ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3b18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009272.1| Triticum aestivum clone wlk8.pk0011.e10:fis, full... 795 0.0
2ref|XM_469653.1| Oryza sativa (japonica cultivar-group), mRNA 313 3e-82
3dbj|AK061913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 313 3e-82
4dbj|AK119226.1| Oryza sativa (japonica cultivar-group) cDNA clon... 313 3e-82
5dbj|AK100404.1| Oryza sativa (japonica cultivar-group) cDNA clon... 313 3e-82
6dbj|AK060674.1| Oryza sativa (japonica cultivar-group) cDNA clon... 313 3e-82
7gb|AY105738.1| Zea mays PCO070960 mRNA sequence 230 4e-57
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 176 5e-41
9gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 176 5e-41
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 176 5e-41
11emb|Z25860.1|FPGHMT2 Flaveria pringlei mRNA for glycine hydroxym... 101 2e-18
12emb|Z25859.1|FPGHMT1 Flaveria pringlei mRNA for glycine hydroxym... 96 1e-16
13emb|Z25863.1|STGHMT S.tuberosum mRNA for glycine hydroxymethyltr... 80 8e-12
14gb|M87649.1|PEASHMTA Pisum sativum serine hydroxymethyltransfera... 76 1e-10
15ref|NM_119954.2| Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYL... 64 5e-07
16emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, ... 64 5e-07
17emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, B... 64 5e-07
18emb|AJ271726.1|ATH271726 Arabidopsis thaliana mRNA for serine hy... 64 5e-07
19gb|AY070726.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co... 64 5e-07
20gb|AY057645.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co... 64 5e-07
21gb|AF428388.1|AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 ... 64 5e-07
22gb|AY054254.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co... 64 5e-07
23gb|BT006353.1| Arabidopsis thaliana At4g37930/F20D10_50 gene, co... 64 5e-07
24emb|BX828432.1|CNS0A3VV Arabidopsis thaliana Full-length cDNA Co... 64 5e-07
25gb|AY089107.1| Arabidopsis thaliana clone 33799 mRNA, complete s... 64 5e-07
26dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone... 62 2e-06
27dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone... 62 2e-06
28ref|NM_180750.1| Arabidopsis thaliana glycine hydroxymethyltrans... 50 0.008
29ref|NM_122560.2| Arabidopsis thaliana glycine hydroxymethyltrans... 50 0.008
30ref|NM_180749.2| Arabidopsis thaliana glycine hydroxymethyltrans... 50 0.008
31gb|BT001097.1| Arabidopsis thaliana clone C104687 (D) putative g... 50 0.008
32gb|AY035117.1| Arabidopsis thaliana putative glycine hydroxymeth... 50 0.008
33dbj|AK220785.1| Arabidopsis thaliana mRNA for glycine hydroxymet... 50 0.008
34gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete seq... 50 0.008
35emb|BX830710.1|CNS09YQU Arabidopsis thaliana Full-length cDNA Co... 50 0.008
36gb|BT001113.1| Arabidopsis thaliana clone C104687 (D) putative g... 50 0.008
37gb|AF416481.1|AF416481 Cicer arietinum hydroxymethyl transferase... 46 0.12
38gb|BT013569.1| Lycopersicon esculentum clone 132307R, mRNA sequence 44 0.46
39gb|AC129335.4| Mus musculus BAC clone RP23-109H7 from chromosome... 44 0.46
40gb|AC164169.8| Mus musculus 6 BAC RP23-413M4 (Roswell Park Cance... 44 0.46
41gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete se... 44 0.46
42gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Canc... 44 0.46
43gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, co... 42 1.8
44emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C... 42 1.8
45emb|AL031985.10|HS228H13 Human DNA sequence from clone RP1-228H1... 42 1.8
46gb|AC012077.4|AC012077 Homo sapiens BAC clone RP11-524G14 from Y... 42 1.8
47gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp... 40 7.2
48ref|XM_745127.1| Aspergillus fumigatus Af293 hypothetical protei... 40 7.2
49emb|Z78199.1|CEK12F2 Caenorhabditis elegans Cosmid K12F2, comple... 40 7.2
50gb|AC104871.8| Mus musculus chromosome 13, clone RP23-281C23, co... 40 7.2
51emb|X08067.1|CEMYO3 Caenorhabditis elegans myo-3 gene for myosin... 40 7.2
52emb|BX323797.10| Zebrafish DNA sequence from clone DKEY-78A14 in... 40 7.2
53gb|AC087847.6| Homo sapiens chromosome 8, clone RP11-353D5, comp... 40 7.2
54gb|AF439728.1|AF439728 Zea mays serine hydroxymethyltransferase ... 40 7.2
55ref|NM_073664.3| Caenorhabditis elegans MYOsin heavy chain struc... 40 7.2
56gb|AC155267.1| Mus musculus BAC clone RP23-248M19 from chromosom... 40 7.2
57dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 7.2
58gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_1... 40 7.2
59gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, compl... 40 7.2
60dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 7.2
61gb|BC084962.1| Xenopus laevis hypothetical LOC495440, mRNA (cDNA... 40 7.2
62gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosom... 40 7.2
63dbj|AB002815.1| Perilla frutescens mRNA for chalcone synthase, c... 40 7.2 
>gb|BT009272.1| Triticum aestivum clone wlk8.pk0011.e10:fis, full insert mRNA
            sequence
          Length = 1878

