>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  188 bits (95), Expect = 2e-45
 Identities = 105/107 (98%), Gaps = 1/107 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    atgataagtaggtgtattggtctttgccaa-tgggtatactcaatatatttagagatata 59
            |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 7781 atgataagtaggtgtattggtctttgccaaatgggtatacacaatatatttagagatata 7722

                                                           
Query: 60   ttaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagg 106
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7721 ttaacaaaacatgcccagcaatcgcttggatgcgatgcggacttagg 7675

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  147 bits (74), Expect = 7e-33
 Identities = 77/78 (98%)
 Strand = Plus / Minus

                                                                        
Query: 29   aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 88
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                              
Query: 89   atgcgatgcggacttagg 106
            ||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttagg 1315

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  131 bits (66), Expect = 4e-28
 Identities = 76/78 (97%), Gaps = 1/78 (1%)
 Strand = Plus / Minus

                                                                        
Query: 29   aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 87
            ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643

                              
Query: 88   gatgcgatgcggacttag 105
            ||||||||||||||||||
Sbjct: 1642 gatgcgatgcggacttag 1625

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score = 93.7 bits (47), Expect = 9e-17
 Identities = 88/100 (88%), Gaps = 5/100 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgataagtaggtgtattggtctttgccaa-tgggtatactcaatatatttagagatata 59
           |||||||||||   |||| |||||| |||| | |||||||||||||| ||||    ||||
Sbjct: 797 atgataagtagtcctatttgtctttaccaaataggtatactcaatatcttta----tata 742

                                                   
Query: 60  ttaacaaaacatgcccagcaatcgcttggatgcgatgcgg 99
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaacaaaacatgcccagcaatcgcttggatgcgatgcgg 702

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score = 89.7 bits (45), Expect = 1e-15
 Identities = 45/45 (100%)
 Strand = Plus / Minus

                                                         
Query: 55   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg 99
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg 1552

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score = 46.1 bits (23), Expect = 0.020
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                           
Query: 69   catgcccagcaatcgcttggatgcgatgcgg 99
            ||||||||||| ||||||| |||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcgg 1563

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.078
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 42    aatatatttagagatatattaa 63
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 44    tatatttagagatatattaac 64
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 44    tatatttagagatatattaac 64
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 0.31
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 44   tatatttagagatatattaac 64
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

>gb|AC166748.3| Mus musculus chromosome 19, clone RP23-345M21, complete sequence
          Length = 178257

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      atgataagtaggtgtattgg 20
              ||||||||||||||||||||
Sbjct: 109371 atgataagtaggtgtattgg 109390

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 72   gcccagcaatcgcttggatgcgatgcgg 99
            |||||||| ||||||| |||||||||||
Sbjct: 1552 gcccagcagtcgcttgtatgcgatgcgg 1525

>ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (hsp70) partial mRNA
          Length = 3732

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 19   ggtctttgccaatgggtata 38
            ||||||||||||||||||||
Sbjct: 2247 ggtctttgccaatgggtata 2266

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 42    aatatatttagagatatatt 61
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473

>gb|AC152426.10| Mus musculus chromosome 19, clone RP23-216E17, complete sequence
          Length = 217738

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      atgataagtaggtgtattgg 20
              ||||||||||||||||||||
Sbjct: 149521 atgataagtaggtgtattgg 149502

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 66    aaacatgcccagcaatcgcttgga 89
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

>gb|AC117829.7| Mus musculus chromosome 19, clone RP24-95D15, complete sequence
          Length = 168084

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      atgataagtaggtgtattgg 20
              ||||||||||||||||||||
Sbjct: 131096 atgataagtaggtgtattgg 131077

>dbj|AK040781.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
            enriched library, clone:A530024M06 product:Hypothetical
            protein FLJ33092 (UST1r) homolog [Homo sapiens], full
            insert sequence
          Length = 2605

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 1    atgataagtaggtgtattgg 20
            ||||||||||||||||||||
Sbjct: 2350 atgataagtaggtgtattgg 2331

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 1.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    aatatatttagagatatatt 61
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485

>emb|CR382386.8| Zebrafish DNA sequence from clone DKEY-111O10 in linkage group 14,
              complete sequence
          Length = 162528

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 42     aatatatttagagatatat 60
              |||||||||||||||||||
Sbjct: 126665 aatatatttagagatatat 126647

