ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2n18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA... 862 0.0
2ref|XM_462664.1| Oryza sativa (japonica cultivar-group), predic... 206 7e-50
3dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mR... 200 5e-48
4gb|AY104294.1| Zea mays PCO116917 mRNA sequence 168 2e-38
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 74 7e-10
6emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 74 7e-10
7emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC... 48 0.041
8gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP... 46 0.16
9ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.16
10ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); ze... 46 0.16
11emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in... 46 0.16
12gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.16
13gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.16
14gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.16
15gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precurs... 46 0.16
16gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase... 46 0.16
17dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds 46 0.16
18gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, com... 44 0.64
19gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.64
20gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase... 44 0.64
21dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 44 0.64
22gb|AF159948.1|AF159948 Prunus armeniaca zeaxanthin epoxidase (ZE... 44 0.64
23gb|AF071888.1|AF071888 Prunus armeniaca zeaxanthin epoxidase (ZE... 44 0.64
24emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chr... 44 0.64
25gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, comple... 44 0.64
26gb|AC123982.10| Pan troglodytes clone rp43-39b11, complete sequence 42 2.5
27gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, co... 42 2.5
28gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y,... 42 2.5
29gb|AC078882.8| Homo sapiens BAC clone RP11-194C2 from 2, complet... 42 2.5
30gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y,... 42 2.5
31ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P... 42 2.5
32gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, comple... 42 2.5
33gb|AC005261.2| Homo sapiens chromosome 19, CIT-HSP-444n24, compl... 42 2.5
34emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chr... 42 2.5 
>gb|AF384103.2| Triticum aestivum zeaxanthin epoxidase (WZE) mRNA, partial cds
          Length = 1411

 Score =  862 bits (435), Expect = 0.0
 Identities = 653/716 (91%), Gaps = 13/716 (1%)
 Strand = Plus / Minus

                                                                        
Query: 9    tatgaacacgtgttaataggcacaacaatgtagtatg-tatgtactcctattacagtggc 67
            |||||||||||||||||||||||||||||||| | |  || ||||   ||||||||||||
Sbjct: 1367 tatgaacacgtgttaataggcacaacaatgtactgtactaggtacaa-tattacagtggc 1309

                                                                        
Query: 68   aacagctaaaa-ttgcctacccctattgtacaccctcagttctttc-catcgaactgcga 125
            ||||||||||| |||||||||| |||||||||||||| |||||||  | | ||||||| |
Sbjct: 1308 aacagctaaaaattgcctaccc-tattgtacaccctcggttctttttcgtagaactgcaa 1250

                                                                        
Query: 126  cgtagtaactctgtcagaagctattcaaaaccctgttctggcatatcttgatgagtacaa 185
            |||||||| |||||||||||||| |||||| |||| | ||| |||||| ||||||| |||
Sbjct: 1249 cgtagtaattctgtcagaagctactcaaaatcctgctttgg-atatctggatgagtgcaa 1191

                                                                        
Query: 186  aaattacaattccttttcttggcggtgatgcagtgtcggctgnnnnnnnactgaagaatg 245
            || ||||||||| |||||||  |  |||||||||||||||||       |||||||||||
Sbjct: 1190 aagttacaattctttttctttcca-tgatgcagtgtcggctgttt----actgaagaatg 1136

                                                                        
Query: 246  ct--acagtggctggtgacaaggggtggctgaagtccccactcatgctgcctgcagaact 303
            ||  |||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 1135 ctgtacagtggctggtgacaaggggtcgttgaagtccccactcatgctgcctgcagaact 1076

                                                                        
Query: 304  tctcccccgcctctcgccgagtcgtatgggagcgcgctgagcaccttcacccggaacatg 363
            |||||||| |||||||| |||||||| || |||| ||| |||||||||||||||||||||
Sbjct: 1075 tctccccctcctctcgcggagtcgtacggaagcgtgctcagcaccttcacccggaacatg 1016

