ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3d18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104371.1| Zea mays PCO121406 mRNA sequence 283 3e-73
2gb|AY111082.1| Zea mays CL35819_1 mRNA sequence 188 2e-44
3ref|XM_550488.1| Oryza sativa (japonica cultivar-group), mRNA 174 2e-40
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
5dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic ... 174 2e-40
6dbj|AK104301.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
7dbj|AK099246.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
8dbj|AK074027.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
9dbj|AK061483.1| Oryza sativa (japonica cultivar-group) cDNA clon... 174 2e-40
10gb|AC183492.1| Brassica oleracea Contig G, complete sequence 56 1e-04
11emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4,... 54 6e-04
12emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 54 6e-04
13dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
14dbj|AK067019.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 6e-04
15gb|BT014424.1| Lycopersicon esculentum clone 133742F, mRNA sequence 50 0.009
16gb|AY105917.1| Zea mays PCO144852 mRNA sequence 44 0.56
17gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence 42 2.2
18gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome ... 42 2.2
19gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.2
20gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence 42 2.2
21emb|BX511037.9| Zebrafish DNA sequence from clone DKEY-66N24 in ... 42 2.2
22gb|DP000061.1| Monodelphis domestica target 117 genomic scaffold 42 2.2
23gb|AC096638.2| Homo sapiens chromosome 1 clone RP11-224O19, comp... 42 2.2
24gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genom... 42 2.2
25dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
26gb|AE009671.1| Brucella melitensis 16M chromosome II, section 33... 42 2.2
27ref|NM_204131.1| Gallus gallus LIM domain kinase 1 (LIMK1), mRNA 42 2.2
28gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome I... 42 2.2
29dbj|AK072451.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
30gb|AF466202.2| Zea mays putative pol protein gene, partial cds; ... 42 2.2
31emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II... 42 2.2
32dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 42 2.2
33dbj|AB073752.1| Gallus gallus limk1 mRNA for LIM kinase 1, compl... 42 2.2
34gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, comp... 40 8.7
35gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome... 40 8.7
36gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, com... 40 8.7
37gb|AE007283.1| Sinorhizobium meliloti 1021 plasmid pSymA section... 40 8.7
38ref|XM_382043.1| Gibberella zeae PH-1 chromosome 1 hypothetical ... 40 8.7
39gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 8.7
40ref|XM_649544.1| Entamoeba histolytica HM-1:IMSS protein kinase ... 40 8.7
41gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 8.7
42emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genom... 40 8.7
43emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in... 40 8.7
44emb|BX276104.14| Mouse DNA sequence from clone RP24-313E3 on chr... 40 8.7
45emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 ... 40 8.7
46dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 40 8.7
47gb|DQ337861.1| Uncultured bacterium clone Psedi_nirS-22 NirS (ni... 40 8.7
48gb|DQ337837.1| Uncultured bacterium clone P1m_nirS-08 NirS (nirS... 40 8.7
49emb|BX470138.7| Zebrafish DNA sequence from clone DKEY-245N4 in ... 40 8.7
50emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in... 40 8.7
51emb|CT573129.9| Zebrafish DNA sequence from clone CH73-266E21 in... 40 8.7
52emb|CR381551.19| Zebrafish DNA sequence from clone DKEY-203A12 i... 40 8.7
53emb|CR854847.7| Zebrafish DNA sequence from clone DKEY-266L9 in ... 40 8.7
54gb|AC004050.1|AC004050 Homo sapiens chromosome 4 clone B207D4 ma... 40 8.7
55gb|AC154192.3| Mus musculus BAC clone RP24-70F14 from chromosome... 40 8.7
56emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chr... 40 8.7 
>gb|AY104371.1| Zea mays PCO121406 mRNA sequence
          Length = 1266

 Score =  283 bits (143), Expect = 3e-73
 Identities = 213/235 (90%), Gaps = 1/235 (0%)
 Strand = Plus / Minus