 Score =  795 bits (401), Expect = 0.0
 Identities = 450/465 (96%), Gaps = 1/465 (0%)
 Strand = Plus / Minus

                                                                        
Query: 72   tatagcatatcagcgaaacatcttacagtatgtgcctgcaataagaaactattgacaaag 131
            ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1793 tatagcatatcagcgaagcatcttacagtatgtgcctgcaataagaaactatcgacaaag 1734

                                                                        
Query: 132  ttcccatattctgtaaaatgcttggattccttttacataagatggcgcttcatcatggat 191
            ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1733 ttcccatattctgtaaaatgcttggattccttttacatatggtggcgcttcatcatggat 1674

                                                                        
Query: 192  ctattgtttacatggacttgtcctcagttgtgcttcctgtttgcttcctt-gctgttgaa 250
            ||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct: 1673 ctattgtttacatggacttgtcctcagctgtgcttcttgtttgcttcctttgctgttgaa 1614

                                                                        
Query: 251  acacagcagtgcttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
            |||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 1613 acacagcagttcttagttcttgtacttcatggtctccttctcgaatccaattgttgggaa 1554

                                                                        
Query: 311  ttgttttgcatattcctccacatcgtggcgaagctttgcaatttcagcttggatgttgct 370
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 ttgtttcgcatattcctccacatcgtggcgaagctttgcaatttcagcttggatgttgct 1494

                                                                        
Query: 371  gtcggattgcaaagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaac 430
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 gtcggattgcaaagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaac 1434

                                                                        
Query: 431  cttcaaagccaagttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctc 490
            |||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 1433 cttcaaggccaagttcactgccgaatcgaagaagtcagcaaccttggcgaagtcctcctc 1374

                                                         
Query: 491  aacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcc 535
            ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1373 aacaaatcctcttgatgtaagtgcgggggttcccatcctgatgcc 1329
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>ref|XM_469653.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2052

 Score =  313 bits (158), Expect = 3e-82
 Identities = 245/274 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 321
            |||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 1675 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1616

                                                                        
Query: 322  attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 381
            ||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 1615 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1556

                                                                        
Query: 382  aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 441
            ||||||||||||||||||||||||| || ||  |||||||||| ||||||||||||||||
Sbjct: 1555 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1496

                                                                        
Query: 442  agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 501
            |||||||||| | ||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 1495 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1436

                                              
Query: 502  ttgatgtaagcgcgggggttcccatcctgatgcc 535
            |||| || || || ||||||||||||||||||||
Sbjct: 1435 ttgaggtcagtgctggggttcccatcctgatgcc 1402



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Minus

                                                                        
Query: 88   aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 147
            |||||||||||||| ||| || | ||||||| |||||||||||||| ||| |  ||||||
Sbjct: 1876 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1818

                                           
Query: 148  aatg-cttggattccttttacataagatggc 177
            |||| |  || | ||||||||||||||||||
Sbjct: 1817 aatgccaggggtcccttttacataagatggc 1787
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>dbj|AK061913.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A08, full
            insert sequence
          Length = 1402

 Score =  313 bits (158), Expect = 3e-82
 Identities = 245/274 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 321
            |||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 1128 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1069

                                                                        
Query: 322  attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 381
            ||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 1068 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1009