>gb|AE014817.1| Plasmodium falciparum 3D7 chromosome 14 section 2 of 13 of the complete
             sequence
          Length = 254449

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 43    atatatttagagatatattaaca 65
             |||||||| ||||||||||||||
Sbjct: 88941 atatatttcgagatatattaaca 88963

>gb|AE014830.1| Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete
             sequence
          Length = 250029

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 46    tatttagagatatattaacaaaa 68
             ||||||||||| |||||||||||
Sbjct: 36880 tatttagagatttattaacaaaa 36858

>gb|AC090154.19| Homo sapiens chromosome 8, clone RP11-705C3, complete sequence
          Length = 144615

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 4     ataagtaggtgtattggtctttg 26
             ||||||||||||||| |||||||
Sbjct: 41047 ataagtaggtgtattagtctttg 41025

>emb|AL137011.9| Human DNA sequence from clone RP4-662A9 on chromosome 6 Contains part
             of a novel gene and a novel gene, complete sequence
          Length = 109088

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 31    tgggtatactcaatatatt 49
             |||||||||||||||||||
Sbjct: 39042 tgggtatactcaatatatt 39024

>emb|BX942833.8| Zebrafish DNA sequence from clone DKEY-177F17 in linkage group 20
            Contains part of the gene for a novel protein similar to
            rat kinase D-interacting substance of 220 kDa
            (RGD:619949), complete sequence
          Length = 42729

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 56   tatattaacaaaacatgcc 74
            |||||||||||||||||||
Sbjct: 9802 tatattaacaaaacatgcc 9820

>gb|AC104831.3| Homo sapiens 3 BAC RP11-451G4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 115000

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 42    aatatatttagagatatattaacaaaa 68
             |||||||||||||| ||||| ||||||
Sbjct: 26766 aatatatttagagaaatatttacaaaa 26792

>gb|AC093742.3| Homo sapiens BAC clone RP11-24M8 from 4, complete sequence
          Length = 114455

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 43     atatatttagagatatattaaca 65
              ||||||||||| |||||||||||
Sbjct: 102503 atatatttagatatatattaaca 102481

>emb|BX663611.13| Zebrafish DNA sequence from clone DKEY-148N20 in linkage group 14,
             complete sequence
          Length = 213131

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 42    aatatatttagagatatat 60
             |||||||||||||||||||
Sbjct: 75565 aatatatttagagatatat 75583

>gb|AC025782.7|AC025782 Arabidopsis thaliana chromosome 1 BAC T15P17 genomic sequence, complete
             sequence
          Length = 97899

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 46    tatttagagatatattaacaaaa 68
             |||||||| ||||||||||||||
Sbjct: 76433 tatttagaaatatattaacaaaa 76411

>gb|AC161282.5| Pan troglodytes BAC clone CH251-381O9 from chromosome unknown, complete
             sequence
          Length = 172427

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 40    tcaatatatttagagatat 58
             |||||||||||||||||||
Sbjct: 55217 tcaatatatttagagatat 55199

>emb|BX001022.9| Zebrafish DNA sequence from clone CH211-243O19, complete sequence
          Length = 160804

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 42     aatatatttagagatatat 60
              |||||||||||||||||||
Sbjct: 108768 aatatatttagagatatat 108750

>emb|BX548013.3| Mouse DNA sequence from clone RP23-452C18 on chromosome X, complete
             sequence
          Length = 14756

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 42    aatatatttagagatatat 60
             |||||||||||||||||||
Sbjct: 10252 aatatatttagagatatat 10234

>emb|AL162759.4|CNS01RHZ Human chromosome 14 DNA sequence BAC R-785G15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 174273

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 40     tcaatatatttagagatat 58
              |||||||||||||||||||
Sbjct: 132817 tcaatatatttagagatat 132799

>emb|AL929336.12| Zebrafish DNA sequence from clone CH211-163J21, complete sequence
          Length = 156284

 Score = 38.2 bits (19), Expect = 4.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 42    aatatatttagagatatat 60
             |||||||||||||||||||
Sbjct: 39904 aatatatttagagatatat 39886


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 887,509
Number of Sequences: 3902068
Number of extensions: 887509
Number of successful extensions: 70394
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70316
Number of HSP's gapped (non-prelim): 75
length of query: 107
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 86
effective length of database: 17,151,101,840
effective search space: 1474994758240
effective search space used: 1474994758240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)