ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal3d20 |
|---|---|
| Clone Library Name | barley_pub |
>RL38_ARATH (O22860) 60S ribosomal protein L38| Length = 69 Score = 127 bits (319), Expect = 1e-29 Identities = 61/69 (88%), Positives = 67/69 (97%) Frame = -2 Query: 423 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSL 244 MPKQIHEIKDFLLTARRKDARSV+IKR+KD VKFKVRCSRYLYTLCVFD +KA+KLKQSL Sbjct: 1 MPKQIHEIKDFLLTARRKDARSVKIKRSKDIVKFKVRCSRYLYTLCVFDQEKADKLKQSL 60 Query: 243 PPGLSVQEV 217 PPGLSVQ++ Sbjct: 61 PPGLSVQDL 69
>RL38_LYCES (P46291) 60S ribosomal protein L38| Length = 69 Score = 120 bits (300), Expect = 2e-27 Identities = 57/69 (82%), Positives = 65/69 (94%) Frame = -2 Query: 423 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSL 244 MPKQIHEIKDFLLTARRKDAR+V+IK+ KD VKFKVRCS+YLYTLCV D +KA+KLKQSL Sbjct: 1 MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSL 60 Query: 243 PPGLSVQEV 217 PPGLSVQ++ Sbjct: 61 PPGLSVQDL 69
>RL38_RAT (P63174) 60S ribosomal protein L38| Length = 69 Score = 107 bits (267), Expect = 1e-23 Identities = 51/68 (75%), Positives = 61/68 (89%) Frame = -2 Query: 420 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLP 241 P++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLP Sbjct: 1 PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 60 Query: 240 PGLSVQEV 217 PGL+V+E+ Sbjct: 61 PGLAVKEL 68
>RL38_HUMAN (P63173) 60S ribosomal protein L38| Length = 69 Score = 107 bits (267), Expect = 1e-23 Identities = 51/68 (75%), Positives = 61/68 (89%) Frame = -2 Query: 420 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLP 241 P++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLP Sbjct: 1 PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 60 Query: 240 PGLSVQEV 217 PGL+V+E+ Sbjct: 61 PGLAVKEL 68
>RL38_MACFA (Q8HXB9) Ribosomal protein L38| Length = 69 Score = 107 bits (266), Expect = 2e-23 Identities = 51/67 (76%), Positives = 60/67 (89%) Frame = -2 Query: 420 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLP 241 P++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLP Sbjct: 1 PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 60 Query: 240 PGLSVQE 220 PGL+V+E Sbjct: 61 PGLAVKE 67
>RL38_MOUSE (Q9JJI8) 60S ribosomal protein L38| Length = 69 Score = 106 bits (264), Expect = 3e-23 Identities = 50/68 (73%), Positives = 61/68 (89%) Frame = -2 Query: 420 PKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSLP 241 P++I EIKDFLLTARRKDA+SV+IK+ KD VKFKVRCSRYLYTL + D +KA KLKQSLP Sbjct: 1 PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKEKAEKLKQSLP 60 Query: 240 PGLSVQEV 217 PGL+V+++ Sbjct: 61 PGLAVKDL 68
>RL38_CAEEL (O17570) 60S ribosomal protein L38| Length = 70 Score = 99.0 bits (245), Expect = 5e-21 Identities = 47/69 (68%), Positives = 57/69 (82%) Frame = -2 Query: 423 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSL 244 MPK+I EIKDFL+ ARRKDA+SV+IK+ + KFKVRC+ YLYTL V D DKA KLKQSL Sbjct: 1 MPKEIKEIKDFLVKARRKDAKSVKIKKNSNNTKFKVRCASYLYTLVVADKDKAEKLKQSL 60 Query: 243 PPGLSVQEV 217 PPG+ V+E+ Sbjct: 61 PPGIQVKEL 69
>RL38_OSTOS (O61570) 60S ribosomal protein L38| Length = 70 Score = 97.1 bits (240), Expect = 2e-20 Identities = 49/69 (71%), Positives = 56/69 (81%) Frame = -2 Query: 423 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQSL 244 MPKQI EIKDFL+ ARRKDA+ V+IK+ VKFKVRCSRYL+TL V D DKA KLKQSL Sbjct: 1 MPKQITEIKDFLVLARRKDAKIVKIKKNSLNVKFKVRCSRYLFTLVVNDKDKAEKLKQSL 60 Query: 243 PPGLSVQEV 217 PPG+ V E+ Sbjct: 61 PPGIQVIEL 69
