ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2n05 |
|---|---|
| Clone Library Name | barley_pub |
>N2B_HAEIR (P46441) Putative ATPase N2B (HFN2B)| Length = 464 Score = 94.4 bits (233), Expect = 3e-19 Identities = 54/141 (38%), Positives = 83/141 (58%) Frame = -1 Query: 718 LCGRPVGAADYIAIARNYHTIFISDLPAMSMKIRDKARRFITLIDEMYNHHCRLICLATL 539 LC RP+G +DYI I + +HT+ I D+P +++ ++ + RRFITLID +Y++ R++ A + Sbjct: 335 LCNRPLGGSDYIQIGQFFHTVLIHDVPQLTLLLKSQMRRFITLIDTLYDNRVRVVISAEV 394 Query: 538 PIDNLFQGTEEGPLFDLESFQFETEAEGSKLRRDVSAEGNVGVGPSTKGLVSMLSGQEEM 359 P+D LF T++ DL A+ ++ D G+ T S+ +G+EEM Sbjct: 395 PLDQLFSFTDKPK--DL--------ADEQRMLMDDLKLGD------TDTSASVFTGEEEM 438 Query: 358 FAFRRAISRLIEMQTPLYLER 296 FAF R ISRL EMQ Y E+ Sbjct: 439 FAFDRTISRLYEMQKKEYWEQ 459
>AFG1_YEAST (P32317) Protein AFG1| Length = 509 Score = 71.2 bits (173), Expect = 3e-12 Identities = 42/135 (31%), Positives = 65/135 (48%) Frame = -1 Query: 718 LCGRPVGAADYIAIARNYHTIFISDLPAMSMKIRDKARRFITLIDEMYNHHCRLICLATL 539 LCG P+ A DY+ +A+N+ ++D+P +S+ +RD+ RRFIT +D +Y+ +L Sbjct: 367 LCGEPLAAGDYLTLAKNFEAFIVTDIPYLSIYVRDEVRRFITFLDAVYDSGGKLATTGAA 426 Query: 538 PIDNLFQGTEEGPLFDLESFQFETEAEGSKLRRDVSAEGNVGVGPSTKGLVSMLSGQEEM 359 +LF E+ L D E E + G M + EE Sbjct: 427 DFSSLFVEPEQ-ILNDFELRPTTKEPDSVDTGMVDEMVEKHGFSKEIAKKSQMFALDEER 485 Query: 358 FAFRRAISRLIEMQT 314 FAF RA+SRL +M + Sbjct: 486 FAFARALSRLSQMSS 500
>YHCM_ECOLI (P64612) Hypothetical protein yhcM| Length = 375 Score = 63.5 bits (153), Expect = 6e-10 Identities = 27/68 (39%), Positives = 43/68 (63%) Frame = -1 Query: 718 LCGRPVGAADYIAIARNYHTIFISDLPAMSMKIRDKARRFITLIDEMYNHHCRLICLATL 539 LC DYIA++R +HT+ + D+P M+ + +ARRFI L+DE Y H +L+ A + Sbjct: 278 LCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEV 337 Query: 538 PIDNLFQG 515 P+ ++QG Sbjct: 338 PLYEIYQG 345
>YHCM_ECO57 (P64613) Hypothetical protein yhcM| Length = 375 Score = 63.5 bits (153), Expect = 6e-10 Identities = 27/68 (39%), Positives = 43/68 (63%) Frame = -1 Query: 718 LCGRPVGAADYIAIARNYHTIFISDLPAMSMKIRDKARRFITLIDEMYNHHCRLICLATL 539 LC DYIA++R +HT+ + D+P M+ + +ARRFI L+DE Y H +L+ A + Sbjct: 278 LCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVSAEV 337 Query: 538 PIDNLFQG 515 P+ ++QG Sbjct: 338 PLYEIYQG 345
>TGFB1_CAVPO (Q9Z1Y6) Transforming growth factor beta-1 precursor (TGF-beta-1)| [Contains: Latency-associated peptide (LAP)] Length = 390 Score = 35.0 bits (79), Expect = 0.23 Identities = 24/73 (32%), Positives = 34/73 (46%) Frame = -1 Query: 493 DLESFQFETEAEGSKLRRDVSAEGNVGVGPSTKGLVSMLSGQEEMFAFRRAISRLIEMQT 314 +LE F+F + E N G+GP +G ++ + G F L+ M T Sbjct: 213 ELEGFRFSAHCSCDSKDNTLRVEIN-GIGPKRRGDLAAIHGMNRPF--------LLLMAT 263 Query: 313 PLYLERVQHVHSS 275 PL ER QH+HSS Sbjct: 264 PL--ERAQHLHSS 274