                                                                        
Query: 382  aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 441
            ||||||||||||||||||||||||| || ||  |||||||||| ||||||||||||||||
Sbjct: 1008 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 949

                                                                        
Query: 442  agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 501
            |||||||||| | ||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 948  agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 889

                                              
Query: 502  ttgatgtaagcgcgggggttcccatcctgatgcc 535
            |||| || || || ||||||||||||||||||||
Sbjct: 888  ttgaggtcagtgctggggttcccatcctgatgcc 855



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Minus

                                                                        
Query: 88   aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 147
            |||||||||||||| ||| || | ||||||| |||||||||||||| ||| |  ||||||
Sbjct: 1329 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1271

                                           
Query: 148  aatgcttggattcc-ttttacataagatggc 177
            |||||  ||  ||| ||||||||||||||||
Sbjct: 1270 aatgccaggggtcccttttacataagatggc 1240
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>dbj|AK119226.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H12, full
            insert sequence
          Length = 1923

 Score =  313 bits (158), Expect = 3e-82
 Identities = 245/274 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 321
            |||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 1598 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1539

                                                                        
Query: 322  attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 381
            ||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 1538 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1479

                                                                        
Query: 382  aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 441
            ||||||||||||||||||||||||| || ||  |||||||||| ||||||||||||||||
Sbjct: 1478 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1419

                                                                        
Query: 442  agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 501
            |||||||||| | ||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 1418 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1359

                                              
Query: 502  ttgatgtaagcgcgggggttcccatcctgatgcc 535
            |||| || || || ||||||||||||||||||||
Sbjct: 1358 ttgaggtcagtgctggggttcccatcctgatgcc 1325



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Minus

                                                                        
Query: 88   aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 147
            |||||||||||||| ||| || | ||||||| |||||||||||||| ||| |  ||||||
Sbjct: 1799 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1741

                                           
Query: 148  aatg-cttggattccttttacataagatggc 177
            |||| |  || | ||||||||||||||||||
Sbjct: 1740 aatgccaggggtcccttttacataagatggc 1710
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>dbj|AK100404.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086P20, full
            insert sequence
          Length = 1976

 Score =  313 bits (158), Expect = 3e-82
 Identities = 245/274 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 321
            |||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 1599 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1540

                                                                        
Query: 322  attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 381
            ||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 1539 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1480

                                                                        
Query: 382  aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 441
            ||||||||||||||||||||||||| || ||  |||||||||| ||||||||||||||||
Sbjct: 1479 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1420

                                                                        
Query: 442  agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 501
            |||||||||| | ||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 1419 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1360

                                              
Query: 502  ttgatgtaagcgcgggggttcccatcctgatgcc 535
            |||| || || || ||||||||||||||||||||
Sbjct: 1359 ttgaggtcagtgctggggttcccatcctgatgcc 1326



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Minus

                                                                        
Query: 88   aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 147
            |||||||||||||| ||| || | ||||||| |||||||||||||| ||| |  ||||||
Sbjct: 1800 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1742

                                           
Query: 148  aatg-cttggattccttttacataagatggc 177
            |||| |  || | ||||||||||||||||||
Sbjct: 1741 aatgccaggggtcccttttacataagatggc 1711
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>dbj|AK060674.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A01, full
            insert sequence
          Length = 1844

 Score =  313 bits (158), Expect = 3e-82
 Identities = 245/274 (89%)
 Strand = Plus / Minus

                                                                        
Query: 262  cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 321
            |||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 1591 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1532

                                                                        
Query: 322  attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 381
            ||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 1531 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1472

                                                                        
Query: 382  aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 441
            ||||||||||||||||||||||||| || ||  |||||||||| ||||||||||||||||
Sbjct: 1471 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1412

                                                                        
Query: 442  agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 501
            |||||||||| | ||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 1411 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1352

                                              
Query: 502  ttgatgtaagcgcgggggttcccatcctgatgcc 535
            |||| || || || ||||||||||||||||||||
Sbjct: 1351 ttgaggtcagtgctggggttcccatcctgatgcc 1318



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Minus

                                                                        
Query: 88   aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 147
            |||||||||||||| ||| || | ||||||| |||||||||||||| ||| |  ||||||
Sbjct: 1792 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1734

                                           
Query: 148  aatg-cttggattccttttacataagatggc 177
            |||| |  || | ||||||||||||||||||
Sbjct: 1733 aatgccaggggtcccttttacataagatggc 1703
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>gb|AY105738.1| Zea mays PCO070960 mRNA sequence
          Length = 1476