                                                                        
Query: 364  gccttcttgtctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagttt 423
            |||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||||||||
Sbjct: 1015 gccttcttgtctgagccaaattcgatggcatcggaagggtggaaacgaactgggaagttt 956

                                                                        
Query: 424  ggaggtaaccggtagcgcctaccttcgttgtcattaaaccatgtaccgtgctcgcttccg 483
            ||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| 
Sbjct: 955  ggaggtaaccggtagcgtctgccttcgttgtcgttaaaccatgtaccgtgctcgcttccc 896

                                                                        
Query: 484  agatcggtcaaatagaaacccttgttcttgcatgtgatagtagcatggatctctgatact 543
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 895  agatcggtcaaatagaaacccttattcttgcatgtgatagtagcatggatctctgatact 836

                                                                        
Query: 544  tgtggcaagggcaacgacaacgaagaatcagaattgctcggatctggtttgcttccaata 603
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835  tgtggcaaggggaacgacaacgaagaatcagaattgctcggatctggtttgcttccaata 776

                                                                        
Query: 604  gagagtgtcctctgctcatccctgatcaaacgaatgggctgcaaggcggagtcatctcca 663
            |||||||||||||| |||||||||||||||||||||||||||||||| |||||  |||||
Sbjct: 775  gagagtgtcctctgttcatccctgatcaaacgaatgggctgcaaggcagagtcgcctcca 716

                                                                    
Query: 664  gagctcatagggaagaggtaccactctccacccatagcttgttccagtgcatcgtc 719
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 715  gagctcatagggaagaggtaccactctccacccatagcttgttccaatgcatcgtc 660
to top
>ref|XM_462664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1959

 Score =  206 bits (104), Expect = 7e-50
 Identities = 328/404 (81%), Gaps = 9/404 (2%)
 Strand = Plus / Minus

                                                                        
Query: 328  tatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaactcg 387
            |||||||||| ||| ||||||||||| ||||||| |||||| || |||||||||||||| 
Sbjct: 1916 tatgggagcgtgctcagcaccttcacacggaacacggcctttttatctgaaccaaactca 1857

                                                                        
Query: 388  atggcatccgaagggtgaaaacgaaccgggaagtttggaggtaaccggtagcgcctacct 447
            ||||||||||| || || ||||| || |||||||| |||||||  || ||||| ||||||
Sbjct: 1856 atggcatccgagggatggaaacggacagggaagttcggaggtacgcgatagcgtctacct 1797

                                                                        
Query: 448  tcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaacccttg 507
            ||||||||  ||| ||||||||| || || |||||   ||| |||| ||| ||  |||| 
Sbjct: 1796 tcgttgtcggtaatccatgtaccatgttcacttccattatcagtcacataaaaggcctta 1737

                                                                        
Query: 508  ttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaacgacaacgaa 567
            |||||||||||||||||||||||| | |||||||  |||||||||||||| | ||  |||
Sbjct: 1736 ttcttgcatgtgatagtagcatggttttctgatatctgtggcaagggcaatgccagggaa 1677

                                                                        
Query: 568  gaatcagaattgctcggatctggtttgcttccaatagagagtgtcctctgctcatccctg 627
            | |   |||||||| |||||||    ||||||||| ||||||| | | |  |||||||||
Sbjct: 1676 gcagtcgaattgctgggatctgaccggcttccaatggagagtgactttttttcatccctg 1617

                                                                        
Query: 628  atcaaacgaatgggctgcaaggcggagtcatctccagagctcatagggaagaggtaccac 687
            || || |||||||| ||| ||         |||||||| ||  | |||| ||||||||||
Sbjct: 1616 attaatcgaatgggttgcgag---------tctccagaacttgtggggaggaggtaccac 1566

                                                        
Query: 688  tctccacccatagcttgttccagtgcatcgtcatcctgaaacca 731
            ||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 1565 tctccacccatggcttgttccaatgcatcgtcatcctcaaacca 1522
to top
>dbj|AB050884.1| Oryza sativa (japonica cultivar-group) OsABA2 mRNA for zeaxanthin
            epoxidase, complete cds
          Length = 2345