                                                                       
Query: 296 ccggagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatct 355
           ||||||||||| || ||||||||||| | |||||||||||| |||||||| ||||| || 
Sbjct: 920 ccggagcccttgtgatgctcctcggcggccatcttctccttggtcatcgtcccgacgtcc 861

                                                                       
Query: 356 gtggcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagaca 415
           ||||||| |||||||||||||  |||||||||||| ||||||||||||| ||||||||||
Sbjct: 860 gtggcggtcttggcgaccttgttgaacgcgctggtgacccatgacgcgccggtgaagaca 801

                                                                       
Query: 416 tacctgttcttcatgatggcagaccccggcgttgctcaccgtctgctcggccgcagccag 475
           ||||||||||||||||||||||| ||||||  |||||||| |||||||||| ||||| ||
Sbjct: 800 tacctgttcttcatgatggcaga-cccggcactgctcaccttctgctcggcggcagcgag 742

                                                                  
Query: 476 cgctgacttggtcttgtcggagacctggaacttctggtccatctccttgaccttc 530
            || |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 741 tgcggacttggtcttgtcggagacctggaacttctggtccatctccttcaccttc 687
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>gb|AY111082.1| Zea mays CL35819_1 mRNA sequence
          Length = 588

 Score =  188 bits (95), Expect = 2e-44
 Identities = 168/191 (87%), Gaps = 1/191 (0%)
 Strand = Plus / Plus

                                                                       
Query: 300 agcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtgg 359
           |||||||||||||||||||||||| |||||||||||| ||||| || ||||| || ||||
Sbjct: 383 agcccttctgctgctcctcggccgccatcttctccttggtcattgtcccgacgtccgtgg 442

                                                                       
Query: 360 cggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatacc 419
           | |||||||||||||||  |||||||| ||| ||||| ||||||| ||||||||| ||||
Sbjct: 443 cagccttggcgaccttgttgaacgcgccggtgacccacgacgcgccggtgaagacgtacc 502

                                                                       
Query: 420 tgttcttcatgatggcagaccccggcgttgctcaccgtctgctcggccgcagccagcgct 479
           ||||||||||||||||||| ||||||  |||||||| |||||||||| || || | ||||
Sbjct: 503 tgttcttcatgatggcaga-cccggcactgctcaccttctgctcggcagcggcgaacgct 561

                      
Query: 480 gacttggtctt 490
           ||||| |||||
Sbjct: 562 gactttgtctt 572
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>ref|XM_550488.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1027

 Score =  174 bits (88), Expect = 2e-40
 Identities = 275/336 (81%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 299 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 358
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 864 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 805

                                                                       
Query: 359 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 418
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 804 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 745

                                                                       
Query: 419 ctgttcttcatgatggcagaccccggcgttgctcaccgtctgctcggccgcagccagcgc 478
           || ||||||||||| ||||| || |  || ||||||| |||| || || ||||| |  ||
Sbjct: 744 ctattcttcatgatagcagatccagcagt-gctcaccttctgttcagcagcagcgaatgc 686

                                                                       
Query: 479 tgacttggtcttgtcggagacctggaacttctggtccatctccttgaccttctcgttgac 538
            |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 685 agacttggtcttgtccgacacctggaacttctgatccatctccttgaccttctcgttcac 626

                                                                       
Query: 539 aacggtagtgcccaaggtgaatttctcgctgagcccgatcttcttgtcgatggaagccac 598
            | || ||| || |  ||||| |||||||| || || |||||| |||| ||||| |||||
Sbjct: 625 tatggaagtaccaatagtgaacttctcgctaagaccaatcttcctgtcaatggaggccac 566

                                               
Query: 599 cttggcggtagcagtagatgtgaagccatgcctctc 634
           |||||||  |||||| |||||||| |||||| ||||
Sbjct: 565 cttggcgccagcagtggatgtgaacccatgcttctc 530
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
              complete sequence
          Length = 30731886

 Score =  174 bits (88), Expect = 2e-40
 Identities = 275/336 (81%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                          
Query: 299    gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 358
              |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 700886 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 700827