>XYNB_BACST (Q9ZFM2) Beta-xylosidase (EC 3.2.1.37) (1,4-beta-D-xylan| xylohydrolase) (Xylan 1,4-beta-xylosidase) Length = 504 Score = 32.3 bits (72), Expect = 1.5 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Frame = +3 Query: 69 LLISLVLHTYTRYSFRQCRAWLLQP-HSPTFPRLFLQERIEWYYQVYK--GAD*ETVLCF 239 L++++V H RY + R WL + + P + + Y+++Y+ ++V Sbjct: 133 LIVAVVSHFIERYGIEEVRTWLFEVWNEPNLVNFWKDANKQEYFKLYEVTARAVKSVDPH 192 Query: 240 VRTGAPCCC*SPEEW 284 ++ G P C +EW Sbjct: 193 LQVGGPAICGGSDEW 207
>Y2094_SHIFL (P37787) Hypothetical protein SF2094/S2216 (ORF10X9)| Length = 163 Score = 31.6 bits (70), Expect = 2.6 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%) Frame = -1 Query: 481 FQFETEAEGSKLR-RDVSAEGNVGVGPSTKGLVSMLSGQEEMFAFRRAISRLIEMQTPLY 305 F+ ETE L R E N G ++G VS LS + F + I +L ++ PLY Sbjct: 23 FEIETELTIHALELRMKYGEVNTKYGERSEGSVSKLSTWSDGFKILKTIIKLYSLERPLY 82 Query: 304 LERVQHVHSSGLQQQQGAPVL 242 + V + L G P++ Sbjct: 83 FFSIIGVLLAALSIILGLPII 103
>R13L4_ARATH (Q38834) Putative disease resistance RPP13-like protein 4| Length = 852 Score = 30.8 bits (68), Expect = 4.4 Identities = 25/99 (25%), Positives = 48/99 (48%) Frame = -2 Query: 381 CCLVKKRCLRSEGRYLGS*KCRPRCISSVSSMSILLGFNNSRAPLFSQNRALSLSLLPCR 202 C ++ K+ L + GS +C P+ I S+ + +LLGF +R+ N LS + Sbjct: 629 CIVLFKKLLVLDMTNCGSLECFPKGIGSLVKLEVLLGFKPARS-----NNGCKLSEV--- 680 Query: 201 LGSTILFVPVKIISETSGNEVGEAKLDIVGNCIEYMYVT 85 + + +S T G+++ E +LD + N + M ++ Sbjct: 681 --KNLTNLRKLGLSLTRGDQIEEEELDSLINLSKLMSIS 717
>SIM1_HUMAN (P81133) Single-minded homolog 1| Length = 766 Score = 30.4 bits (67), Expect = 5.7 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 10/84 (11%) Frame = -2 Query: 273 GFNNSRAPLFSQNRALSLSLLPCRLGSTILFVP---VKIISETSGNEVGEAKLDIVGNCI 103 G ++ +PL + R L LL G + P + ISET+ +G +++++ GN I Sbjct: 65 GHSSRTSPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSI 124 Query: 102 -EYMY------VTQVISARHPVAS 52 EY++ +T V++A P S Sbjct: 125 YEYIHPADHDEMTAVLTAHQPYHS 148
>TAOK3_MOUSE (Q8BYC6) Serine/threonine-protein kinase TAO3 (EC 2.7.11.1)| (Thousand and one amino acid protein 3) Length = 898 Score = 30.0 bits (66), Expect = 7.5 Identities = 17/43 (39%), Positives = 26/43 (60%) Frame = -1 Query: 526 LFQGTEEGPLFDLESFQFETEAEGSKLRRDVSAEGNVGVGPST 398 LFQ T GPL + + + + E +GS L R+V + G++ PST Sbjct: 312 LFQETRNGPLNESQEEEEDGE-QGSNLNREVDSLGSIHSIPST 353
>SIM1_MOUSE (Q61045) Single-minded homolog 1 (mSIM1)| Length = 765 Score = 30.0 bits (66), Expect = 7.5 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 10/84 (11%) Frame = -2 Query: 273 GFNNSRAPLFSQNRALSLSLLPCRLGSTILFVP---VKIISETSGNEVGEAKLDIVGNCI 103 G + +PL + R L LL G + P + ISET+ +G +++++ GN I Sbjct: 65 GHTSRTSPLDNVGRELGSHLLQTLDGFIFVVAPDGKIMYISETASVHLGLSQVELTGNSI 124 Query: 102 -EYMY------VTQVISARHPVAS 52 EY++ +T V++A P S Sbjct: 125 YEYIHPADHDEMTAVLTAHQPYHS 148