 Score =  230 bits (116), Expect = 4e-57
 Identities = 237/276 (85%), Gaps = 6/276 (2%)
 Strand = Plus / Minus

                                                                        
Query: 263  ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcata 322
            |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct: 1231 ttagttcttgtatttcatggtctctttctcaaatccaattgttgggaattgttttgcaaa 1172

                                                                        
Query: 323  ttcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgcaa 382
            |||||| ||||| ||||||||||||||||| ||| ||||||   |||| || ||||||||
Sbjct: 1171 ttcctctacatcatggcgaagctttgcaatctcaacttgga---tgctatcagattgcaa 1115

                                                                        
Query: 383  agtggcaacaaagtccttcagtttggt---acctgctgctgcagctttaaccttcaaagc 439
            ||||||||||||||||||||| || ||   |||||  | |||||| |||| |||||| ||
Sbjct: 1114 agtggcaacaaagtccttcagctttgttccacctgtcgttgcagccttaatcttcaaggc 1055

                                                                        
Query: 440  caagttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcc 499
            ||  |||||||| | ||||||||| || ||||| || ||||| || || |||||||||||
Sbjct: 1054 cagattcactgctgcatcgaagaagtcagcaactttagcgaaatcttcttcaacaaatcc 995

                                                
Query: 500  tcttgatgtaagcgcgggggttcccatcctgatgcc 535
            ||| || ||||| || ||||||||||||||||||||
Sbjct: 994  tctcgacgtaagggctggggttcccatcctgatgcc 959
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  176 bits (89), Expect = 5e-41
 Identities = 131/145 (90%)
 Strand = Plus / Minus

                                                                            
Query: 262      cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 321
                |||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 30011320 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30011261

                                                                            
Query: 322      attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 381
                ||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 30011260 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30011201

                                         
Query: 382      aagtggcaacaaagtccttcagttt 406
                |||||||||||||||||||||||||
Sbjct: 30011200 aagtggcaacaaagtccttcagttt 30011176



 Score =  129 bits (65), Expect = 1e-26
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                            
Query: 415      ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 474
                |||||||||| |||||||||||||||||||||||||| | ||||||||| || |||||||
Sbjct: 30011026 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 30010967

                                                                 
Query: 475      tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 523
                | || |||||||||||||||||||||||||| || || || ||||||||
Sbjct: 30010966 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 30010918



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Minus

                                                                            
Query: 88       aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 147
                |||||||||||||| ||| || | ||||||| |||||||||||||| ||| |  ||||||
Sbjct: 30011757 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 30011699

                                               
Query: 148      aatgcttggattcc-ttttacataagatggc 177
                |||||  ||  ||| ||||||||||||||||
Sbjct: 30011698 aatgccaggggtcccttttacataagatggc 30011668
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score =  176 bits (89), Expect = 5e-41
 Identities = 131/145 (90%)
 Strand = Plus / Plus

                                                                         
Query: 262   cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 321
             |||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 96431 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 96490

                                                                         
Query: 322   attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 381
             ||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 96491 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 96550

                                      
Query: 382   aagtggcaacaaagtccttcagttt 406
             |||||||||||||||||||||||||
Sbjct: 96551 aagtggcaacaaagtccttcagttt 96575



 Score =  129 bits (65), Expect = 1e-26
 Identities = 98/109 (89%)
 Strand = Plus / Plus

                                                                         
Query: 415   ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 474
             |||||||||| |||||||||||||||||||||||||| | ||||||||| || |||||||
Sbjct: 96725 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 96784

                                                              
Query: 475   tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 523
             | || |||||||||||||||||||||||||| || || || ||||||||
Sbjct: 96785 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 96833



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Plus

                                                                         
Query: 88    aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 147
             |||||||||||||| ||| || | ||||||| |||||||||||||| ||| |  ||||||
Sbjct: 95994 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 96052

                                            
Query: 148   aatg-cttggattccttttacataagatggc 177
             |||| |  || | ||||||||||||||||||
Sbjct: 96053 aatgccaggggtcccttttacataagatggc 96083
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  176 bits (89), Expect = 5e-41
 Identities = 131/145 (90%)
 Strand = Plus / Minus

                                                                            
Query: 262      cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 321
                |||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 30102742 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30102683