                                                                          
Query: 359    gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 418
              || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 700826 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 700767

                                                                          
Query: 419    ctgttcttcatgatggcagaccccggcgttgctcaccgtctgctcggccgcagccagcgc 478
              || ||||||||||| ||||| || |  || ||||||| |||| || || ||||| |  ||
Sbjct: 700766 ctattcttcatgatagcagatccagcagt-gctcaccttctgttcagcagcagcgaatgc 700708

                                                                          
Query: 479    tgacttggtcttgtcggagacctggaacttctggtccatctccttgaccttctcgttgac 538
               |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 700707 agacttggtcttgtccgacacctggaacttctgatccatctccttgaccttctcgttcac 700648

                                                                          
Query: 539    aacggtagtgcccaaggtgaatttctcgctgagcccgatcttcttgtcgatggaagccac 598
               | || ||| || |  ||||| |||||||| || || |||||| |||| ||||| |||||
Sbjct: 700647 tatggaagtaccaatagtgaacttctcgctaagaccaatcttcctgtcaatggaggccac 700588

                                                  
Query: 599    cttggcggtagcagtagatgtgaagccatgcctctc 634
              |||||||  |||||| |||||||| |||||| ||||
Sbjct: 700587 cttggcgccagcagtggatgtgaacccatgcttctc 700552
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>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
              clone:P0029D06
          Length = 150120

 Score =  174 bits (88), Expect = 2e-40
 Identities = 275/336 (81%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                          
Query: 299    gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 358
              |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 107314 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 107255

                                                                          
Query: 359    gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 418
              || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 107254 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 107195

                                                                          
Query: 419    ctgttcttcatgatggcagaccccggcgttgctcaccgtctgctcggccgcagccagcgc 478
              || ||||||||||| ||||| || |  || ||||||| |||| || || ||||| |  ||
Sbjct: 107194 ctattcttcatgatagcagatccagcagt-gctcaccttctgttcagcagcagcgaatgc 107136

                                                                          
Query: 479    tgacttggtcttgtcggagacctggaacttctggtccatctccttgaccttctcgttgac 538
               |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 107135 agacttggtcttgtccgacacctggaacttctgatccatctccttgaccttctcgttcac 107076

                                                                          
Query: 539    aacggtagtgcccaaggtgaatttctcgctgagcccgatcttcttgtcgatggaagccac 598
               | || ||| || |  ||||| |||||||| || || |||||| |||| ||||| |||||
Sbjct: 107075 tatggaagtaccaatagtgaacttctcgctaagaccaatcttcctgtcaatggaggccac 107016

                                                  
Query: 599    cttggcggtagcagtagatgtgaagccatgcctctc 634
              |||||||  |||||| |||||||| |||||| ||||
Sbjct: 107015 cttggcgccagcagtggatgtgaacccatgcttctc 106980
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>dbj|AK104301.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-011-A08, full
           insert sequence
          Length = 1143

 Score =  174 bits (88), Expect = 2e-40
 Identities = 275/336 (81%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 299 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 358
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 864 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 805

                                                                       
Query: 359 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 418
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 804 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 745

                                                                       
Query: 419 ctgttcttcatgatggcagaccccggcgttgctcaccgtctgctcggccgcagccagcgc 478
           || ||||||||||| ||||| || |  || ||||||| |||| || || ||||| |  ||
Sbjct: 744 ctattcttcatgatagcagatccagcagt-gctcaccttctgttcagcagcagcgaatgc 686

                                                                       
Query: 479 tgacttggtcttgtcggagacctggaacttctggtccatctccttgaccttctcgttgac 538
            |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 685 agacttggtcttgtccgacacctggaacttctgatccatctccttgaccttctcgttcac 626

                                                                       
Query: 539 aacggtagtgcccaaggtgaatttctcgctgagcccgatcttcttgtcgatggaagccac 598
            | || ||| || |  ||||| |||||||| || || |||||| |||| ||||| |||||
Sbjct: 625 tatggaagtaccaatagtgaacttctcgctaagaccaatcttcctgtcaatggaggccac 566

