| Clone Name | rbaal2o20 |
|---|---|
| Clone Library Name | barley_pub |
>RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2| Length = 112 Score = 168 bits (425), Expect = 9e-42 Identities = 84/102 (82%), Positives = 92/102 (90%) Frame = -2 Query: 464 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRI 285 M Q K+GLFVG+NKGHVVT+REL PRP RKGK +KR +F+RNLI+EVAG APYEKRI Sbjct: 1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60 Query: 284 TELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 159 TELLKVGKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 102
>RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3| Length = 108 Score = 167 bits (422), Expect = 2e-41 Identities = 82/95 (86%), Positives = 91/95 (95%) Frame = -2 Query: 443 SGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVG 264 +GLFVG+NKGHVVTKRE PPRP++RKGK +KR +F+RNLI+EVAG APYEKRITELLKVG Sbjct: 4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63 Query: 263 KDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 159 KDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS Sbjct: 64 KDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 98
>RL36A_ARATH (O80929) 60S ribosomal protein L36-1| Length = 113 Score = 166 bits (421), Expect = 3e-41 Identities = 82/96 (85%), Positives = 90/96 (93%) Frame = -2 Query: 446 KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 267 K+GLFVG+NKGHVVT+REL PRP+ RKGK +KR +F+R LIREVAG APYEKRITELLKV Sbjct: 7 KTGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKV 66 Query: 266 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 159 GKDKRALKVAKRKLGTHKRAK+KREEMSSVLRKMRS Sbjct: 67 GKDKRALKVAKRKLGTHKRAKRKREEMSSVLRKMRS 102
>RL36_DAUCA (P52866) 60S ribosomal protein L36| Length = 106 Score = 138 bits (347), Expect(2) = 1e-35 Identities = 68/91 (74%), Positives = 77/91 (84%) Frame = -2 Query: 464 MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRI 285 MAP QP +GLFVG+NKGH+VTK+EL PRPSDRKGK +KR FVRNLIREVAGF PYEKRI Sbjct: 1 MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60 Query: 284 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 192 TELLKVGKDKRALKV + K+G H + K+ E Sbjct: 61 TELLKVGKDKRALKVRQEKVG-HSQESKEEE 90 Score = 31.2 bits (69), Expect(2) = 1e-35 Identities = 10/15 (66%), Positives = 11/15 (73%) Frame = -1 Query: 195 RGDVKCPQEDEVWWW 151 RGDV+C DE WWW Sbjct: 91 RGDVQCSPPDEGWWW 105
>RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36| Length = 101 Score = 125 bits (315), Expect = 5e-29 Identities = 63/91 (69%), Positives = 76/91 (83%) Frame = -2 Query: 431 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 252 VG+NKGH VTK+ PRPS RKG ++RV VR ++REVAG+APYE+R+ ELLKVGKDKR Sbjct: 6 VGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKR 65 Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKMRS 159 ALK+ KRKLGTH R KKKREEM+ VLRKM++ Sbjct: 66 ALKMCKRKLGTHMRGKKKREEMAGVLRKMQA 96
>RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A| Length = 99 Score = 118 bits (295), Expect = 1e-26 Identities = 57/93 (61%), Positives = 77/93 (82%) Frame = -2 Query: 440 GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGK 261 GL VG+NKG V+TKR+LP RPS RKG+ +KR FVR+++REVAGFAPYE+R+ EL++ + Sbjct: 4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQ 63 Query: 260 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 DKRA K+AK++LGT KRAK K EE++SV++ R Sbjct: 64 DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36| Length = 104 Score = 116 bits (290), Expect = 4e-26 Identities = 58/90 (64%), Positives = 70/90 (77%) Frame = -2 Query: 431 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 252 VG+NKGH VTK PR S R+G+ TK FVR++IREV GFAPYE+R ELLKV KDKR Sbjct: 8 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67 Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 ALK K+++GTH RAK+KREE+S+VL MR Sbjct: 68 ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97