>GLMS_ACIAD (Q6F6U8) Glucosamine--fructose-6-phosphate aminotransferase| [isomerizing] (EC 2.6.1.16) (Hexosephosphate aminotransferase) (D-fructose-6-phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase) (Glucosamine-6-ph Length = 611 Score = 30.0 bits (66), Expect = 7.5 Identities = 20/53 (37%), Positives = 26/53 (49%) Frame = -1 Query: 550 LATLPIDNLFQGTEEGPLFDLESFQFETEAEGSKLRRDVSAEGNVGVGPSTKG 392 LA LP+ N F EEG + L E A G K+ R V E + V ++KG Sbjct: 193 LALLPVTNRFVYLEEGDIARLTRDSIEIYAHGVKIERPVK-ELDASVSNASKG 244
>AP3S2_PONPY (Q5RDP9) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 30.0 bits (66), Expect = 7.5 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Frame = -1 Query: 712 GRPVGAADYIAIARNYHT---IFISDLPAMSMKIRDKARRFITLIDEMYNHHCRLICLAT 542 G +G +DY I R+Y T +F D + I D + F+ +D+ + + C L + Sbjct: 53 GSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH 112 Query: 541 L-PIDNLFQGTEEGPLFDLESFQFETEAEGSKLRRDVSAEGNVGVGPS 401 + + + Q G + LE+ E A+ R +EG + P+ Sbjct: 113 MDKVHYILQEVVMGGMV-LETNMNEIVAQIEAQNRLEKSEGGLSAAPA 159
>AP3S2_MOUSE (Q8BSZ2) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 30.0 bits (66), Expect = 7.5 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Frame = -1 Query: 712 GRPVGAADYIAIARNYHT---IFISDLPAMSMKIRDKARRFITLIDEMYNHHCRLICLAT 542 G +G +DY I R+Y T +F D + I D + F+ +D+ + + C L + Sbjct: 53 GSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH 112 Query: 541 L-PIDNLFQGTEEGPLFDLESFQFETEAEGSKLRRDVSAEGNVGVGPS 401 + + + Q G + LE+ E A+ R +EG + P+ Sbjct: 113 MDKVHYILQEVVMGGMV-LETNMNEIVAQIEAQNRLEKSEGGLSAAPA 159
>AP3S2_HUMAN (P59780) AP-3 complex subunit sigma-2 (Adapter-related protein| complex 3 sigma-2 subunit) (Sigma-adaptin 3b) (AP-3 complex sigma-3B subunit) (Sigma-3B-adaptin) Length = 193 Score = 30.0 bits (66), Expect = 7.5 Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 4/108 (3%) Frame = -1 Query: 712 GRPVGAADYIAIARNYHT---IFISDLPAMSMKIRDKARRFITLIDEMYNHHCRLICLAT 542 G +G +DY I R+Y T +F D + I D + F+ +D+ + + C L + Sbjct: 53 GSLIGGSDYKLIYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIFH 112 Query: 541 L-PIDNLFQGTEEGPLFDLESFQFETEAEGSKLRRDVSAEGNVGVGPS 401 + + + Q G + LE+ E A+ R +EG + P+ Sbjct: 113 MDKVHYILQEVVMGGMV-LETNMNEIVAQIEAQNRLEKSEGGLSAAPA 159
>GP1BB_MOUSE (P56400) Platelet glycoprotein Ib beta chain precursor (GP-Ib beta)| (GPIbB) (GPIb-beta) (CD42c antigen) Length = 206 Score = 29.6 bits (65), Expect = 9.7 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = +2 Query: 56 ATGCLADITCVTYIYSIQFPTMSSLASPTSFP-DVSEIIFTGTNRMVLP 199 A+GC A +C + ++ + P +FP D +E++ TG N LP Sbjct: 23 ASGCPAPCSCAGTLVDCGRRGLTWASLPAAFPPDTTELVLTGNNLTALP 71 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 106,725,345 Number of Sequences: 219361 Number of extensions: 2265922 Number of successful extensions: 5820 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5614 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5815 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7366267610 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