 Score =  200 bits (101), Expect = 5e-48
 Identities = 329/405 (81%), Gaps = 10/405 (2%)
 Strand = Plus / Minus

                                                                        
Query: 328  tatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaactcg 387
            |||||||||| ||| ||||||||||| ||||||| |||||| || |||||||||||||| 
Sbjct: 2109 tatgggagcgtgctcagcaccttcacacggaacacggcctttttatctgaaccaaactca 2050

                                                                        
Query: 388  atggcatccgaagggtgaaaacgaaccgggaagtttggaggta-accggtagcgcctacc 446
            ||||||||||| || || ||||| || |||||||| |||||||  ||| ||||| |||||
Sbjct: 2049 atggcatccgagggatggaaacggacagggaagttcggaggtacgccgatagcgtctacc 1990

                                                                        
Query: 447  ttcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaaccctt 506
            |||||||||  ||| ||||||||| || || |||||   ||| |||| ||| ||  ||||
Sbjct: 1989 ttcgttgtcggtaatccatgtaccatgttcacttccattatcagtcacataaaaggcctt 1930

                                                                        
Query: 507  gttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaacgacaacga 566
             |||||||||||||||||||||||| | |||||||  |||||||||||||| | ||  ||
Sbjct: 1929 attcttgcatgtgatagtagcatggttttctgatatctgtggcaagggcaatgccaggga 1870

                                                                        
Query: 567  agaatcagaattgctcggatctggtttgcttccaatagagagtgtcctctgctcatccct 626
            || |   |||||||| |||||||    ||||||||| ||||||| | | |  ||||||||
Sbjct: 1869 agcagtcgaattgctgggatctgaccggcttccaatggagagtgactttttttcatccct 1810

                                                                        
Query: 627  gatcaaacgaatgggctgcaaggcggagtcatctccagagctcatagggaagaggtacca 686
            ||| || |||||||| ||| ||         |||||||| ||  | |||| |||||||||
Sbjct: 1809 gattaatcgaatgggttgcgag---------tctccagaacttgtggggaggaggtacca 1759

                                                         
Query: 687  ctctccacccatagcttgttccagtgcatcgtcatcctgaaacca 731
            |||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 1758 ctctccacccatggcttgttccaatgcatcgtcatcctcaaacca 1714
to top
>gb|AY104294.1| Zea mays PCO116917 mRNA sequence
          Length = 1342

 Score =  168 bits (85), Expect = 2e-38
 Identities = 196/233 (84%)
 Strand = Plus / Minus

                                                                       
Query: 325 tcgtatgggagcgcgctgagcaccttcacccggaacatggccttcttgtctgaaccaaac 384
           ||||||||||||| | | |||||||||||||||||||| |||||||| || |||||||||
Sbjct: 914 tcgtatgggagcgtgttcagcaccttcacccggaacatagccttcttatcggaaccaaac 855

                                                                       
Query: 385 tcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaaccggtagcgccta 444
           || ||| |||| ||||| || |||||||||||||||||||| || |  ||||| || |||
Sbjct: 854 tcaatgacatcggaaggatggaaacgaaccgggaagtttggtggcacgcggtaacgtcta 795

                                                                       
Query: 445 ccttcgttgtcattaaaccatgtaccgtgctcgcttccgagatcggtcaaatagaaaccc 504
           ||||| |||||  ||| ||| ||||| || || || |||||||| |||| ||||||| ||
Sbjct: 794 ccttcattgtcggtaatccaggtaccatgttcactcccgagatcagtcagatagaaagcc 735

                                                                
Query: 505 ttgttcttgcatgtgatagtagcatggatctctgatacttgtggcaagggcaa 557
           || |||||||| ||||||||||||||  | |||||||  ||||| ||||||||
Sbjct: 734 ttattcttgcacgtgatagtagcatgcctttctgatatctgtggaaagggcaa 682



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 53/57 (92%)
 Strand = Plus / Minus

