ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2o17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alterna... 28 7.3
2Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92) 28 9.6

>LDB3_HUMAN (O75112) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher)
          Length = 727

 Score = 28.1 bits (61), Expect = 7.3
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = -1

Query: 93  PVPTYDPSPTPTSCFSPRCHAEKIAPSVYFA 1
           PVPTY PSP P    SP  +    APSV ++
Sbjct: 449 PVPTYTPSPAPAYTPSPAPNYNP-APSVAYS 478



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>Y091_NPVOP (O10341) Hypothetical 29.3 kDa protein (ORF92)|
          Length = 279

 Score = 27.7 bits (60), Expect = 9.6
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 93  PVPTYDPSPTPTSCFSP 43
           P PT  PSPTPT   SP
Sbjct: 63  PTPTPTPSPTPTPALSP 79


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,912,575
Number of Sequences: 219361
Number of extensions: 124176
Number of successful extensions: 891
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 80,573,946
effective HSP length: 6
effective length of database: 79,257,780
effective search space used: 1902186720
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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