ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal3d16 |
|---|---|
| Clone Library Name | barley_pub |
>YJBH_ECOLI (P32689) Hypothetical lipoprotein yjbH precursor| Length = 698 Score = 35.8 bits (81), Expect = 0.095 Identities = 27/103 (26%), Positives = 46/103 (44%), Gaps = 7/103 (6%) Frame = +2 Query: 284 RYCHHDASYQETGAAD---CRHSPNLIKLLFSPL*FNGETSQQDKQPPTIYCETKKGHSG 454 +YC+ D SY++ G+ D H P + F G Q QP + E + G Sbjct: 177 KYCYRDNSYKQAGSIDGSQMFHGPASL--------FGGVEYQTPWQPLRLKLE----YEG 224 Query: 455 DRYDEDFADQLNQR----IVVYSKVHPNTDLNCIYDTINGYVY 571 + Y +DFA +L Q+ + +V D+N Y+ N +++ Sbjct: 225 NNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMF 267
>THAA_PAROL (Q91241) Thyroid hormone receptor alpha A (THR-alpha-A)| Length = 416 Score = 32.7 bits (73), Expect = 0.81 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +3 Query: 6 DAFGKQCQNRIRSHQTCKILSTSKFIHYSKHNIIH 110 D G QC +I Q +L+ +I+Y KHNI H Sbjct: 334 DRSGHQCMEKIEQCQEAYLLAFEHYINYRKHNIPH 368
>RXFP1_HUMAN (Q9HBX9) Relaxin receptor 1 (Relaxin family peptide receptor 1)| (Leucine-rich repeat-containing G-protein coupled receptor 7) Length = 757 Score = 32.3 bits (72), Expect = 1.1 Identities = 22/76 (28%), Positives = 38/76 (50%) Frame = -1 Query: 502 DNPLVELVSKIFIVSVSAVALLGFAVYGGRLFVLLRRFPIESKGRKKKLYEVGTVTTICC 323 +N L ++ ++F+ VSAV G +FV+ R I S + KLY + ++ ++CC Sbjct: 400 ENLLASIIQRVFVWVVSAVTCF------GNIFVICMRPYIRS---ENKLYAM-SIISLCC 449 Query: 322 TCFLIRCIVVAISAFD 275 L+ + I FD Sbjct: 450 ADCLMGIYLFVIGGFD 465
>ZN540_HUMAN (Q8NDQ6) Zinc finger protein 540| Length = 660 Score = 31.6 bits (70), Expect = 1.8 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 3/47 (6%) Frame = +3 Query: 6 DAFGKQCQNRIRSHQTCKILSTSKFIH---YSKHNIIHKHKDL*LMG 137 D G+QC + H+T K LS+ K IH SK +II K K L L G Sbjct: 70 DVTGRQCPGLLSRHKT-KKLSSEKDIHEISLSKESIIEKSKTLRLKG 115
>CASC5_MOUSE (Q66JQ7) Protein CASC5 (Cancer susceptibility candidate gene 5| protein homolog) Length = 1612 Score = 30.8 bits (68), Expect = 3.1 Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Frame = +1 Query: 220 YNRRNLELDDPKPPKKHQHQMQILPPRCILSGNRCSRLSSQ--SQPHKASFFAPLIQWGN 393 Y+ N E D+ + P + QH + PPR L +C ++Q + P K + Sbjct: 5 YSEANEENDNTQRPVRRQHSSILKPPRSPLQDLKCGNQTNQEPNPPRKRKSSRRVSFADT 64 Query: 394 VSARQTASH 420 + QT SH Sbjct: 65 IKVFQTESH 73
>PAO_MAIZE (O64411) Polyamine oxidase precursor (EC 1.5.3.11)| Length = 500 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/68 (30%), Positives = 31/68 (45%) Frame = -1 Query: 556 NSIVYAIQVCIWVYLGINDNPLVELVSKIFIVSVSAVALLGFAVYGGRLFVLLRRFPIES 377 NS+ A V + LG+ + L++ K+ V A+ AVY R+F E Sbjct: 282 NSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFDMAVYTKIFLKFPRKFWPEG 341 Query: 376 KGRKKKLY 353 KGR+ LY Sbjct: 342 KGREFFLY 349
>EMSY_BRARE (Q7ZUV7) Protein EMSY| Length = 1173 Score = 30.4 bits (67), Expect = 4.0 Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 12/81 (14%) Frame = +3 Query: 306 LIRKQVQQIVVTVPTS*SFFFRPFDSMGKRLSK-----TNSLPPYTA-------KPRRAT 449 ++ K+V ++ VT P + S G ++S NSLPP+ + KP T Sbjct: 216 VLLKEVPKVAVTAPGPKTITLPV--SGGPKISNLMQSIANSLPPHMSPVKITFTKPSTQT 273 Query: 450 AETDTMKILLTSSTNGLSFIP 512 T T K+++ +++ +F+P Sbjct: 274 TNTTTQKVIIVTTSPSSNFVP 294
>THAB_PAROL (Q91242) Thyroid hormone receptor alpha B (THR-alpha-B)| Length = 391 Score = 30.0 bits (66), Expect = 5.2 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 6 DAFGKQCQNRIRSHQTCKILSTSKFIHYSKHNIIH 110 D G C ++I Q +L+ +I+Y KHNI H Sbjct: 309 DRSGLTCMDKIEKCQETYLLAFEHYINYRKHNIPH 343
>NORM_BACHD (Q9KEJ2) Probable multidrug resistance protein norM| (Multidrug-efflux transporter) Length = 458 Score = 29.6 bits (65), Expect = 6.8 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 7/126 (5%) Frame = -1 Query: 571 IYVAVNSIVYAIQVCIWVYLGI---NDNPLVELVSKIFIVSVS-AVALLGFAVYGGRLFV 404 ++ +N ++ A+ I +G +D P V L +++S AV L+G V L Sbjct: 60 VFTGLNGVLLALTPIIAQSIGAEKRDDVPYVFLQGLYLSIAISIAVILIGAVV----LDP 115 Query: 403 LLRRFPIESK-GRKKKLYEVGTVTTICCTCFL--IRCIVVAISAFDADVSLEVLDHPILD 233 +L +E + GR K Y +G I IRC++ ++ + + +L PI Sbjct: 116 ILSAMSLEDEVGRIAKEYLIGLAFGIVPLFIYTTIRCLIDSLGETRVTMFITLLSLPINI 175 Query: 232 FFYYML 215 FF Y+L Sbjct: 176 FFNYVL 181
