ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3d22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DRI_DROME (Q24573) Protein dead ringer (Protein retained) 30 6.3
2UVRA_CLOPE (Q8XNI5) UvrABC system protein A (UvrA protein) (Exci... 30 8.2

>DRI_DROME (Q24573) Protein dead ringer (Protein retained)|
          Length = 911

 Score = 30.0 bits (66), Expect = 6.3
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 19  ADKFYDTSNPLQLQGHKHIQQRHL*QLNKKGVWNQP 126
           +   +D S P Q+ GH H Q  HL + +   + N P
Sbjct: 691 SSSMHDDSEPQQMNGHHHHQTHHLDKSDDSAIENSP 726



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>UVRA_CLOPE (Q8XNI5) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 939

 Score = 29.6 bits (65), Expect = 8.2
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -2

Query: 343 DVMILVSIVQPLLEEINAILV-KHQLDMLKC 254
           DV  LV I+Q L++  N ++V +H LDM+KC
Sbjct: 866 DVNRLVKILQRLVDGGNTVIVIEHNLDMIKC 896


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,241,845
Number of Sequences: 219361
Number of extensions: 1685474
Number of successful extensions: 3399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3399
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6200242422
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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