| Clone Name | rbaal3c03 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | B2_DAUCA (P37707) B2 protein | 140 | 2e-33 | 2 | H6ST3_MOUSE (Q9QYK4) Heparan-sulfate 6-O-sulfotransferase 3 (EC ... | 32 | 0.79 | 3 | METE_AQUAE (O67606) 5-methyltetrahydropteroyltriglutamate--homoc... | 30 | 5.1 | 4 | SMR3A_HUMAN (Q99954) Submaxillary gland androgen-regulated prote... | 30 | 5.1 | 5 | AROK_XYLFA (Q9PDP4) Shikimate kinase (EC 2.7.1.71) (SK) | 29 | 6.7 | 6 | H6ST3_HUMAN (Q8IZP7) Heparan-sulfate 6-O-sulfotransferase 3 (EC ... | 29 | 8.7 |
|---|
>B2_DAUCA (P37707) B2 protein| Length = 207 Score = 140 bits (353), Expect = 2e-33 Identities = 66/79 (83%), Positives = 71/79 (89%) Frame = -2 Query: 515 GTREAASFGGANIDPAAWEDKKCNGESRFPAQVRVATRKICDPLEEDAFRPILHHYDGPK 336 G EAASFGG NIDP AWEDKK GESRFPAQVRV TRKIC+PLEED+FRPILHHYDGPK Sbjct: 126 GVFEAASFGGTNIDPTAWEDKKNQGESRFPAQVRVMTRKICEPLEEDSFRPILHHYDGPK 185 Query: 335 FRLELSITEALSLLDIFED 279 FRLEL+I EA+SLLDIFE+ Sbjct: 186 FRLELNIPEAISLLDIFEE 204
>H6ST3_MOUSE (Q9QYK4) Heparan-sulfate 6-O-sulfotransferase 3 (EC 2.8.2.-)| (HS6ST-3) (mHS6ST-3) Length = 470 Score = 32.3 bits (72), Expect = 0.79 Identities = 20/44 (45%), Positives = 22/44 (50%) Frame = -1 Query: 426 CTGEGGHKEDLRPTGGGRIPPYPAPLRRAQVPARAQHHRGSLPP 295 CT G E LR +G R P P+P RRAQ P R LPP Sbjct: 34 CTNFG---EQLR-SGEARPPAVPSPARRAQAPLDEWERRPQLPP 73
>METE_AQUAE (O67606) 5-methyltetrahydropteroyltriglutamate--homocysteine| methyltransferase (EC 2.1.1.14) (Methionine synthase, vitamin-B12 independent isozyme) (Cobalamin-independent methionine synthase) Length = 761 Score = 29.6 bits (65), Expect = 5.1 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = -2 Query: 326 ELSITEALSLLDIFEDKDDA**RLLSADQGTVEEGTACNKMDW 198 E++ AL+LLD +D ++A +++ D+ EG K DW Sbjct: 575 EIAYQIALALLDEVKDLENAGIKVIQIDEPAFREGAPLKKRDW 617
>SMR3A_HUMAN (Q99954) Submaxillary gland androgen-regulated protein 3 homolog A| precursor (Proline-rich protein 5) (Proline-rich protein PBI) Length = 134 Score = 29.6 bits (65), Expect = 5.1 Identities = 18/34 (52%), Positives = 18/34 (52%) Frame = -1 Query: 390 PTGGGRIPPYPAPLRRAQVPARAQHHRGSLPP*Y 289 P G GRIPP P P P R Q H SLPP Y Sbjct: 70 PYGPGRIPPSPPP---PYGPGRIQSH--SLPPPY 98
>AROK_XYLFA (Q9PDP4) Shikimate kinase (EC 2.7.1.71) (SK)| Length = 180 Score = 29.3 bits (64), Expect = 6.7 Identities = 17/63 (26%), Positives = 30/63 (47%) Frame = -2 Query: 500 ASFGGANIDPAAWEDKKCNGESRFPAQVRVATRKICDPLEEDAFRPILHHYDGPKFRLEL 321 A+ GG +DP E+++C E F +++ + L D +RP+L D + +L Sbjct: 79 ATGGGTILDP---ENRRCMQERGFVVFLKINVNTQLERLAHDRYRPLLQQIDRKQVLSDL 135 Query: 320 SIT 312 T Sbjct: 136 YAT 138
>H6ST3_HUMAN (Q8IZP7) Heparan-sulfate 6-O-sulfotransferase 3 (EC 2.8.2.-)| (HS6ST-3) Length = 471 Score = 28.9 bits (63), Expect = 8.7 Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Frame = -1 Query: 393 RPTGGGRIPP-YPAPLRRAQVPARAQHHRGSLPP 295 +P G PP P P RRAQ P R LPP Sbjct: 40 QPRAGEAGPPAVPGPARRAQAPPEEWERRPQLPP 73 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,387,107 Number of Sequences: 219361 Number of extensions: 1425995 Number of successful extensions: 3766 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3671 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3764 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)