ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3b12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192873.1| Oryza sativa (japonica cultivar-group), predic... 264 3e-67
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 264 3e-67
3dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic D... 264 3e-67
4dbj|AK099625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
5dbj|AK071952.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
6dbj|AK069738.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
7gb|BT024119.1| Zea mays clone EL01N0508D05 mRNA sequence 182 8e-43
8gb|AY110680.1| Zea mays CL24314_1 mRNA sequence 111 3e-21
9gb|AC122540.4| Mus musculus BAC clone RP24-555K13 from chromosom... 44 0.50
10gb|AC009522.11| Homo sapiens 12 BAC RP11-591N1 (Roswell Park Can... 44 0.50
11gb|AC133206.3| Mus musculus BAC clone RP23-110D10 from chromosom... 42 2.0
12emb|CR407585.14| Zebrafish DNA sequence from clone CH211-141O18 ... 42 2.0
13ref|XM_740418.1| Plasmodium chabaudi chabaudi eukaryotic transla... 42 2.0
14gb|AC152392.6| Mus musculus chromosome 1, clone RP23-300P10, com... 42 2.0
15emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chrom... 40 7.8
16emb|CT009558.5| M.truncatula DNA sequence from clone MTH2-72I11 ... 40 7.8
17emb|AL031430.2|HS406M12 Human DNA sequence from clone RP3-406M12... 40 7.8
18emb|AL022163.1|HS551E13 Human DNA sequence from clone RP4-551E13... 40 7.8
19emb|Z97342.2|ATFCA7 Arabidopsis thaliana DNA chromosome 4, ESSA ... 40 7.8
20emb|AL935260.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 7.8
21emb|AL161545.2|ATCHRIV45 Arabidopsis thaliana DNA chromosome 4, ... 40 7.8
22gb|AC122721.2| Homo sapiens chromosome 5 clone RP11-91I13, compl... 40 7.8
23gb|AC010117.6| Drosophila melanogaster 3L BAC RP98-21J2 (Roswell... 40 7.8
24gb|AC009840.7| Drosophila melanogaster 3L BAC RP98-2B14 (Roswell... 40 7.8
25gb|AC018719.4| Homo sapiens BAC clone RP11-573N21 from Xq23, com... 40 7.8
26gb|AC010596.8| Homo sapiens chromosome 5 clone CTC-483B24, compl... 40 7.8
27gb|AF180942.1|ATRPP5LE2 Arabidopsis thaliana RPP5 disease resist... 40 7.8
28gb|AC092882.3| Homo sapiens 12 BAC RP11-544L17 (Roswell Park Can... 40 7.8
29gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome 40 7.8
30gb|AE003591.4| Drosophila melanogaster chromosome 3L, section 72... 40 7.8
31gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete g... 40 7.8
32emb|BX294380.7| Zebrafish DNA sequence from clone DKEY-58N10 in ... 40 7.8 
>ref|NM_192873.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2457

 Score =  264 bits (133), Expect = 3e-67
 Identities = 375/455 (82%), Gaps = 3/455 (0%)
 Strand = Plus / Minus

                                                                        
Query: 121  gaggcaccagaatgcctcaacctatatacaccagaggcagcatcctcaggaatggtccat 180
            ||||||||| |||||||||| || || |||||||  ||||| || |||||||  ||||| 
Sbjct: 2294 gaggcaccaaaatgcctcaatctgtaaacaccagcagcagcgtcttcaggaactgtccac 2235

                                                                        
Query: 181  tccagagtcgcgaaacttcttgggctgaattttgaaggtctagaccacttgaattgcaat 240
            || ||||| || ||||||||||  || ||| |||  || || |||||||||||  |||||
Sbjct: 2234 tctagagttgcaaaacttcttgaactcaatcttgcgggccttgaccacttgaaacgcaat 2175

                                                                        
Query: 241  gaccaatcatcatcatcatagacaggaatccagtt---gttaccatttagcttctcaaca 297
            ||||||||||||||||| |||||||||| ||| ||   |||||||| ||||||||| || 
Sbjct: 2174 gaccaatcatcatcatcgtagacaggaacccaattattgttaccatctagcttctcgacg 2115