                                                                    
Query: 675 gaagaggtaccactctccacccatagcttgttccagtgcatcgtcatcctgaaacca 731
           |||||||||||| ||||||||||||||||||||||| ||||||||||| | ||||||
Sbjct: 561 gaagaggtaccattctccacccatagcttgttccagcgcatcgtcatcgtcaaacca 505



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                           
Query: 598 ccaatagagagtgtcctctgctcatccctgatcaaacgaatgggctgc 645
           |||| |||||||| ||||||||||||||| || |||||||||||||||
Sbjct: 641 ccaacagagagtgacctctgctcatccctaattaaacgaatgggctgc 594
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                            
Query: 373      tctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaac 432
                |||||||||||||| ||||||||||| || || ||||| || |||||||| |||||||  
Sbjct: 22350882 tctgaaccaaactcaatggcatccgagggatggaaacggacagggaagttcggaggtacg 22350823

                                     
Query: 433      cggtagcgcctaccttcgttg 453
                || ||||| ||||||||||||
Sbjct: 22350822 cgatagcgtctaccttcgttg 22350802



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                              
Query: 686      actctccacccatagcttgttccagtgcatcgtcatcctgaaacca 731
                ||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 22350073 actctccacccatggcttgttccaatgcatcgtcatcctcaaacca 22350028



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 503      ccttgttcttgcatgtgatagtagcatggatctctgata 541
                |||| |||||||||||||||||||||||| | |||||||
Sbjct: 22350662 ccttattcttgcatgtgatagtagcatggttttctgata 22350624



 Score = 48.1 bits (24), Expect = 0.041
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 328      tatgggagcgcgctgagcaccttcacccggaacatggcct 367
                |||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 22351048 tatgggagcgtgctcagcaccttcacacggaacacggcct 22351009



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 65       ggcaacagctaaaattgcctacccctattg 94
                ||||||||||||||||||||  ||||||||
Sbjct: 22351331 ggcaacagctaaaattgcctgtccctattg 22351302
to top
>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
              complete sequence
          Length = 147214

 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 70/81 (86%)
 Strand = Plus / Minus

                                                                          
Query: 373    tctgaaccaaactcgatggcatccgaagggtgaaaacgaaccgggaagtttggaggtaac 432
              |||||||||||||| ||||||||||| || || ||||| || |||||||| |||||||  
Sbjct: 101786 tctgaaccaaactcaatggcatccgagggatggaaacggacagggaagttcggaggtacg 101727

                                   
Query: 433    cggtagcgcctaccttcgttg 453
              || ||||| ||||||||||||
Sbjct: 101726 cgatagcgtctaccttcgttg 101706



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 43/46 (93%)
 Strand = Plus / Minus

                                                            
Query: 686    actctccacccatagcttgttccagtgcatcgtcatcctgaaacca 731
              ||||||||||||| |||||||||| |||||||||||||| ||||||
Sbjct: 100977 actctccacccatggcttgttccaatgcatcgtcatcctcaaacca 100932



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                     
Query: 503    ccttgttcttgcatgtgatagtagcatggatctctgata 541
              |||| |||||||||||||||||||||||| | |||||||
Sbjct: 101566 ccttattcttgcatgtgatagtagcatggttttctgata 101528



 Score = 48.1 bits (24), Expect = 0.041
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                      
Query: 328    tatgggagcgcgctgagcaccttcacccggaacatggcct 367
              |||||||||| ||| ||||||||||| ||||||| |||||
Sbjct: 101952 tatgggagcgtgctcagcaccttcacacggaacacggcct 101913



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 65     ggcaacagctaaaattgcctacccctattg 94
              ||||||||||||||||||||  ||||||||
Sbjct: 102235 ggcaacagctaaaattgcctgtccctattg 102206
to top
>emb|AL139076.2|CJ11168X3 Campylobacter jejuni subsp. jejuni NCTC 11168 complete genome; segment
              3/6
          Length = 317511