                                                                            
Query: 322      attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 381
                ||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 30102682 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30102623

                                         
Query: 382      aagtggcaacaaagtccttcagttt 406
                |||||||||||||||||||||||||
Sbjct: 30102622 aagtggcaacaaagtccttcagttt 30102598



 Score =  129 bits (65), Expect = 1e-26
 Identities = 98/109 (89%)
 Strand = Plus / Minus

                                                                            
Query: 415      ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 474
                |||||||||| |||||||||||||||||||||||||| | ||||||||| || |||||||
Sbjct: 30102448 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 30102389

                                                                 
Query: 475      tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 523
                | || |||||||||||||||||||||||||| || || || ||||||||
Sbjct: 30102388 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 30102340



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 77/91 (84%), Gaps = 2/91 (2%)
 Strand = Plus / Minus

                                                                            
Query: 88       aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 147
                |||||||||||||| ||| || | ||||||| |||||||||||||| ||| |  ||||||
Sbjct: 30103179 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 30103121

                                               
Query: 148      aatg-cttggattccttttacataagatggc 177
                |||| |  || | ||||||||||||||||||
Sbjct: 30103120 aatgccaggggtcccttttacataagatggc 30103090
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>emb|Z25860.1|FPGHMT2 Flaveria pringlei mRNA for glycine hydroxymethyltransferase
          Length = 1779

 Score =  101 bits (51), Expect = 2e-18
 Identities = 81/91 (89%)
 Strand = Plus / Minus

                                                                        
Query: 265  agttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatatt 324
            |||| ||||| |||||||| |||||||| || |||||||||||||||||||| ||||| |
Sbjct: 1576 agtttttgtatttcatggtttctttctcaaacccgattgttgggaattgtttggcatact 1517

                                           
Query: 325  cctccacatcgtggcgaagctttgcaatttc 355
            ||||||| |||||||| ||||||| ||||||
Sbjct: 1516 cctccacgtcgtggcgtagctttgaaatttc 1486



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 45/53 (84%)
 Strand = Plus / Minus

                                                                 
Query: 483  tcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcc 535
            ||||| ||||||||||| || || || || || ||||||||||| ||||||||
Sbjct: 1361 tcctcttcaacaaatcccctagaagtgagagcaggggttcccattctgatgcc 1309
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>emb|Z25859.1|FPGHMT1 Flaveria pringlei mRNA for glycine hydroxymethyltransferase
          Length = 1746

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 90/104 (86%)
 Strand = Plus / Minus

                                                                        
Query: 262  cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 321
            ||||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||| || |
Sbjct: 1588 cttagtttttgtatttcatggtttctttctcaaatccgattgtcgggaattgtttcgcgt 1529

                                                        
Query: 322  attcctccacatcgtggcgaagctttgcaatttcagcttggatg 365
            |||||||||| || ||||| |||||||  ||||| | |||||||
Sbjct: 1528 attcctccacgtcatggcgtagctttgagatttctgattggatg 1485



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 467  ggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcccat 526
            |||||| || || |||||||| ||||||||||| || || || || || |||||||||||
Sbjct: 1386 ggcaactttagcaaagtcctcttcaacaaatcccctagaggtgagagcaggggttcccat 1327

                     
Query: 527  cctgatgcc 535
             ||||||||
Sbjct: 1326 tctgatgcc 1318
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>emb|Z25863.1|STGHMT S.tuberosum mRNA for glycine hydroxymethyltransferase
          Length = 1745

 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 82/96 (85%)
 Strand = Plus / Minus

                                                                        
Query: 262  cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 321
            ||||||| |||||||||||||| |||||||| || || ||||| ||||| || || ||||
Sbjct: 1563 cttagtttttgtacttcatggtttctttctcaaacccaattgtagggaactgcttagcat 1504

                                                
Query: 322  attcctccacatcgtggcgaagctttgcaatttcag 357
            | ||||||||||| || || || |||||||||||||
Sbjct: 1503 actcctccacatcatgacggagttttgcaatttcag 1468
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>gb|M87649.1|PEASHMTA Pisum sativum serine hydroxymethyltransferase mRNA, complete cds
          Length = 1803

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                      
Query: 478  cgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcc 535
            |||| ||||||||||||||||| ||||| |||||||| || |||||||||||||||||
Sbjct: 1363 cgaaatcctcctcaacaaatccccttgaagtaagcgcaggagttcccatcctgatgcc 1306