                                               
Query: 599 cttggcggtagcagtagatgtgaagccatgcctctc 634
           |||||||  |||||| |||||||| |||||| ||||
Sbjct: 565 cttggcgccagcagtggatgtgaacccatgcttctc 530
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>dbj|AK099246.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116H22, full
           insert sequence
          Length = 1193

 Score =  174 bits (88), Expect = 2e-40
 Identities = 275/336 (81%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 299 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 358
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 867 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 808

                                                                       
Query: 359 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 418
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 807 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 748

                                                                       
Query: 419 ctgttcttcatgatggcagaccccggcgttgctcaccgtctgctcggccgcagccagcgc 478
           || ||||||||||| ||||| || |  || ||||||| |||| || || ||||| |  ||
Sbjct: 747 ctattcttcatgatagcagatccagcagt-gctcaccttctgttcagcagcagcgaatgc 689

                                                                       
Query: 479 tgacttggtcttgtcggagacctggaacttctggtccatctccttgaccttctcgttgac 538
            |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 688 agacttggtcttgtccgacacctggaacttctgatccatctccttgaccttctcgttcac 629

                                                                       
Query: 539 aacggtagtgcccaaggtgaatttctcgctgagcccgatcttcttgtcgatggaagccac 598
            | || ||| || |  ||||| |||||||| || || |||||| |||| ||||| |||||
Sbjct: 628 tatggaagtaccaatagtgaacttctcgctaagaccaatcttcctgtcaatggaggccac 569

                                               
Query: 599 cttggcggtagcagtagatgtgaagccatgcctctc 634
           |||||||  |||||| |||||||| |||||| ||||
Sbjct: 568 cttggcgccagcagtggatgtgaacccatgcttctc 533
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>dbj|AK074027.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033076C18, full
           insert sequence
          Length = 1026

 Score =  174 bits (88), Expect = 2e-40
 Identities = 275/336 (81%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 299 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 358
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 863 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 804

                                                                       
Query: 359 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 418
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 803 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 744

                                                                       
Query: 419 ctgttcttcatgatggcagaccccggcgttgctcaccgtctgctcggccgcagccagcgc 478
           || ||||||||||| ||||| || |  || ||||||| |||| || || ||||| |  ||
Sbjct: 743 ctattcttcatgatagcagatccagcagt-gctcaccttctgttcagcagcagcgaatgc 685

                                                                       
Query: 479 tgacttggtcttgtcggagacctggaacttctggtccatctccttgaccttctcgttgac 538
            |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 684 agacttggtcttgtccgacacctggaacttctgatccatctccttgaccttctcgttcac 625

                                                                       
Query: 539 aacggtagtgcccaaggtgaatttctcgctgagcccgatcttcttgtcgatggaagccac 598
            | || ||| || |  ||||| |||||||| || || |||||| |||| ||||| |||||
Sbjct: 624 tatggaagtaccaatagtgaacttctcgctaagaccaatcttcctgtcaatggaggccac 565

                                               
Query: 599 cttggcggtagcagtagatgtgaagccatgcctctc 634
           |||||||  |||||| |||||||| |||||| ||||
Sbjct: 564 cttggcgccagcagtggatgtgaacccatgcttctc 529
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>dbj|AK061483.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-H08, full
           insert sequence
          Length = 1147

 Score =  174 bits (88), Expect = 2e-40
 Identities = 275/336 (81%), Gaps = 1/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 299 gagcccttctgctgctcctcggccgacatcttctccttcgtcatcgtgccgacatctgtg 358
           |||||||| ||||| || || || | |||||||||||| ||||| || || ||||| |||
Sbjct: 868 gagcccttatgctggtcttcagctgccatcttctcctttgtcattgtaccaacatcagtg 809

                                                                       
Query: 359 gcggccttggcgaccttgccgaacgcgctggtcacccatgacgcgctggtgaagacatac 418
           || |||||||| || |||  ||| ||| |||| ||||| || || | |||||||||||||
Sbjct: 808 gcagccttggcaactttgttgaatgcgttggtgacccacgaagccccggtgaagacatac 749