>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36| Length = 104 Score = 116 bits (290), Expect = 4e-26 Identities = 58/90 (64%), Positives = 70/90 (77%) Frame = -2 Query: 431 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 252 VG+NKGH VTK PR S R+G+ TK FVR++IREV GFAPYE+R ELLKV KDKR Sbjct: 8 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67 Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 ALK K+++GTH RAK+KREE+S+VL MR Sbjct: 68 ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97
>RL36B_SCHPO (O94658) 60S ribosomal protein L36-B| Length = 99 Score = 116 bits (290), Expect = 4e-26 Identities = 56/93 (60%), Positives = 75/93 (80%) Frame = -2 Query: 440 GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGK 261 GL VG+NKG +TKR+LP RPS RKG +KR FVR+++REVAGFAPYE+R+ EL++ + Sbjct: 4 GLVVGLNKGKTLTKRQLPERPSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQ 63 Query: 260 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 DKRA K+AK++LGT KRAK K EE++SV++ R Sbjct: 64 DKRARKLAKKRLGTLKRAKGKIEELTSVIQSSR 96
>RL36_BOVIN (Q3T171) 60S ribosomal protein L36| Length = 104 Score = 115 bits (288), Expect = 7e-26 Identities = 58/90 (64%), Positives = 70/90 (77%) Frame = -2 Query: 431 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 252 VG+NKGH VTK PR S R+G+ TK FVR++IREV GFAPYE+R ELLKV KDKR Sbjct: 8 VGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKR 67 Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 ALK K+++GTH RAK+KREE+S+VL MR Sbjct: 68 ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97
>RL36_RAT (P39032) 60S ribosomal protein L36| Length = 104 Score = 114 bits (284), Expect = 2e-25 Identities = 57/90 (63%), Positives = 69/90 (76%) Frame = -2 Query: 431 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 252 VG+NKGH VTK PR S R+G+ TK FVR++IREV FAPYE+R ELLKV KDKR Sbjct: 8 VGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKR 67 Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 ALK K+++GTH RAK+KREE+S+VL MR Sbjct: 68 ALKFIKKRVGTHIRAKRKREELSNVLAAMR 97
>RL36_MOUSE (P47964) 60S ribosomal protein L36| Length = 104 Score = 107 bits (268), Expect = 1e-23 Identities = 54/89 (60%), Positives = 66/89 (74%) Frame = -2 Query: 431 VGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGKDKR 252 VG+NKGH VTK PR S R+ + T FVR++IREV GFAPYE+R ELLKV K KR Sbjct: 8 VGLNKGHKVTKNVSKPRHSRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKR 67 Query: 251 ALKVAKRKLGTHKRAKKKREEMSSVLRKM 165 ALK K+++GTH RAK+KREE+S+VL M Sbjct: 68 ALKFIKKRVGTHIRAKRKREELSNVLAAM 96
>RL36_CAEEL (P49181) 60S ribosomal protein L36| Length = 103 Score = 105 bits (263), Expect = 5e-23 Identities = 48/93 (51%), Positives = 67/93 (72%) Frame = -2 Query: 440 GLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKVGK 261 GL VG+NKGH T+ + R + KG +K+ VR L+RE+ GFAPYE+R+ E+L++ K Sbjct: 7 GLAVGLNKGHAATQLPVKQRQNRHKGVASKKTKIVRELVREITGFAPYERRVLEMLRISK 66 Query: 260 DKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 DKRALK KR++GTH+RAK KREE+ +V+ R Sbjct: 67 DKRALKFLKRRIGTHRRAKGKREELQNVIIAQR 99
>RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)| Length = 105 Score = 104 bits (259), Expect = 2e-22 Identities = 54/102 (52%), Positives = 72/102 (70%), Gaps = 1/102 (0%) Frame = -2 Query: 464 MAPSQP-KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKR 288 MA P K+GL VG+NKGH T R + PR S KG +KR FVR +++EVAG APYE+R Sbjct: 1 MAKEAPAKTGLAVGLNKGHKTTARVVKPRVSRTKGHLSKRTAFVREVVKEVAGLAPYERR 60 Query: 287 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 + ELL+ KDKRA K+AK++LGT RAK+K +E+ V+ + R Sbjct: 61 VIELLRNSKDKRARKLAKKRLGTFGRAKRKVDELQRVIAESR 102
>RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)| Length = 99 Score = 104 bits (259), Expect = 2e-22 Identities = 48/95 (50%), Positives = 72/95 (75%) Frame = -2 Query: 446 KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 267 KSG+ G+NKG T +E+ P+ S RKG ++R +FVR++++EVAG APYE+R+ EL++ Sbjct: 3 KSGIAAGVNKGRKTTAKEVAPKISYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRN 62 Query: 266 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 +KRA K+AK++LGTHKRA +K EEM+ V+ + R Sbjct: 63 AGEKRAKKLAKKRLGTHKRALRKVEEMTQVIAESR 97
>RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)| Length = 115 Score = 100 bits (248), Expect = 3e-21 Identities = 53/102 (51%), Positives = 68/102 (66%), Gaps = 10/102 (9%) Frame = -2 Query: 437 LFVGINKGHVVTKRELPPRPSDRKGKG----------TKRVLFVRNLIREVAGFAPYEKR 288 L +G+NKGH +K D+K KG T+ F+R+L+REV G APYEKR Sbjct: 7 LAIGLNKGHKTSKIRNVKYTGDKKVKGLRGSRLKNIQTRHTKFMRDLVREVVGHAPYEKR 66 Query: 287 ITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 ELLKV KDKRALK KR+LGTH RAK+KREE+S++L ++R Sbjct: 67 TMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNILTQLR 108
>RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)| Length = 99 Score = 92.0 bits (227), Expect = 8e-19 Identities = 43/95 (45%), Positives = 68/95 (71%) Frame = -2 Query: 446 KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 267 K+G+ +G+NKG VT+ P+ S +KG + R FVR+L+RE+AG +PYE+R+ +L++ Sbjct: 3 KTGIAIGLNKGKKVTQMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRN 62 Query: 266 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 +KRA KVAK++LG+ RAK K EEM++++ R Sbjct: 63 SGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97
>RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)| Length = 99 Score = 91.7 bits (226), Expect = 1e-18 Identities = 43/95 (45%), Positives = 67/95 (70%) Frame = -2 Query: 446 KSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVLFVRNLIREVAGFAPYEKRITELLKV 267 K+G+ +G+NKG VT P+ S +KG + R FVR+L+RE+AG +PYE+R+ +L++ Sbjct: 3 KTGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRN 62 Query: 266 GKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 +KRA KVAK++LG+ RAK K EEM++++ R Sbjct: 63 SGEKRARKVAKKRLGSFTRAKAKVEEMNNIIAASR 97
>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6| Length = 249 Score = 31.2 bits (69), Expect = 1.7 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = -2 Query: 305 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS 183 A Y K + + LK K+KR K+AKR+ + RA + + E S Sbjct: 207 AEYAKLLAKRLKEAKEKRQEKIAKRRRLSSLRASQSKSESS 247