>ARP3_DROME (P32392) Actin-like protein 3 (Actin-related protein 3) (Actin-like| protein 66B) (Actin-2) Length = 418 Score = 29.3 bits (64), Expect = 8.9 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = +2 Query: 290 CHHDASYQETGAADCRHSP 346 CH A+Y+E G + CRH+P Sbjct: 394 CHTKAAYEEYGPSICRHNP 412
>EMSY_MOUSE (Q8BMB0) Protein EMSY| Length = 1264 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 7/45 (15%) Frame = +3 Query: 399 SKTNSLPPYTA-------KPRRATAETDTMKILLTSSTNGLSFIP 512 S NSLPP+ + KP T T T K+++ +++ +F+P Sbjct: 211 SIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVP 255
>ERBA_AVIER (P03373) Transforming protein erbA (Oncogene erbA)| Length = 385 Score = 29.3 bits (64), Expect = 8.9 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%) Frame = +3 Query: 6 DAFGKQCQNRIRSHQTCKILSTSKFIHYSKHNIIH-------KHKDL*LMG*YCA 149 D G C ++I Q +L+ +I+Y KHNI H K DL ++G Y A Sbjct: 312 DRTGLICVDKIEKCQESYLLAFEHYINYRKHNIPHFWSKLLMKVADLRMIGAYHA 366
>THB2_MOUSE (P37244) Thyroid hormone receptor beta-2| Length = 475 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 6 DAFGKQCQNRIRSHQTCKILSTSKFIHYSKHNIIH 110 D G C RI +Q +L+ +I+Y KH++ H Sbjct: 396 DRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 430
>RBGPR_RAT (Q5U1Z0) Rab3 GTPase-activating protein non-catalytic subunit (Rab3| GTPase-activating protein 150 kDa subunit) (Rab3-GAP p150) (Rab3-GAP regulatory subunit) (RAB3-GAP150) Length = 1386 Score = 29.3 bits (64), Expect = 8.9 Identities = 17/64 (26%), Positives = 33/64 (51%) Frame = -1 Query: 322 TCFLIRCIVVAISAFDADVSLEVLDHPILDFFYYMLTEILPSALVLFILRKLPPKRATAQ 143 T FL C+ + ++ +AD+S + + P+LD L+ P+++V L + P + Sbjct: 1095 TSFLGSCLDLLQTSLEADISRDEVQVPVLDTEDAWLSVEGPTSIVELALEQKPIHYPLVE 1154 Query: 142 YHPI 131 +H I Sbjct: 1155 HHSI 1158
>EMSY_HUMAN (Q7Z589) Protein EMSY| Length = 1322 Score = 29.3 bits (64), Expect = 8.9 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 7/45 (15%) Frame = +3 Query: 399 SKTNSLPPYTA-------KPRRATAETDTMKILLTSSTNGLSFIP 512 S NSLPP+ + KP T T T K+++ +++ +F+P Sbjct: 247 SIANSLPPHMSPVKITFTKPSTQTTNTTTQKVIIVTTSPSSTFVP 291
>THB1_RAT (P18113) Thyroid hormone receptor beta-1| Length = 461 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 6 DAFGKQCQNRIRSHQTCKILSTSKFIHYSKHNIIH 110 D G C RI +Q +L+ +I+Y KH++ H Sbjct: 382 DRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 416
>THB1_MOUSE (P37242) Thyroid hormone receptor beta-1| Length = 461 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 6 DAFGKQCQNRIRSHQTCKILSTSKFIHYSKHNIIH 110 D G C RI +Q +L+ +I+Y KH++ H Sbjct: 382 DRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 416
>THB1_HUMAN (P10828) Thyroid hormone receptor beta-1| Length = 461 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 6 DAFGKQCQNRIRSHQTCKILSTSKFIHYSKHNIIH 110 D G C RI +Q +L+ +I+Y KH++ H Sbjct: 382 DRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 416
>THB2_RAT (P37826) Thyroid hormone receptor beta-2| Length = 514 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 6 DAFGKQCQNRIRSHQTCKILSTSKFIHYSKHNIIH 110 D G C RI +Q +L+ +I+Y KH++ H Sbjct: 435 DRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 469
>THB2_HUMAN (P37243) Thyroid hormone receptor beta-2| Length = 476 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/35 (34%), Positives = 19/35 (54%) Frame = +3 Query: 6 DAFGKQCQNRIRSHQTCKILSTSKFIHYSKHNIIH 110 D G C RI +Q +L+ +I+Y KH++ H Sbjct: 397 DRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTH 431 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,742,928 Number of Sequences: 219361 Number of extensions: 1656835 Number of successful extensions: 4569 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4440 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4568 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