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 54/65 (83%)
 Strand = Plus / Minus

                                                                        
Query: 270  ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 329
            ||||||||||||||  |||| || || || || ||||| |||||||||||| | ||||| 
Sbjct: 1571 ttgtacttcatggttgctttttcaaaaccaatggttggaaattgttttgcaaactcctca 1512

                 
Query: 330  acatc 334
            |||||
Sbjct: 1511 acatc 1507
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>ref|NM_119954.2| Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1);
            glycine hydroxymethyltransferase AT4G37930 (SHM1) mRNA,
            complete cds
          Length = 1822

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 263  ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
            ||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1677 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1630
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>emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88
          Length = 198493

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                              
Query: 263    ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
              ||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 134324 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 134371
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>emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone  F20D10 (ESSA project)
          Length = 147215

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Plus

                                                             
Query: 263   ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
             ||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 19909 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 19956
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>emb|AJ271726.1|ATH271726 Arabidopsis thaliana mRNA for serine hydroxymethyl transferase (shm1
            gene)
          Length = 1797

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 263  ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
            ||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1653 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1606
to top
>gb|AY070726.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1775

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 263  ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
            ||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1614
to top
>gb|AY057645.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1716

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 263  ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
            ||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1607 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1560
to top
>gb|AF428388.1|AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1730

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 263  ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
            ||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1608 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1561
to top
>gb|AY054254.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
          Length = 1770

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 263  ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
            ||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1614
to top
>gb|BT006353.1| Arabidopsis thaliana At4g37930/F20D10_50 gene, complete cds
          Length = 1554

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 263  ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
            ||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1554 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1507
to top
>emb|BX828432.1|CNS0A3VV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH89ZH08 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1771

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 263  ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
            ||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1650 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1603
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>gb|AY089107.1| Arabidopsis thaliana clone 33799 mRNA, complete sequence
          Length = 1725

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 44/48 (91%)
 Strand = Plus / Minus

                                                            
Query: 263  ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 310
            ||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1616 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1569
to top
>dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557
          Length = 87695

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                        
Query: 270  ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 329
            ||||||||||| ||  | ||||| || || || ||||| || ||||| ||||| ||||| 
Sbjct: 7579 ttgtacttcattgttgccttctcaaaaccaatggttggaaactgtttcgcatactcctca 7520

                                   
Query: 330  acatcgtggcgaagctttgcaat 352
            |||||||||||||||||||||||
Sbjct: 7519 acatcgtggcgaagctttgcaat 7497
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>dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541,
             complete sequence
          Length = 110985

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 70/83 (84%)
 Strand = Plus / Minus

                                                                         
Query: 270   ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 329
             ||||||||||| ||  | ||||| || || || ||||| || ||||| ||||| ||||| 
Sbjct: 95182 ttgtacttcattgttgccttctcaaaaccaatggttggaaactgtttcgcatactcctca 95123

                                    
Query: 330   acatcgtggcgaagctttgcaat 352
             |||||||||||||||||||||||
Sbjct: 95122 acatcgtggcgaagctttgcaat 95100
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>ref|NM_180750.1| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780
            transcript variant AT5G26780.2 mRNA, complete cds
          Length = 1966

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 277  tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 325
            |||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
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>ref|NM_122560.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780
            transcript variant AT5G26780.3 mRNA, complete cds
          Length = 2072

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 277  tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 325
            |||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
to top
>ref|NM_180749.2| Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780
            transcript variant AT5G26780.1 mRNA, complete cds
          Length = 1962

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 277  tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 325
            |||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1644 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1596
to top
>gb|BT001097.1| Arabidopsis thaliana clone C104687 (D) putative glycine
            hydroxymethyltransferase (At5g26780) mRNA, complete cds
          Length = 1633

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 277  tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 325
            |||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
to top
>gb|AY035117.1| Arabidopsis thaliana putative glycine hydroxymethyltransferase
            (At5g26780) mRNA, complete cds
          Length = 1933

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 277  tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 325
            |||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1643 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1595
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>dbj|AK220785.1| Arabidopsis thaliana mRNA for glycine hydroxymethyltransferase
           -like protein, complete cds, clone: RAFL22-26-M08
          Length = 909

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 277 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 325
           |||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 552 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 504
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>gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
          Length = 110946

