ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3b17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_948751.1| Theileria annulata strain Ankara hypothetical p... 40 1.1
2emb|AL139398.20| Human DNA sequence from clone RP11-528B10 on ch... 40 1.1
3gb|AC137713.8| Mus musculus chromosome 15, clone RP24-468P6, com... 38 4.4
4gb|AY505995.1| Pygathrix nemaeus clone DL microcephalin (Mcph1) ... 38 4.4
5gb|AC150254.5| Aedes aegypti, clone XX-88A20, complete sequence 38 4.4

>ref|XM_948751.1| Theileria annulata strain Ankara hypothetical protein (TA06460)
           partial mRNA
          Length = 2214

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 9   tttgaagagaaacgagaacaatat 32
           |||||||||||| |||||||||||
Sbjct: 813 tttgaagagaaatgagaacaatat 836



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>emb|AL139398.20| Human DNA sequence from clone RP11-528B10 on chromosome Xp11.21-11.23,
             complete sequence
          Length = 125999

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 4     agacatttgaagagaaacga 23
             ||||||||||||||||||||
Sbjct: 14623 agacatttgaagagaaacga 14604



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>gb|AC137713.8| Mus musculus chromosome 15, clone RP24-468P6, complete sequence
          Length = 155341

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 66     cactccttacatgcactca 84
              |||||||||||||||||||
Sbjct: 127406 cactccttacatgcactca 127424



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>gb|AY505995.1| Pygathrix nemaeus clone DL microcephalin (Mcph1) gene, exon 8 and
           partial cds
          Length = 1724

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 1   aggagacatttgaagagaa 19
           |||||||||||||||||||
Sbjct: 825 aggagacatttgaagagaa 843



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>gb|AC150254.5| Aedes aegypti, clone XX-88A20, complete sequence
          Length = 116482

 Score = 38.2 bits (19), Expect = 4.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 18    aaacgagaacaatatttgg 36
             |||||||||||||||||||
Sbjct: 24810 aaacgagaacaatatttgg 24828


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 588,883
Number of Sequences: 3902068
Number of extensions: 588883
Number of successful extensions: 38826
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38820
Number of HSP's gapped (non-prelim): 6
length of query: 99
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 78
effective length of database: 17,151,101,840
effective search space: 1337785943520
effective search space used: 1337785943520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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