                                                                       
Query: 419 ctgttcttcatgatggcagaccccggcgttgctcaccgtctgctcggccgcagccagcgc 478
           || ||||||||||| ||||| || |  || ||||||| |||| || || ||||| |  ||
Sbjct: 748 ctattcttcatgatagcagatccagcagt-gctcaccttctgttcagcagcagcgaatgc 690

                                                                       
Query: 479 tgacttggtcttgtcggagacctggaacttctggtccatctccttgaccttctcgttgac 538
            |||||||||||||| || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct: 689 agacttggtcttgtccgacacctggaacttctgatccatctccttgaccttctcgttcac 630

                                                                       
Query: 539 aacggtagtgcccaaggtgaatttctcgctgagcccgatcttcttgtcgatggaagccac 598
            | || ||| || |  ||||| |||||||| || || |||||| |||| ||||| |||||
Sbjct: 629 tatggaagtaccaatagtgaacttctcgctaagaccaatcttcctgtcaatggaggccac 570

                                               
Query: 599 cttggcggtagcagtagatgtgaagccatgcctctc 634
           |||||||  |||||| |||||||| |||||| ||||
Sbjct: 569 cttggcgccagcagtggatgtgaacccatgcttctc 534
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>gb|AC183492.1| Brassica oleracea Contig G, complete sequence
          Length = 236640

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 44/48 (91%), Gaps = 1/48 (2%)
 Strand = Plus / Plus

                                                             
Query: 416   tacctgttcttcatgatggcagaccccggcgttgctcaccgtctgctc 463
             ||||||||||||||||| || || |||| |||||||||||||||||||
Sbjct: 45161 tacctgttcttcatgatagccgagcccg-cgttgctcaccgtctgctc 45207
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>emb|AL731579.4|OSJN00225 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006A01,
             complete sequence
          Length = 143157

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 412   gacatacctgttcttcatgatggcaga 438
             |||||||||||||||||||||||||||
Sbjct: 60392 gacatacctgttcttcatgatggcaga 60418
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>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
              complete sequence
          Length = 179644

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 412    gacatacctgttcttcatgatggcaga 438
              |||||||||||||||||||||||||||
Sbjct: 157462 gacatacctgttcttcatgatggcaga 157488
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                           
Query: 412      gacatacctgttcttcatgatggcaga 438
                |||||||||||||||||||||||||||
Sbjct: 30020710 gacatacctgttcttcatgatggcaga 30020736
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>dbj|AK067019.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089A03, full
           insert sequence
          Length = 1318

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 412 gacatacctgttcttcatgatggcaga 438
           |||||||||||||||||||||||||||
Sbjct: 714 gacatacctgttcttcatgatggcaga 688
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>gb|BT014424.1| Lycopersicon esculentum clone 133742F, mRNA sequence
          Length = 1011

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 86/105 (81%), Gaps = 1/105 (0%)
 Strand = Plus / Minus

                                                                       
Query: 413 acatacctgttcttcatgatggcagaccccggcgttgctcaccgtctgctcggccgcagc 472
           ||||| ||||||||||||||||||||  || ||  |||| ||||||||||| || || ||
Sbjct: 648 acatatctgttcttcatgatggcaga-tccagcagtgctaaccgtctgctcagcagctgc 590

                                                        
Query: 473 cagcgctgacttggtcttgtcggagacctggaacttctggtccat 517
            || || || || ||||| || || || |||||||||||||||||
Sbjct: 589 aagagcagattttgtcttttcagaaacatggaacttctggtccat 545
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>gb|AY105917.1| Zea mays PCO144852 mRNA sequence
          Length = 478

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 413 acatacctgttcttcatgatggcaga 438
           |||||||||||||||||||| |||||
Sbjct: 223 acatacctgttcttcatgatagcaga 198