 Score = 48.1 bits (24), Expect = 0.041
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 170    atcttgatgagtacaaaaattacaattc 197
              |||||||||||||||||||| |||||||
Sbjct: 283687 atcttgatgagtacaaaaataacaattc 283714
to top
>gb|AY842302.1| Thellungiella halophila zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2162

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 1982 gccttcttatctgaaccaaactcgatg 1956
to top
>ref|NM_180954.1| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.1 mRNA,
            complete cds
          Length = 2373

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2062 gccttcttatctgaaccaaactcgatg 2036
to top
>ref|NM_126103.2| Arabidopsis thaliana ABA1 (ABA DEFICIENT 1); zeaxanthin epoxidase
            AT5G67030 (ABA1) transcript variant AT5G67030.2 mRNA,
            complete cds
          Length = 2377

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2066 gccttcttatctgaaccaaactcgatg 2040
to top
>emb|CR388065.20| Zebrafish DNA sequence from clone DKEY-119P2 in linkage group 5,
             complete sequence
          Length = 122916

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 605   agagtgtcctctgctcatccctg 627
             |||||||||||||||||||||||
Sbjct: 77003 agagtgtcctctgctcatccctg 76981
to top
>gb|AY093145.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2297

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 1996 gccttcttatctgaaccaaactcgatg 1970
to top
>gb|AY081304.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2520

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2209 gccttcttatctgaaccaaactcgatg 2183
to top
>gb|AF281655.1|AF281655 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) mRNA, complete cds
          Length = 2314

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2002 gccttcttatctgaaccaaactcgatg 1976
to top
>gb|BT002560.1| Arabidopsis thaliana zeaxanthin epoxidase precursor (At5g67030) mRNA,
            complete cds
          Length = 2178

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2121 gccttcttatctgaaccaaactcgatg 2095
to top
>gb|AF134578.1|AF134578 Arabidopsis thaliana zeaxanthin epoxidase mRNA, complete cds
          Length = 2323

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2057 gccttcttatctgaaccaaactcgatg 2031
to top
>dbj|AB030296.1| Arabidopsis thaliana AtABA1 mRNA, complete cds
          Length = 2345

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 364  gccttcttgtctgaaccaaactcgatg 390
            |||||||| ||||||||||||||||||
Sbjct: 2062 gccttcttatctgaaccaaactcgatg 2036
to top
>gb|AC154262.1| Mus musculus chromosome 14 clone RP24-304G19, complete sequence
          Length = 162962

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 184    aaaaattacaattccttttctt 205
              ||||||||||||||||||||||
Sbjct: 132787 aaaaattacaattccttttctt 132766
to top
>gb|AF283761.1|AF283761 Arabidopsis thaliana zeaxanthin epoxidase (ZEP) gene, complete cds
          Length = 3605

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 365  ccttcttgtctgaaccaaactcgatg 390
            ||||||| ||||||||||||||||||
Sbjct: 3238 ccttcttatctgaaccaaactcgatg 3213
to top
>gb|AF134577.1|AF134577 Arabidopsis thaliana zeaxanthin epoxidase gene, complete cds
          Length = 4807

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                      
Query: 365  ccttcttgtctgaaccaaactcgatg 390
            ||||||| ||||||||||||||||||
Sbjct: 3745 ccttcttatctgaaccaaactcgatg 3720
to top
>dbj|AB026640.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10
          Length = 31132

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 365   ccttcttgtctgaaccaaactcgatg 390
             ||||||| ||||||||||||||||||
Sbjct: 26568 ccttcttatctgaaccaaactcgatg 26593
to top
>gb|AF159948.1|AF159948 Prunus armeniaca zeaxanthin epoxidase (ZEAEPOX2) mRNA, complete cds
          Length = 2205

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 682  taccactctccacccatagcttgttccagtgcatcgtcatcctgaaacca 731
            |||||||||||| | |||||  | ||||||||||| ||||||| ||||||
Sbjct: 1674 taccactctccatcgatagcacgctccagtgcatcatcatcctcaaacca 1625
to top
>gb|AF071888.1|AF071888 Prunus armeniaca zeaxanthin epoxidase (ZEAEPOX) mRNA, complete cds
          Length = 2323

