gaacttctccatacgaccatcacggatcagaggagc 724 || |||||||||||||| |||||||| |||||||| Sbjct: 792 aaatttctccatacgaccgtcacggatgagaggagc 757 Score = 48.1 bits (24), Expect = 0.041 Identities = 54/64 (84%) Strand = Plus / Minus Query: 537 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 596 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885 Query: 597 acga 600 |||| Sbjct: 884 acga 881
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 71.9 bits (36), Expect = 3e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 681 gcccagtagaacttctccatacgaccatcacggatcagaggagc 724 ||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 222 gcccagtagaacttctccatacgaccatcacggataagtggagc 179 Score = 44.1 bits (22), Expect = 0.64 Identities = 43/50 (86%) Strand = Plus / Minus Query: 558 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 607 |||||||||||||| || |||||||| |||||| | || || |||||||| Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 474 Query: 697 ccat 700 |||| Sbjct: 473 ccat 470
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 697 ccat 700 |||| Sbjct: 471 ccat 468
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 697 ccat 700 |||| Sbjct: 469 ccat 466
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 470 Query: 697 ccat 700 |||| Sbjct: 469 ccat 466
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 472 Query: 697 ccat 700 |||| Sbjct: 471 ccat 468
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 637 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaacttct 696 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| | Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaacttgt 476 Query: 697 ccat 700 |||| Sbjct: 475 ccat 472
>gb|U35111.1|NTU35111 Nicotiana tabacum rubisco activase precursor (Rca) mRNA, complete cds Length = 1674 Score = 71.9 bits (36), Expect = 3e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 681 gcccagtagaacttctccatacgaccatcacggatcagaggagc 724 ||||||||||||||||||||||||||||||||||| || ||||| Sbjct: 982 gcccagtagaacttctccatacgaccatcacggataagtggagc 939
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 554 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 595 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072 Score = 63.9 bits (32), Expect = 7e-07 Identities = 77/92 (83%) Strand = Plus / Minus Query: 624 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 683 |||||||||||| ||| ||||| |||| |||||||| | || || | |||||| ||| Sbjct: 1043 acattgtcggtcctgaaaatacctgtgcaaacaccgatcctatcttccctggtgggtgcc 984 Query: 684 cagtagaacttctccatacgaccatcacggat 715 ||||| ||||||||||||||||| |||||||| Sbjct: 983 cagtaaaacttctccatacgaccgtcacggat 952
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 65.9 bits (33), Expect = 2e-07 Identities = 39/41 (95%) Strand = Plus / Minus Query: 681 gcccagtagaacttctccatacgaccatcacggatcagagg 721 ||||||||||| ||||||||||||||||||||||| ||||| Sbjct: 999 gcccagtagaatttctccatacgaccatcacggataagagg 959 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 554 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 607 |||||||||||| || ||||| |||||||| |||||| | |||||||||||||| Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 65.9 bits (33), Expect = 2e-07 Identities = 69/81 (85%) Strand = Plus / Minus Query: 635 ctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 694 ||||||||| ||| ||||||| ||||| ||||| ||||||||||| ||||||| |||| Sbjct: 1861 ctggaagattcccatgcagacgccgatgcggtcctcacgggtggggttccagtagtactt 1802 Query: 695 ctccatacgaccatcacggat 715 |||||| || || |||||||| Sbjct: 1801 ctccatgcggccgtcacggat 1781 Score = 42.1 bits (21), Expect = 2.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 363 agctgcacacgcttgacattgtcctgctc 391 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|AF126870.2|AF126870 Vigna radiata rubisco activase (Rca) mRNA, complete cds; nuclear gene for chloroplast product Length = 1671 Score = 63.9 bits (32), Expect = 7e-07 Identities = 41/44 (93%) Strand = Plus / Minus Query: 681 gcccagtagaacttctccatacgaccatcacggatcagaggagc 724 ||||||||||||||||||||||| |||||||| || |||||||| Sbjct: 995 gcccagtagaacttctccatacgcccatcacgaatgagaggagc 952
