ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3b12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PNO_CRYPV (Q968X7) Pyruvate dehydrogenase [NADP+] (EC 1.2.1.51) ... 32 0.99
2BCSC_PSEFL (P58937) Cellulose synthase operon protein C precursor 32 1.3
3OLIG3_MOUSE (Q6PFG8) Oligodendrocyte transcription factor 3 (Oli... 30 4.9
4SWM1_YEAST (Q12379) Anaphase promoting complex subunit SWM1 (Spo... 29 8.4

>PNO_CRYPV (Q968X7) Pyruvate dehydrogenase [NADP+] (EC 1.2.1.51) (Pyruvate:NADP+|
            oxidoreductase) (CpPNO)
          Length = 1934

 Score = 32.3 bits (72), Expect = 0.99
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = -1

Query: 386  SNFRKGSTVNATFYSACPRNDLLTEGTFALVEKLNGNN 273
            S   K +T   T   +C RND+L E T  L EKL+ NN
Sbjct: 1452 SEIPKATTFKVTILDSC-RNDILNESTGTLCEKLDENN 1488



to top

>BCSC_PSEFL (P58937) Cellulose synthase operon protein C precursor|
          Length = 1279

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = -1

Query: 494  PPDMLEKQIGLLP-GVMYDSTPRGVHFGDVSSDVAANSNFRKGSTVNATFYSACPRNDLL 318
            P   L+  +G+ P G +Y++   GV    VS    ANSNFR G+ +     S  P  D +
Sbjct: 1001 PDQGLKADVGVSPLGFLYNTLVGGV---SVSRPFEANSNFRYGANI-----SRRPVTDSV 1052

Query: 317  TEGTFALVEKLNGNNW 270
            T  +FA  E   GN W
Sbjct: 1053 T--SFAGSEDGAGNKW 1066



to top

>OLIG3_MOUSE (Q6PFG8) Oligodendrocyte transcription factor 3 (Oligo3)|
           (Oligodendrocyte-specific bHLH transcription factor 3)
           (Basic helix-loop-helix domain-containing class B
           protein 7)
          Length = 273

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 248 HHHHRQESSCYHLASQQVQRCPQLEGHSLDR 340
           HHHH QES    ++S Q     ++ G SL R
Sbjct: 29  HHHHHQESRLNSVSSTQGDMVQKMPGESLSR 59



to top

>SWM1_YEAST (Q12379) Anaphase promoting complex subunit SWM1 (Spore wall|
           maturation protein 1) (Anaphase promoting complex
           subunit 13)
          Length = 170

 Score = 29.3 bits (64), Expect = 8.4
 Identities = 33/150 (22%), Positives = 54/150 (36%), Gaps = 5/150 (3%)
 Frame = -1

Query: 482 LEKQIGLLPGVMYDSTPRGVHFGDVSSDVAANSNFRKGSTVNATFYSACPRNDLLTEGTF 303
           L  ++  +   M D+T      G    D   NSN R+ +                 +G  
Sbjct: 34  LPDEVANITMAMKDNTRTDAEEGRAPQDGERNSNVRESA-----------------QGKA 76

Query: 302 ALVEKLNGNN-WIPVYDDDDWSLQFKWSRPSKFSPRSFATLEWTIPEDAASGVYRLRHSG 126
            +  + N N  W   +D+DDW+L        +       T      + + +G    R+ G
Sbjct: 77  LMTSEQNSNRYWNSFHDEDDWNL----FNGMELESNGVVTFAGQAFDHSLNGGTNSRNDG 132

Query: 125 ASKP----LIGSIKHFTGTSRAFAVR*GIH 48
           A++P    + GSI     T  A+A   G H
Sbjct: 133 ANEPRKETITGSIFDRRITQLAYARNNGWH 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,149,118
Number of Sequences: 219361
Number of extensions: 1743267
Number of successful extensions: 4798
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4766
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4872342800
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top