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 682  taccactctccacccatagcttgttccagtgcatcgtcatcctgaaacca 731
            |||||||||||| | |||||  | ||||||||||| ||||||| ||||||
Sbjct: 1674 taccactctccatcgatagcacgctccagtgcatcatcatcctcaaacca 1625
to top
>emb|CT571274.6| Mouse DNA sequence from clone RP24-142M17 on chromosome 14, complete
              sequence
          Length = 178159

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 184    aaaaattacaattccttttctt 205
              ||||||||||||||||||||||
Sbjct: 128657 aaaaattacaattccttttctt 128636
to top
>gb|AC139184.4| Mus musculus BAC clone RP24-114G18 from 8, complete sequence
          Length = 166104

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 30    acaacaatgtagtatgtatgta 51
             ||||||||||||||||||||||
Sbjct: 33467 acaacaatgtagtatgtatgta 33488
to top
>gb|AC123982.10| Pan troglodytes clone rp43-39b11, complete sequence
          Length = 186239

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 662    cagagctcatagggaagaggtaccactct 690
              ||||||||||| || ||||||||||||||
Sbjct: 159160 cagagctcataaggcagaggtaccactct 159132
to top
>gb|AC103777.14| Homo sapiens chromosome 8, clone RP11-460G23, complete sequence
          Length = 164588

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 489    ggtcaaatagaaacccttgtt 509
              |||||||||||||||||||||
Sbjct: 125779 ggtcaaatagaaacccttgtt 125799
to top
>gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y, complete sequence
          Length = 173242

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 604    gagagtgtcctctgctcatcc 624
              |||||||||||||||||||||
Sbjct: 142378 gagagtgtcctctgctcatcc 142398
to top
>gb|AC078882.8| Homo sapiens BAC clone RP11-194C2 from 2, complete sequence
          Length = 87351

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 677   agaggtaccactctccaccca 697
             |||||||||||||||||||||
Sbjct: 60192 agaggtaccactctccaccca 60212
to top
>gb|AC009947.2|AC009947 Homo sapiens BAC clone RP11-39P20 from Y, complete sequence
          Length = 149230

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 604   gagagtgtcctctgctcatcc 624
             |||||||||||||||||||||
Sbjct: 22639 gagagtgtcctctgctcatcc 22619
to top
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2
               (P1-P2-P3-IR2@) on chromosome Y
          Length = 4538292

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 604     gagagtgtcctctgctcatcc 624
               |||||||||||||||||||||
Sbjct: 4401156 gagagtgtcctctgctcatcc 4401176



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 604     gagagtgtcctctgctcatcc 624
               |||||||||||||||||||||
Sbjct: 1647684 gagagtgtcctctgctcatcc 1647664
to top
>gb|AC131687.4| Mus musculus BAC clone RP23-379C1 from 14, complete sequence
          Length = 176044

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 510    cttgcatgtgatagtagcatg 530
              |||||||||||||||||||||
Sbjct: 158657 cttgcatgtgatagtagcatg 158637
to top
>gb|AC005261.2| Homo sapiens chromosome 19, CIT-HSP-444n24, complete sequence
          Length = 190708

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 662   cagagctcatagggaagaggtaccactct 690
             ||||||||||| || ||||||||||||||
Sbjct: 79782 cagagctcataaggcagaggtaccactct 79754
to top
>emb|AL844881.5| Mouse DNA sequence from clone RP23-244B19 on chromosome 2, complete
             sequence
          Length = 219340

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 493   aaatagaaacccttgttcttg 513
             |||||||||||||||||||||
Sbjct: 31326 aaatagaaacccttgttcttg 31346


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,029,696
Number of Sequences: 3902068
Number of extensions: 6029696
Number of successful extensions: 100671
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100540
Number of HSP's gapped (non-prelim): 124
length of query: 731
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 708
effective length of database: 17,143,297,704
effective search space: 12137454774432
effective search space used: 12137454774432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
to top