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                
Query: 471 gccagcgctgacttggtcttgtcggagacctggaacttctggtccatctcctt 523
           |||||||||||||| ||||| || ||||| ||| | ||||| ||||| |||||
Sbjct: 166 gccagcgctgactttgtcttctcagagacttggtatttctgatccatttcctt 114
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>gb|AE014292.2| Brucella suis 1330 chromosome II, complete sequence
          Length = 1207381

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 358    ggcggccttggcgaccttgcc 378
              |||||||||||||||||||||
Sbjct: 952416 ggcggccttggcgaccttgcc 952436
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>gb|AC129330.4| Mus musculus BAC clone RP23-61B8 from chromosome 8, complete sequence
          Length = 218698

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 117    cttctacaaagagaaacaaaa 137
              |||||||||||||||||||||
Sbjct: 181908 cttctacaaagagaaacaaaa 181888
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 190      atatatctaaagttgttttct 210
                |||||||||||||||||||||
Sbjct: 30304582 atatatctaaagttgttttct 30304562
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>gb|AC091751.2| Gallus gallus clone WAG-71G10, complete sequence
          Length = 120464

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 323   gacatcttctccttcgtcatcgtgc 347
             |||||||||||||||| ||||||||
Sbjct: 50751 gacatcttctccttcggcatcgtgc 50727
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>emb|BX511037.9| Zebrafish DNA sequence from clone DKEY-66N24 in linkage group 1,
             complete sequence
          Length = 148544

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 121   tacaaagagaaacaaaatcct 141
             |||||||||||||||||||||
Sbjct: 75788 tacaaagagaaacaaaatcct 75768
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>gb|DP000061.1| Monodelphis domestica target 117 genomic scaffold
          Length = 360990

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 218    caataaataatacaacatggc 238
              |||||||||||||||||||||
Sbjct: 106868 caataaataatacaacatggc 106848
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>gb|AC096638.2| Homo sapiens chromosome 1 clone RP11-224O19, complete sequence
          Length = 185784

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 506   cttctggtccatctccttgaccttc 530
             |||||||||||||||||| ||||||
Sbjct: 34422 cttctggtccatctccttcaccttc 34446
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>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete
             sequence
          Length = 130359

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 190   atatatctaaagttgttttct 210
             |||||||||||||||||||||
Sbjct: 96262 atatatctaaagttgttttct 96242
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 190      atatatctaaagttgttttct 210
                |||||||||||||||||||||
Sbjct: 30396004 atatatctaaagttgttttct 30395984
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>gb|AE009671.1| Brucella melitensis 16M chromosome II, section 33 of 107 of the
            complete sequence
          Length = 14876

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 358  ggcggccttggcgaccttgcc 378
            |||||||||||||||||||||
Sbjct: 5349 ggcggccttggcgaccttgcc 5329
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>ref|NM_204131.1| Gallus gallus LIM domain kinase 1 (LIMK1), mRNA
          Length = 2796

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 323  gacatcttctccttcgtcatcgtgc 347
            |||||||||||||||| ||||||||
Sbjct: 1649 gacatcttctccttcggcatcgtgc 1673
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>gb|AE017224.1| Brucella abortus biovar 1 str. 9-941 chromosome II, complete sequence
          Length = 1162204

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 358    ggcggccttggcgaccttgcc 378
              |||||||||||||||||||||
Sbjct: 264777 ggcggccttggcgaccttgcc 264757
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>dbj|AK072451.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120I03, full
            insert sequence
          Length = 2829

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 190  atatatctaaagttgttttct 210
            |||||||||||||||||||||
Sbjct: 2302 atatatctaaagttgttttct 2322
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>gb|AF466202.2| Zea mays putative pol protein gene, partial cds; and putative gag-pol
             precursor -orf2, putative Fourf gag/pol protein, putative
             NADP-dependent malic enzyme, putative argonaute protein,
             putative pinhead protein, putative pol protein, putative
             gag protein, putative TNP2, r1-B73 proteins, putative
             genetic modifier, putative S-receptor kinase, putative
             aldose reductase-related protein, putative glutathione
             peroxidase, putative glycerol 3-phosphate permease,
             putative response regulator, and putative 4-coumarate-CoA
             ligase-like protein genes, complete cds
          Length = 290350