>gb|AF114155.1|AF114155 Artemisia annua ribulose-1,5-bisphosphate carboxylase/oxygenase activase pseudogene, partial sequence Length = 472 Score = 61.9 bits (31), Expect = 3e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 678 ggagcccagtagaacttctccatacgaccatcacggatcagaggagc 724 ||||||||||||||||| |||||||||||||| ||||| || ||||| Sbjct: 419 ggagcccagtagaacttttccatacgaccatcgcggataaggggagc 373
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 534 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 593 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664 Query: 594 tc 595 || Sbjct: 2663 tc 2662
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 534 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 593 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974 Query: 594 tc 595 || Sbjct: 973 tc 972
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 58.0 bits (29), Expect = 4e-05 Identities = 68/79 (86%), Gaps = 4/79 (5%) Strand = Plus / Minus Query: 651 cagacaccgatacggtcgtcacgggtgggagcccagt--agaacttctccatacgaccat 708 ||||||||||||||||| |||||||| || ||||| |||||||||||||||| |||| Sbjct: 1016 cagacaccgatacggtcttcacgggtcggg--ccagtcaagaacttctccatacgtccat 959 Query: 709 cacggatcagaggagcgta 727 || |||| |||||| |||| Sbjct: 958 caaggatgagaggaccgta 940
>emb|AJ271896.1|PHA271896 Pinus halepensis partial mRNA for rubisco activase (rca gene) Length = 678 Score = 54.0 bits (27), Expect = 7e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 683 ccagtagaacttctccatacgaccatcacggatca 717 ||||||||||||||||||||| |||||||| |||| Sbjct: 678 ccagtagaacttctccatacgcccatcacgaatca 644
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 52.0 bits (26), Expect = 0.003 Identities = 68/82 (82%) Strand = Plus / Minus Query: 517 cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 576 ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || | Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102 Query: 577 attgtcctgggaaggtgtcgac 598 | |||||||||||||||||||| Sbjct: 1101 actgtcctgggaaggtgtcgac 1080 Score = 52.0 bits (26), Expect = 0.003 Identities = 53/62 (85%) Strand = Plus / Minus Query: 660 atacggtcgtcacgggtgggagcccagtagaacttctccatacgaccatcacggatcaga 719 ||||| || ||||| || |||||||||||||| || ||||| ||||||||||| || ||| Sbjct: 1018 atacgatcttcacgagttggagcccagtagaatttatccatccgaccatcacgaatgaga 959 Query: 720 gg 721 || Sbjct: 958 gg 957
>gb|AC130652.27| Medicago truncatula clone mth1-1k12, complete sequence Length = 105218 Score = 48.1 bits (24), Expect = 0.041 Identities = 39/44 (88%) Strand = Plus / Plus Query: 681 gcccagtagaacttctccatacgaccatcacggatcagaggagc 724 ||||| ||||| |||||||||||||| ||||| || |||||||| Sbjct: 103825 gcccaatagaatttctccatacgaccgtcacgaataagaggagc 103868
>gb|AC129090.22| Medicago truncatula clone mth2-14i8, complete sequence Length = 163160 Score = 48.1 bits (24), Expect = 0.041 Identities = 39/44 (88%) Strand = Plus / Plus Query: 681 gcccagtagaacttctccatacgaccatcacggatcagaggagc 724 ||||| ||||| |||||||||||||| ||||| || |||||||| Sbjct: 82850 gcccaatagaatttctccatacgaccgtcacgaataagaggagc 82893
>gb|AC135233.19| Medicago truncatula clone mth2-14c14, complete sequence Length = 108028 Score = 46.1 bits (23), Expect = 0.16 Identities = 41/47 (87%) Strand = Plus / Plus Query: 666 tcgtcacgggtgggagcccagtagaacttctccatacgaccatcacg 712 |||||||| || || ||||||||||| || |||||||| |||||||| Sbjct: 6892 tcgtcacgagtaggtgcccagtagaatttttccatacgtccatcacg 6938
>ref|NM_105969.1| Arabidopsis thaliana ATP binding / ATPase AT1G73110 mRNA, complete cds Length = 1437 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 683 ccagtagaacttctccatacgaccatcacggatcagaggagc 724 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 970 ccagtagaacttctccattcttccttcacggatcagtggagc 929
>gb|AY078044.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds Length = 1299 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 683 ccagtagaacttctccatacgaccatcacggatcagaggagc 724 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 936 ccagtagaacttctccattcttccttcacggatcagtggagc 895
