ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ALG8_CAEEL (P52887) Probable dolichyl pyrophosphate Glc1Man9GlcN... 32 2.1
2CHS5_CANAL (O74161) Chitin biosynthesis protein CHS5 32 2.7
3WNT1_XENLA (P10108) Protein Wnt-1 precursor (XWnt-1) (XInt-1) 31 3.5
4ACM4_RAT (P08485) Muscarinic acetylcholine receptor M4 30 6.0
5WNT1_AMBME (P21551) Protein Wnt-1 precursor 30 6.0
6Y448_AQUAE (O66756) Hypothetical UPF0166 protein aq_448 30 7.9
7ACM4_MOUSE (P32211) Muscarinic acetylcholine receptor M4 (Mm4 mA... 30 7.9

>ALG8_CAEEL (P52887) Probable dolichyl pyrophosphate Glc1Man9GlcNAc2|
           alpha-1,3-glucosyltransferase (EC 2.4.1.-)
           (Dolichyl-P-Glc:Glc1Man9GlcNAc2-PP-dolichyl
           glucosyltransferase)
          Length = 758

 Score = 32.0 bits (71), Expect = 2.1
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +2

Query: 134 ALKNTHKHILPLLQTQIGRTNMCRLLFQPSDTLRQARDCISY--SRLLH*SCLRTREHGS 307
           A+KN   H + +  T I   ++  LLF P +TL +   C+SY   +L+    +       
Sbjct: 386 AIKNPKYHSILIHLTCIASFSLFPLLFTPFETLLKYAICVSYFFIQLVFLKRVTLMPLSD 445

Query: 308 ALPDRHLG*WL 340
            +P RH+  WL
Sbjct: 446 LIPTRHVASWL 456



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>CHS5_CANAL (O74161) Chitin biosynthesis protein CHS5|
          Length = 562

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 461 PVLQPRTLSAVERLHKIPAIQTLRSDDCLLPDEF 562
           P+++P  L A ER  +I  ++     DC+LPD F
Sbjct: 235 PIIRPEWLKACERERRIVGVRDFYVKDCVLPDIF 268



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>WNT1_XENLA (P10108) Protein Wnt-1 precursor (XWnt-1) (XInt-1)|
          Length = 371

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 28/94 (29%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
 Frame = -3

Query: 648 EARWHSRECSTLL*WARGS*SWGTK----GRPINSSGRRQSSLRSV*MAGIL*RRSTAER 481
           E +WH R         R +   GT     G+ IN   R  + + ++  AG+     T   
Sbjct: 92  ECKWHFRN-------RRWNCPTGTGNQVFGKIINRGCRETAFVFAITSAGV-----THSV 139

Query: 480 VRGCSTGH*RKCRSCNYRRKRGCSP-WHFSEADD 382
            R CS G    C SC+YRR+    P WH+    D
Sbjct: 140 ARSCSEGSIESC-SCDYRRRGPGGPDWHWGGCSD 172



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>ACM4_RAT (P08485) Muscarinic acetylcholine receptor M4|
          Length = 478

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = +2

Query: 461 PVLQPRTLSAVERLHKIPAIQTLRSDDCLLPDEFIGRPFVPHDQDPLAHYKRVLHSL 631
           P LQPRTL+   +  KI  +     ++C+   E +  P  P    P A+  R   S+
Sbjct: 325 PTLQPRTLNPASKWSKIQIVTKQTGNECVTAIEIV--PATPAGMRPAANVARKFASI 379



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>WNT1_AMBME (P21551) Protein Wnt-1 precursor|
          Length = 369

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
 Frame = -3

Query: 573 GRPINSSGRRQSSLRSV*MAGIL*RRSTAERVRGCSTGH*RKCRSCNYRRKR-GCSPWHF 397
           G+ +N   R  + + ++  AG+     T    R CS G    C +C+YRR+  G + WH+
Sbjct: 113 GKIVNKGCRETAFIFAITSAGV-----THSVARSCSEGSIESC-TCDYRRRGPGGTDWHW 166

Query: 396 SEADD 382
               D
Sbjct: 167 GGCSD 171



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>Y448_AQUAE (O66756) Hypothetical UPF0166 protein aq_448|
          Length = 96

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +3

Query: 261 LDFYIDLAFEQGSMGAPYLTDTLGSGYGLMVHT*SFITISYHLP 392
           L+ YI+  FE G  GA  L    G G G   H+     +SY LP
Sbjct: 16  LEDYINKLFEGGIRGAVVLQGIAGFGKGREFHSEEIEVLSYELP 59



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>ACM4_MOUSE (P32211) Muscarinic acetylcholine receptor M4 (Mm4 mAChR)|
          Length = 479

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +2

Query: 461 PVLQPRTLSAVERLHKIPAIQTLRSDDCLLPDEFIGRPFVPHDQDPLAHYKRVLHSL 631
           P LQPRTL+   +  KI  +      +C+   E +  P  P    P A+  R   S+
Sbjct: 326 PTLQPRTLNPASKWSKIQIVTKQTGSECVTAIEIV--PATPAGMRPAANVARKFASI 380


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,663,158
Number of Sequences: 219361
Number of extensions: 2561900
Number of successful extensions: 6679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6676
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7762912789
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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