ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2n04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SRBP1_RAT (P56720) Sterol regulatory element-binding protein 1 (... 31 3.3
2OL145_MOUSE (Q60882) Olfactory receptor 145 (Olfactory receptor ... 31 3.3
3YFF9_SCHPO (O14066) Hypothetical serine-rich protein C1687.09 in... 31 4.4
4UBP40_MOUSE (Q8BWR4) Ubiquitin carboxyl-terminal hydrolase 40 (E... 30 9.7

>SRBP1_RAT (P56720) Sterol regulatory element-binding protein 1 (SREBP-1)|
            (Sterol regulatory element-binding transcription factor
            1) (Adipocyte determination- and
            differentiation-dependent factor 1) (ADD1) (Fragment)
          Length = 1024

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = -1

Query: 657  AAFLGYSLILAILRTSKSKGRSFKGDGCSSNSGFCDDPTFCTSTSTNLTKAST*KVCTVI 478
            AA   +    A+L   K +        C   SG+  D    TST++++ KA    +C ++
Sbjct: 881  AALYSFKAARALLDHRKVESSPASLAICEKASGYLRDSLASTSTASSIDKAMQLLLCDLL 940

Query: 477  SVAQLLLW 454
             VA+  LW
Sbjct: 941  LVARTSLW 948



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>OL145_MOUSE (Q60882) Olfactory receptor 145 (Olfactory receptor 7C) (Olfactory|
           receptor 161-6) (Odorant receptor K21)
          Length = 310

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = -1

Query: 714 HEVTVVILLGQKSCTCPSAAAFLGYSLILA-ILRTSKSKGRSFKGDGCSSN 565
           +E+ V I++G      P+   F+ Y+LIL+ ILR S ++GRS     CSS+
Sbjct: 194 NELVVFIVVGI-DIGVPTVTIFISYALILSSILRISSTEGRSKAFSTCSSH 243



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>YFF9_SCHPO (O14066) Hypothetical serine-rich protein C1687.09 in chromosome I|
          Length = 1379

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +1

Query: 94   NSNSQAKSPKFTWKNSSLHWMSGDKFSQIHHER 192
            +++ +  S K  W +SSLH  S + FS IHH +
Sbjct: 927  SAHKRIPSNKTEWSSSSLHIPSHNSFSDIHHRK 959



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>UBP40_MOUSE (Q8BWR4) Ubiquitin carboxyl-terminal hydrolase 40 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 40)
            (Ubiquitin-specific-processing protease 40)
            (Deubiquitinating enzyme 40) (Fragment)
          Length = 1140

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 10/55 (18%)
 Frame = -2

Query: 374  TWKPMMSLRDGDMLMVTQSASP----------WLSPCRTSGGASPRKMLRCARRQ 240
            T K +M +R GD L++T+   P          W  P R SG    R  L CA  Q
Sbjct: 908  TLKELM-IRSGDTLLLTEGKLPPPGHLKMPIWWYQPARLSGHCESRDHLNCAFSQ 961


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,217,854
Number of Sequences: 219361
Number of extensions: 2404225
Number of successful extensions: 5674
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5459
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5672
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7366267610
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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