>gb|AF361834.1| Arabidopsis thaliana At1g73110/F3N23_39 mRNA, complete cds Length = 1437 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 683 ccagtagaacttctccatacgaccatcacggatcagaggagc 724 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 970 ccagtagaacttctccattcttccttcacggatcagtggagc 929
>emb|BX813694.1|CNS0ADV2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB33ZF10 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1426 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 683 ccagtagaacttctccatacgaccatcacggatcagaggagc 724 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 998 ccagtagaacttctccattcttccttcacggatcagtggagc 957
>emb|BX815704.1|CNS0AARM Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS85ZG11 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1496 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 683 ccagtagaacttctccatacgaccatcacggatcagaggagc 724 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 944 ccagtagaacttctccattcttccttcacggatcagtggagc 903
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Minus Query: 325 catcacccagagctgcctggct 346 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>dbj|AK118942.1| Arabidopsis thaliana At1g73110 mRNA for unknown protein, complete cds, clone: RAFL21-28-D21 Length = 1447 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Minus Query: 683 ccagtagaacttctccatacgaccatcacggatcagaggagc 724 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 957 ccagtagaacttctccattcttccttcacggatcagtggagc 916
>gb|AC008017.2|AC008017 Arabidopsis thaliana chromosome I BAC F3N23 genomic sequence, complete sequence Length = 116944 Score = 44.1 bits (22), Expect = 0.64 Identities = 37/42 (88%) Strand = Plus / Plus Query: 683 ccagtagaacttctccatacgaccatcacggatcagaggagc 724 |||||||||||||||||| | || ||||||||||| ||||| Sbjct: 97615 ccagtagaacttctccattcttccttcacggatcagtggagc 97656
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 44.1 bits (22), Expect = 0.64 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 aatatatttagagatatattaa 49 |||||||||||||||||||||| Sbjct: 67942 aatatatttagagatatattaa 67963
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 30 tatatttagagatatattaac 50 ||||||||||||||||||||| Sbjct: 12315 tatatttagagatatattaac 12335
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tcagatattaaaagtggcata 124 ||||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcata 141078
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 104 tcagatattaaaagtggcata 124 ||||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcata 142584
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 104 tcagatattaaaagtggcata 124 ||||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcata 95910
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 585 gggaaggtgtcgacgatcttg 605 ||||||||||||||||||||| Sbjct: 3653 gggaaggtgtcgacgatcttg 3673
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 tatatttagagatatattaac 50 ||||||||||||||||||||| Sbjct: 66387 tatatttagagatatattaac 66367
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 aaacatcagatattaaaagtg 119 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 247 atgcagcaagagatggtgggt 267 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 99 aaacatcagatattaaaagtg 119 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 aaacatcagatattaaaagtg 119 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 2.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 30 tatatttagagatatattaac 50 ||||||||||||||||||||| Sbjct: 6217 tatatttagagatatattaac 6197 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,943,844 Number of Sequences: 3902068 Number of extensions: 4943844 Number of successful extensions: 91960 Number of sequences better than 10.0: 116 Number of HSP's better than 10.0 without gapping: 116 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91510 Number of HSP's gapped (non-prelim): 382 length of query: 730 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 707 effective length of database: 17,143,297,704 effective search space: 12120311476728 effective search space used: 12120311476728 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)