>RL38A_SCHPO (Q9USR7) 60S ribosomal protein L38-1| Length = 74 Score = 88.6 bits (218), Expect = 6e-18 Identities = 47/70 (67%), Positives = 54/70 (77%), Gaps = 1/70 (1%) Frame = -2 Query: 423 MPKQIHEIKDFLLTARRKDARSVRIKR-TKDAVKFKVRCSRYLYTLCVFDADKANKLKQS 247 MP+QI +IK FL ARRKDA S RIK+ T VKFK+RCS+YLYTL V DA KA KL+QS Sbjct: 1 MPRQISDIKQFLEIARRKDATSARIKKNTNKDVKFKLRCSKYLYTLVVADAKKAEKLRQS 60 Query: 246 LPPGLSVQEV 217 LPP L+V EV Sbjct: 61 LPPDLTVTEV 70
>RL38B_SCHPO (Q09900) 60S ribosomal protein L38-2| Length = 74 Score = 84.7 bits (208), Expect = 9e-17 Identities = 44/70 (62%), Positives = 54/70 (77%), Gaps = 1/70 (1%) Frame = -2 Query: 423 MPKQIHEIKDFLLTARRKDARSVRIKRTKD-AVKFKVRCSRYLYTLCVFDADKANKLKQS 247 MP+Q+ +IK FL A R DA S R+K+ ++ AVKFK+RCSRYLYTL V DA KA KL+QS Sbjct: 1 MPRQVTDIKLFLQLAHRGDATSARVKKNQNKAVKFKLRCSRYLYTLVVADAKKAEKLRQS 60 Query: 246 LPPGLSVQEV 217 LPP L+V EV Sbjct: 61 LPPALTVTEV 70
>RL38_NEUCR (Q9C2B9) 60S ribosomal protein L38| Length = 80 Score = 80.1 bits (196), Expect = 2e-15 Identities = 39/71 (54%), Positives = 52/71 (73%), Gaps = 2/71 (2%) Frame = -2 Query: 423 MPKQIHEIKDFLLTARRKDARSVRIKRTK--DAVKFKVRCSRYLYTLCVFDADKANKLKQ 250 MP++I +IK F+ RRKDA + RIK+ K +KFKVRC +YLYTL + D+DKA KLK Sbjct: 1 MPQEIGDIKKFIEICRRKDASAARIKKNKATQQIKFKVRCQKYLYTLVLKDSDKAEKLKA 60 Query: 249 SLPPGLSVQEV 217 SLPP L++ +V Sbjct: 61 SLPPSLTIADV 71
>RL38_YEAST (P49167) 60S ribosomal protein L38| Length = 78 Score = 55.5 bits (132), Expect = 6e-08 Identities = 34/78 (43%), Positives = 42/78 (53%), Gaps = 9/78 (11%) Frame = -2 Query: 423 MPKQIHEIKDFLLTARRKDARSVRIKRTKDA---------VKFKVRCSRYLYTLCVFDAD 271 M ++I +IK FL RR D ++ +K K KFKVR S LYTL + DA Sbjct: 1 MAREITDIKQFLELTRRADVKTATVKINKKLNKAGKPFRQTKFKVRGSSSLYTLVINDAG 60 Query: 270 KANKLKQSLPPGLSVQEV 217 KA KL QSLPP L V + Sbjct: 61 KAKKLIQSLPPTLKVNRL 78
>RL38_AERPE (Q9YFR9) 50S ribosomal protein L38E| Length = 67 Score = 41.2 bits (95), Expect = 0.001 Identities = 24/58 (41%), Positives = 31/58 (53%) Frame = -2 Query: 423 MPKQIHEIKDFLLTARRKDARSVRIKRTKDAVKFKVRCSRYLYTLCVFDADKANKLKQ 250 MP ++ +F+ R A R+KR KD VK K R RYLYTL V +A L+Q Sbjct: 1 MPVELKSFDEFVKVVER--AVECRVKRGKDVVKIKARTKRYLYTLKVPPEKEAEVLEQ 56
>IPNS_EMENI (P05326) Isopenicillin N synthetase (EC 1.21.3.1) (IPNS)| (Isopenicillin N synthase) Length = 331 Score = 31.2 bits (69), Expect = 1.2 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +1 Query: 283 DAERVEVPGAANLELDGVLGPLDPHRPRVLPARRQQEVLDLVDLLRHG 426 +AER +P NL D V+ P DP P + +E L D L++G Sbjct: 276 NAERQSLPFFVNLGYDSVIDPFDPREPN---GKSDREPLSYGDYLQNG 320
>TLR9_BOVIN (Q5I2M5) Toll-like receptor 9 precursor (CD289 antigen)| Length = 1029 Score = 29.6 bits (65), Expect = 3.5 Identities = 12/26 (46%), Positives = 19/26 (73%) Frame = -2 Query: 249 SLPPGLSVQEV*ASSQSMPFLVAGMF 172 SLPPG+ +Q++ SS S+ F++ G F Sbjct: 694 SLPPGIRLQKLDVSSNSIGFVIPGFF 719
>CSD2_ECOLI (P53513) Outer membrane usher protein cssD precursor (CS6 fimbria| usher protein) Length = 802 Score = 29.6 bits (65), Expect = 3.5 Identities = 13/51 (25%), Positives = 27/51 (52%) Frame = +3 Query: 45 HKNPHRFNHIAPNITFQSWNIKTLLNGGKQGEPANSY*RTMDRTFPLLEKA 197 +KN + + ++PNI + SW ++ L + + +T +R + LEK+ Sbjct: 172 NKNRYDYISVSPNINYFSWRLRNLFEFNQNNDE-----KTWERNYTYLEKS 217 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,986,224 Number of Sequences: 219361 Number of extensions: 1064175 Number of successful extensions: 2873 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 2806 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2870 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