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 45/53 (84%)
 Strand = Plus / Plus

                                                                  
Query: 471   gccagcgctgacttggtcttgtcggagacctggaacttctggtccatctcctt 523
             |||||||||||||| ||||| || ||||| ||| | ||||| ||||| |||||
Sbjct: 99427 gccagcgctgactttgtcttctcagagacttggtatttctgatccatttcctt 99479
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>emb|AM040265.1| Brucella melitensis biovar Abortus chromosome II, complete sequence,
              strain 2308
          Length = 1156948

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 358    ggcggccttggcgaccttgcc 378
              |||||||||||||||||||||
Sbjct: 264846 ggcggccttggcgaccttgcc 264826
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>dbj|AP002091.2| Homo sapiens genomic DNA, chromosome 6q25.2, clone: CITD-2058I12,
             complete sequence
          Length = 106763

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 184   tgttctatatatctaaagttgtttt 208
             |||||||||||||| ||||||||||
Sbjct: 31206 tgttctatatatctgaagttgtttt 31230
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>dbj|AB073752.1| Gallus gallus limk1 mRNA for LIM kinase 1, complete cds
          Length = 2796

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 323  gacatcttctccttcgtcatcgtgc 347
            |||||||||||||||| ||||||||
Sbjct: 1649 gacatcttctccttcggcatcgtgc 1673
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>gb|AC119899.8| Mus musculus chromosome 5, clone RP24-235E5, complete sequence
          Length = 210751

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 75    attttgtaataacatgtaaaaccccaag 102
             ||||||| |||||||||||| |||||||
Sbjct: 73913 attttgtgataacatgtaaagccccaag 73940
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>gb|AC149224.7| Mus musculus BAC clone RP23-81D11 from chromosome 19, complete sequence
          Length = 217821

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 447    ttgctcaccgtctgctcggc 466
              ||||||||||||||||||||
Sbjct: 151946 ttgctcaccgtctgctcggc 151927
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>gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, complete sequence
          Length = 175566

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 447    ttgctcaccgtctgctcggc 466
              ||||||||||||||||||||
Sbjct: 167820 ttgctcaccgtctgctcggc 167839
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>gb|AE007283.1| Sinorhizobium meliloti 1021 plasmid pSymA section 89 of 121 of the
            complete plasmid sequence
          Length = 10765

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  tggcgatcagcggatgggcg 281
            ||||||||||||||||||||
Sbjct: 4163 tggcgatcagcggatgggcg 4182
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>ref|XM_382043.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG01867.1)
           partial mRNA
          Length = 1851

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 314 tcctcggccgacatcttctccttc 337
           |||||||||||| |||||||||||
Sbjct: 423 tcctcggccgacttcttctccttc 446
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 458    ctgctcggccgcagccagcg 477
              ||||||||||||||||||||
Sbjct: 739499 ctgctcggccgcagccagcg 739480
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>ref|XM_649544.1| Entamoeba histolytica HM-1:IMSS protein kinase (48.t00015)  partial
           mRNA
          Length = 1536

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 216 accaataaataatacaacat 235
           ||||||||||||||||||||
Sbjct: 255 accaataaataatacaacat 236
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   ctcggccgcagccagcgctg 480
             ||||||||||||||||||||
Sbjct: 31655 ctcggccgcagccagcgctg 31636
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>emb|BX572604.1| Rhodopseudomonas palustris CGA009 complete genome; segment 12/16
          Length = 348068

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 375    tgccgaacgcgctggtcacc 394
              ||||||||||||||||||||
Sbjct: 265269 tgccgaacgcgctggtcacc 265250
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>emb|CR392367.6| Zebrafish DNA sequence from clone CH211-144A4 in linkage group 24,
              complete sequence
          Length = 167553