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                              
Query: 277   tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 325
             |||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 23145 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 23097
to top
>emb|BX830710.1|CNS09YQU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS16ZG06 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1960

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 277  tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 325
            |||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1639 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1591
to top
>gb|BT001113.1| Arabidopsis thaliana clone C104687 (D) putative glycine
            hydroxymethyltransferase (At5g26780) mRNA, complete cds
          Length = 1633

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                             
Query: 277  tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 325
            |||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
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>gb|AF416481.1|AF416481 Cicer arietinum hydroxymethyl transferase mRNA, partial cds
          Length = 284

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 50/59 (84%)
 Strand = Plus / Minus

                                                                      
Query: 270 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctc 328
           ||||||||||||||  |||| || || || || ||||| |||||||||||| |||||||
Sbjct: 68  ttgtacttcatggttgctttttcaaaaccaatggttggaaattgttttgcaaattcctc 10
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>gb|BT013569.1| Lycopersicon esculentum clone 132307R, mRNA sequence
          Length = 1923

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 52/62 (83%)
 Strand = Plus / Minus

                                                                        
Query: 267  ttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcc 326
            |||||||| ||||| || ||||||||||| || |  || ||||||||||| ||||| |||
Sbjct: 1592 ttcttgtatttcattgtttctttctcgaaaccaacagtagggaattgtttggcatagtcc 1533

              
Query: 327  tc 328
            ||
Sbjct: 1532 tc 1531
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>gb|AC129335.4| Mus musculus BAC clone RP23-109H7 from chromosome 1, complete sequence
          Length = 201274

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 424   ctttaaccttcaaagccaagtt 445
             ||||||||||||||||||||||
Sbjct: 32135 ctttaaccttcaaagccaagtt 32114
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>gb|AC164169.8| Mus musculus 6 BAC RP23-413M4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 209149

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 219    ttgtgcttcctgtttgcttcct 240
              ||||||||||||||||||||||
Sbjct: 194735 ttgtgcttcctgtttgcttcct 194756
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>gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete sequence
          Length = 113964

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 478   cgaagtcctcctcaacaaatcctcttgatgtaag 511
             |||| ||||||||||||||||| ||||| |||||
Sbjct: 58456 cgaaatcctcctcaacaaatccccttgaagtaag 58423
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>gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 187830

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 219   ttgtgcttcctgtttgcttcct 240
             ||||||||||||||||||||||
Sbjct: 54206 ttgtgcttcctgtttgcttcct 54227
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>gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, complete sequence
          Length = 202155

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 222   tgcttcctgtttgcttccttgctgt 246
             |||||||||||||||||| ||||||
Sbjct: 70853 tgcttcctgtttgcttccgtgctgt 70877
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>emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3,
              complete sequence
          Length = 122049

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 352    tttcagcttggatgttgctgt 372
              |||||||||||||||||||||
Sbjct: 104450 tttcagcttggatgttgctgt 104470
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>emb|AL031985.10|HS228H13 Human DNA sequence from clone RP1-228H13 on chromosome 1p34.1-35.3
              Contains the gene for a novel protein, a ribosomal protein
              L21 (RPL21), a ribosomal protein L10a (RPL10A) and the gene
              for a novel zinc finger protein, complete sequence
          Length = 139737

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 220    tgtgcttcctgtttgcttcct 240
              |||||||||||||||||||||
Sbjct: 105621 tgtgcttcctgtttgcttcct 105601
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>gb|AC012077.4|AC012077 Homo sapiens BAC clone RP11-524G14 from Y, complete sequence
          Length = 209287

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 352    tttcagcttggatgttgctgt 372
              |||||||||||||||||||||
Sbjct: 169390 tttcagcttggatgttgctgt 169410
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>gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, complete sequence
          Length = 256158

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   ctgtttgcttccttgctgtt 247
             ||||||||||||||||||||
Sbjct: 85155 ctgtttgcttccttgctgtt 85174
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>ref|XM_745127.1| Aspergillus fumigatus Af293 hypothetical protein (Afu1g04710)
           partial mRNA
          Length = 1263

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 234 gcttccttgctgttgaaacacagc 257
           |||||||||| |||||||||||||
Sbjct: 35  gcttccttgcagttgaaacacagc 12
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>emb|Z78199.1|CEK12F2 Caenorhabditis elegans Cosmid K12F2, complete sequence
          Length = 12999