>LICR_BACSU (P46321) Probable licABCH operon regulator [Includes: Putative| phosphotransferase enzyme IIB component (EC 2.7.1.69) (Putative PTS system EIIB component); Putative phosphotransferase enzyme IIA component (EC 2.7.1.-) (Putative PTS system EIIA Length = 641 Score = 30.0 bits (66), Expect = 3.8 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = -1 Query: 177 PQEDEVWWWCCCRQEEIDFACWRTLFISMLCLVFSDYAKFVXLWKL 40 PQ +W C ++ ID+ R F+ +LC+ + A ++KL Sbjct: 563 PQTKTTFWAVCTLKKPIDWESQRVQFVCLLCVEKENKADLQSMYKL 608
>YMS5_CAEEL (P34501) Hypothetical protein K03H1.5 precursor| Length = 1385 Score = 29.6 bits (65), Expect = 5.0 Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 4/55 (7%) Frame = -1 Query: 192 GDVKCPQEDEVW---WWCCCRQEEIDFAC-WRTLFISMLCLVFSDYAKFVXLWKL 40 GD++ + W WW CR +++A W T +S+ + F LW + Sbjct: 1217 GDIERVCRNGTWSPGWWAWCRDRNLEYALKWMTALLSIFGISLIFVIFFCILWNI 1271
>FBXW8_HUMAN (Q8N3Y1) F-box/WD-repeat protein 8 (F-box and WD-40 domain protein| 8) (F-box only protein 29) Length = 598 Score = 29.3 bits (64), Expect = 6.5 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 7/31 (22%) Frame = -1 Query: 171 EDEVWWWCCCRQEE-------IDFACWRTLF 100 EDEV W+ C+QE D++CW+ +F Sbjct: 151 EDEVLWYRLCQQEGHLPDSSISDYSCWKLIF 181
>5HT6R_PANTR (Q5IS65) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin| receptor 6) Length = 440 Score = 29.3 bits (64), Expect = 6.5 Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 8/81 (9%) Frame = +1 Query: 250 ARLSFPTLRSSVIRFS*GAKPATSLIKFLTNSTLLVPFPLRSD-----GRGGSSRLVTTW 414 A L+ P+LR+S G +P SL L +P P SD G GGSS L T Sbjct: 346 ASLASPSLRTSHS----GPRPGLSL-----QQVLPLPLPPDSDSDSDAGSGGSSGLRLTA 396 Query: 415 PLLMP---TKSPDLGCDGAMA 468 LL+P T+ P L A A Sbjct: 397 QLLLPGEATRDPPLPTRAAAA 417
>Y3654_MYCBO (P59985) Hypothetical protein Mb3654| Length = 431 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +1 Query: 385 GGSSRLVTTWPLLMPTKSPDLGCDGAMAGLLLTLRMDASLVP 510 G S+ LV +P+L+ S +LG G + L +TL LVP Sbjct: 248 GASAILVMGFPVLLKLTSNELGAQGGVVILAVTLTRAPLLVP 289
>Y3630_MYCTU (O06377) Hypothetical protein Rv3630/MT3732| Length = 431 Score = 28.9 bits (63), Expect = 8.5 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +1 Query: 385 GGSSRLVTTWPLLMPTKSPDLGCDGAMAGLLLTLRMDASLVP 510 G S+ LV +P+L+ S +LG G + L +TL LVP Sbjct: 248 GASAILVMGFPVLLKLTSNELGAQGGVVILAVTLTRAPLLVP 289
>Y1220_SULTO (Q972A7) Hypothetical protein ST1220| Length = 163 Score = 28.9 bits (63), Expect = 8.5 Identities = 17/40 (42%), Positives = 21/40 (52%) Frame = -2 Query: 281 ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 162 E +V K +K AKRK KRA KK++ S RK R Sbjct: 122 EFSEVKPKKEKIKKAKRKKKGAKRASKKQKAKSKSARKSR 161
>5HT6R_HUMAN (P50406) 5-hydroxytryptamine 6 receptor (5-HT-6) (Serotonin| receptor 6) Length = 440 Score = 28.9 bits (63), Expect = 8.5 Identities = 30/81 (37%), Positives = 37/81 (45%), Gaps = 8/81 (9%) Frame = +1 Query: 250 ARLSFPTLRSSVIRFS*GAKPATSLIKFLTNSTLLVPFPLRSD-----GRGGSSRLVTTW 414 A L+ P+LR+S G +P SL L +P P SD G GGSS L T Sbjct: 346 ASLASPSLRTSHS----GPRPGLSL-----QQVLPLPLPPDSDSDSDAGSGGSSGLRLTA 396 Query: 415 PLLMP---TKSPDLGCDGAMA 468 LL+P T+ P L A A Sbjct: 397 QLLLPGEATQDPPLPTRAAAA 417 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 68,059,714 Number of Sequences: 219361 Number of extensions: 1283164 Number of successful extensions: 3770 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3576 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3761 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3754426130 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)