ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2n21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VGLG_HHV2H (P13290) Glycoprotein G 32 1.9
2IL6RB_RAT (P40190) Interleukin-6 receptor beta chain precursor (... 32 1.9
3ZN490_HUMAN (Q9ULM2) Zinc finger protein 490 31 2.5
4MNT_MOUSE (O08789) Max-binding protein MNT (Protein ROX) (Myc an... 30 4.3
5MSH5_RAT (Q6MG62) MutS protein homolog 5 30 5.7
6OR7A5_HUMAN (Q15622) Olfactory receptor 7A5 (Olfactory receptor ... 29 9.7
7OST4_HUMAN (Q9Y661) Heparan sulfate glucosamine 3-O-sulfotransfe... 29 9.7

>VGLG_HHV2H (P13290) Glycoprotein G|
          Length = 699

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 31/104 (29%), Positives = 33/104 (31%), Gaps = 13/104 (12%)
 Frame = +2

Query: 299 PPACRTEPHPRPATPRLM------CVPSPVEVEAMSCG----AALPPVHYPGKGQWXXXX 448
           PP   T   PRP TP           P PV   A         A PP   PG        
Sbjct: 456 PPPTSTHATPRPTTPGPQTTPPGPATPGPVGASAAPTADSPLTASPPATAPGP----SAA 511

Query: 449 XXXXXXXXXXXGTRGTARW--RSP*QY-HHQVDPSPTAPRMLPP 571
                      GTRGTAR     P  + H   D  P +P   PP
Sbjct: 512 NVSVAATTATPGTRGTARTPPTDPKTHPHGPADAPPGSPAPPPP 555



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>IL6RB_RAT (P40190) Interleukin-6 receptor beta chain precursor (IL-6R-beta)|
           (Interleukin 6 signal transducer) (Membrane glycoprotein
           130) (gp130) (CD130 antigen)
          Length = 918

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
 Frame = +1

Query: 103 DTIILVH-----QESPETSMEFTMYAKRGATTSVHRAMSPFMCGFILTTLMSGLWCGRSR 267
           DT+ +VH     +E  +   EFT    + A   +   + P    F+LTTL+  L+C   R
Sbjct: 584 DTLYMVHMAAYTEEGGKDGPEFTFTTLKFAQGEIEAIVVPVCLAFLLTTLLGVLFCFNKR 643



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>ZN490_HUMAN (Q9ULM2) Zinc finger protein 490|
          Length = 529

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +3

Query: 540 HHQQRPECCHHYDLKLHRCPDC 605
           H +Q+P  CH Y  K H+C +C
Sbjct: 178 HTEQKPNECHEYGEKPHKCKEC 199



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>MNT_MOUSE (O08789) Max-binding protein MNT (Protein ROX) (Myc antagonist MNT)|
          Length = 591

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +2

Query: 296 QPPACRTE---PHPRPATPRLMCVPSPVEVEAMSCGAALPPVH 415
           QPP  +T    P P PATP    VP+PV + A + G +    H
Sbjct: 404 QPPQQKTPLPGPPPPPATPTQTLVPAPVHLVATAGGGSTVIAH 446



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>MSH5_RAT (Q6MG62) MutS protein homolog 5|
          Length = 831

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/62 (30%), Positives = 26/62 (41%)
 Frame = -3

Query: 260 RPHHSPLISVVKMKPHMKGLIALCTLVVAPLFAYMVNSMDVSGLSWCTRIMVSCGVSGAL 81
           RPH+SP I  V++K     L+ LC     P      NS D  G     +++     SG  
Sbjct: 543 RPHYSPCIQGVRIKNGRHPLMELCARTFVP------NSTDCGGDQGRVKVITGPNSSGKS 596

Query: 80  TY 75
            Y
Sbjct: 597 IY 598



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>OR7A5_HUMAN (Q15622) Olfactory receptor 7A5 (Olfactory receptor TPCR92)|
          Length = 319

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = -3

Query: 245 PLISVVKMKPHMKGLIALCTLVVAPLFAYMVNSMDVSGLSWCTRIMV 105
           PL  +V M PH+ GL+ L +  ++ L++ ++  + V  LS+CT + +
Sbjct: 129 PLHYMVIMNPHLCGLLVLASWTMSALYS-LLQILMVVRLSFCTALEI 174



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>OST4_HUMAN (Q9Y661) Heparan sulfate glucosamine 3-O-sulfotransferase 4 (EC|
           2.8.2.23) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 4) (Heparan sulfate
           3-O-sulfotransferase 4) (h3-OST-4)
          Length = 456

 Score = 29.3 bits (64), Expect = 9.7
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 296 QPPACRTEPHPRPATPRLMCVPSPVEVEAMSCGAALPPVHYPGKGQ 433
           + P    EP P P  P L+  P+PV + A S   A PP+     G+
Sbjct: 67  ESPGAAAEPPPSPPPPSLL--PTPVRLGAPSQPPAPPPLDNASHGE 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,280,838
Number of Sequences: 219361
Number of extensions: 1778969
Number of successful extensions: 5283
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5269
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5596027262
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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