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 118    ttctacaaagagaaacaaaa 137
              ||||||||||||||||||||
Sbjct: 158163 ttctacaaagagaaacaaaa 158144
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>emb|BX276104.14| Mouse DNA sequence from clone RP24-313E3 on chromosome 4, complete
             sequence
          Length = 152376

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   tccaccaataaataatacaa 232
             ||||||||||||||||||||
Sbjct: 41603 tccaccaataaataatacaa 41584
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>emb|BX571691.13| Zebrafish DNA sequence from clone CH211-142G20 in linkage group 7,
             complete sequence
          Length = 79440

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   tcggccgcagccagcgctga 481
             ||||||||||||||||||||
Sbjct: 49975 tcggccgcagccagcgctga 49956
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 357     tggcggccttggcgaccttg 376
               ||||||||||||||||||||
Sbjct: 2824116 tggcggccttggcgaccttg 2824097
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>gb|DQ337861.1| Uncultured bacterium clone Psedi_nirS-22 NirS (nirS) gene, partial
           cds
          Length = 410

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 374 ttgccgaacgcgctggtcacccat 397
           ||||||| ||||||||||||||||
Sbjct: 290 ttgccgagcgcgctggtcacccat 267
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>gb|DQ337837.1| Uncultured bacterium clone P1m_nirS-08 NirS (nirS) gene, partial
           cds
          Length = 410

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 374 ttgccgaacgcgctggtcacccat 397
           ||||||| ||||||||||||||||
Sbjct: 290 ttgccgagcgcgctggtcacccat 267
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>emb|BX470138.7| Zebrafish DNA sequence from clone DKEY-245N4 in linkage group 5,
             complete sequence
          Length = 117265

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 462   tcggccgcagccagcgctga 481
             ||||||||||||||||||||
Sbjct: 52883 tcggccgcagccagcgctga 52902
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>emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in linkage group 24,
              complete sequence
          Length = 208279

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 118    ttctacaaagagaaacaaaa 137
              ||||||||||||||||||||
Sbjct: 169736 ttctacaaagagaaacaaaa 169755
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>emb|CT573129.9| Zebrafish DNA sequence from clone CH73-266E21 in linkage group 13,
             complete sequence
          Length = 47008

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   tcggccgcagccagcgctga 481
             ||||||||||||||||||||
Sbjct: 23369 tcggccgcagccagcgctga 23350
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>emb|CR381551.19| Zebrafish DNA sequence from clone DKEY-203A12 in linkage group 14,
             complete sequence
          Length = 156476

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 462   tcggccgcagccagcgctga 481
             ||||||||||||||||||||
Sbjct: 91258 tcggccgcagccagcgctga 91239
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>emb|CR854847.7| Zebrafish DNA sequence from clone DKEY-266L9 in linkage group 11,
             complete sequence
          Length = 48855

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   tatatatctaaagttgtttt 208
             ||||||||||||||||||||
Sbjct: 39021 tatatatctaaagttgtttt 39002
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>gb|AC004050.1|AC004050 Homo sapiens chromosome 4 clone B207D4 map 4q25, complete sequence
          Length = 127098

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 72    accattttgtaataacatgt 91
             ||||||||||||||||||||
Sbjct: 16849 accattttgtaataacatgt 16830
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>gb|AC154192.3| Mus musculus BAC clone RP24-70F14 from chromosome 17, complete sequence
          Length = 234088

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   aaagagaaacaaaatcctgg 143
             ||||||||||||||||||||
Sbjct: 77675 aaagagaaacaaaatcctgg 77656
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>emb|CT025551.9| Mouse DNA sequence from clone RP23-414I10 on chromosome 13, complete
              sequence
          Length = 196737

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 126    agagaaacaaaatcctgggt 145
              ||||||||||||||||||||
Sbjct: 191580 agagaaacaaaatcctgggt 191561


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,095,327
Number of Sequences: 3902068
Number of extensions: 6095327
Number of successful extensions: 130200
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129697
Number of HSP's gapped (non-prelim): 486
length of query: 640
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 617
effective length of database: 17,143,297,704
effective search space: 10577414683368
effective search space used: 10577414683368
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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