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 337  ggcgaagctttgcaatttcagctt 360
            |||||||||| |||||||||||||
Sbjct: 7977 ggcgaagcttggcaatttcagctt 8000
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>gb|AC104871.8| Mus musculus chromosome 13, clone RP23-281C23, complete sequence
          Length = 165863

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   gaagctttgcaatttcagct 359
             ||||||||||||||||||||
Sbjct: 21826 gaagctttgcaatttcagct 21807
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>emb|X08067.1|CEMYO3 Caenorhabditis elegans myo-3 gene for myosin heavy chain 3 (MHC-A)
          Length = 11621

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 337  ggcgaagctttgcaatttcagctt 360
            |||||||||| |||||||||||||
Sbjct: 7886 ggcgaagcttggcaatttcagctt 7863
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>emb|BX323797.10| Zebrafish DNA sequence from clone DKEY-78A14 in linkage group 7,
             complete sequence
          Length = 101349

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 69    tcatatagcatatcagcgaaacat 92
             ||||||||||||||| ||||||||
Sbjct: 70623 tcatatagcatatcatcgaaacat 70600
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>gb|AC087847.6| Homo sapiens chromosome 8, clone RP11-353D5, complete sequence
          Length = 170722

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 267    ttcttgtacttcatggtctc 286
              ||||||||||||||||||||
Sbjct: 117303 ttcttgtacttcatggtctc 117322
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>gb|AF439728.1|AF439728 Zea mays serine hydroxymethyltransferase mRNA, partial cds
          Length = 1028

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 516  ggggttcccatcctgatgcc 535
            ||||||||||||||||||||
Sbjct: 1025 ggggttcccatcctgatgcc 1006
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>ref|NM_073664.3| Caenorhabditis elegans MYOsin heavy chain structural genes family
            member (myo-3) (myo-3) mRNA, complete cds
          Length = 6059

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 337  ggcgaagctttgcaatttcagctt 360
            |||||||||| |||||||||||||
Sbjct: 3565 ggcgaagcttggcaatttcagctt 3542
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>gb|AC155267.1| Mus musculus BAC clone RP23-248M19 from chromosome 13, complete
             sequence
          Length = 178290

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   gaagctttgcaatttcagct 359
             ||||||||||||||||||||
Sbjct: 83245 gaagctttgcaatttcagct 83226
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>dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12
          Length = 87434

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 104   tgcctgcaataagaaactat 123
             ||||||||||||||||||||
Sbjct: 54636 tgcctgcaataagaaactat 54617
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>gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_17, complete sequence
          Length = 211316

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 114    aagaaactattgacaaagtt 133
              ||||||||||||||||||||
Sbjct: 122669 aagaaactattgacaaagtt 122650
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>gb|AC154712.2| Mus musculus BAC clone RP24-359J22 from 16, complete sequence
          Length = 144031

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   agcacatggagaaatgtgtg 36
            ||||||||||||||||||||
Sbjct: 8811 agcacatggagaaatgtgtg 8792
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>dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-285P16, complete
              sequence
          Length = 171738

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 114    aagaaactattgacaaagtt 133
              ||||||||||||||||||||
Sbjct: 164989 aagaaactattgacaaagtt 165008
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>gb|BC084962.1| Xenopus laevis hypothetical LOC495440, mRNA (cDNA clone MGC:84058
           IMAGE:6948237), complete cds
          Length = 6578

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 410 acctgctgctgcagctttaa 429
           ||||||||||||||||||||
Sbjct: 240 acctgctgctgcagctttaa 221
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>gb|AC168066.4| Mus musculus BAC clone RP23-134F19 from chromosome 16, complete sequence
          Length = 198238

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 17     agcacatggagaaatgtgtg 36
              ||||||||||||||||||||
Sbjct: 171582 agcacatggagaaatgtgtg 171563
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>dbj|AB002815.1| Perilla frutescens mRNA for chalcone synthase, complete cds
          Length = 1449

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 401  cagtttggtacctgctgctg 420
            ||||||||||||||||||||
Sbjct: 1203 cagtttggtacctgctgctg 1222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,304,047
Number of Sequences: 3902068
Number of extensions: 5304047
Number of successful extensions: 129378
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 129144
Number of HSP's gapped (non-prelim): 216
length of query: 535
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 512
effective length of database: 17,143,297,704
effective search space: 8777368424448
effective search space used: 8777368424448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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