                                                                        
Query: 298  agtgcaaaggtgccctcagttagaaggtcattccttggacaggccgaatagaatgtagca 357
            ||||||||||| || || || ||||||||||||||||| || || ||||| |||||||||
Sbjct: 2114 agtgcaaaggtaccatccgtaagaaggtcattccttgggcatgctgaataaaatgtagca 2055

                                                                        
Query: 358  ttcacagtactgcccttcctgaagtttgagtttgctgcgacgtcggagctaacatcccca 417
            ||||||||||| |||||  ||||  |||||||  | |  || || ||| | |||||||||
Sbjct: 2054 ttcacagtactacccttgttgaatgttgagttaccaggaacatccgagttgacatcccca 1995

                                                                        
Query: 418  aagtgaacaccacgaggtgtagagtcatacataacacctggcagtagtccaatttgcttc 477
            || |  |||||| |||| || |||||| | | |||||| || ||||||||||||||||| 
Sbjct: 1994 aacttgacaccaagaggagttgagtcaaaaacaacaccaggaagtagtccaatttgcttg 1935

                                                                        
Query: 478  tccaacatgtcaggaggttggatgtttgtcgggacctctttgttttcaatcatagctgtg 537
            |||||||| |||||||||||||  ||||| ||||||||||||||| ||||||| ||  | 
Sbjct: 1934 tccaacatatcaggaggttggaaatttgttgggacctctttgtttgcaatcatggccata 1875

                                               
Query: 538  gcaagtttctgaaactcttgaatgtatgcactcaa 572
            |||||||||||||| ||||| || || ||||||||
Sbjct: 1874 gcaagtttctgaaattcttggatataggcactcaa 1840
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  264 bits (133), Expect = 3e-67
 Identities = 375/455 (82%), Gaps = 3/455 (0%)
 Strand = Plus / Plus

                                                                            
Query: 121      gaggcaccagaatgcctcaacctatatacaccagaggcagcatcctcaggaatggtccat 180
                ||||||||| |||||||||| || || |||||||  ||||| || |||||||  ||||| 
Sbjct: 24910018 gaggcaccaaaatgcctcaatctgtaaacaccagcagcagcgtcttcaggaactgtccac 24910077

                                                                            
Query: 181      tccagagtcgcgaaacttcttgggctgaattttgaaggtctagaccacttgaattgcaat 240
                || ||||| || ||||||||||  || ||| |||  || || |||||||||||  |||||
Sbjct: 24910078 tctagagttgcaaaacttcttgaactcaatcttgcgggccttgaccacttgaaacgcaat 24910137

                                                                            
Query: 241      gaccaatcatcatcatcatagacaggaatccagtt---gttaccatttagcttctcaaca 297
                ||||||||||||||||| |||||||||| ||| ||   |||||||| ||||||||| || 
Sbjct: 24910138 gaccaatcatcatcatcgtagacaggaacccaattattgttaccatctagcttctcgacg 24910197

                                                                            
Query: 298      agtgcaaaggtgccctcagttagaaggtcattccttggacaggccgaatagaatgtagca 357
                ||||||||||| || || || ||||||||||||||||| || || ||||| |||||||||
Sbjct: 24910198 agtgcaaaggtaccatccgtaagaaggtcattccttgggcatgctgaataaaatgtagca 24910257

                                                                            
Query: 358      ttcacagtactgcccttcctgaagtttgagtttgctgcgacgtcggagctaacatcccca 417
                ||||||||||| |||||  ||||  |||||||  | |  || || ||| | |||||||||
Sbjct: 24910258 ttcacagtactacccttgttgaatgttgagttaccaggaacatccgagttgacatcccca 24910317

                                                                            
Query: 418      aagtgaacaccacgaggtgtagagtcatacataacacctggcagtagtccaatttgcttc 477
                || |  |||||| |||| || |||||| | | |||||| || ||||||||||||||||| 
Sbjct: 24910318 aacttgacaccaagaggagttgagtcaaaaacaacaccaggaagtagtccaatttgcttg 24910377

                                                                            
Query: 478      tccaacatgtcaggaggttggatgtttgtcgggacctctttgttttcaatcatagctgtg 537
                |||||||| |||||||||||||  ||||| ||||||||||||||| ||||||| ||  | 
Sbjct: 24910378 tccaacatatcaggaggttggaaatttgttgggacctctttgtttgcaatcatggccata 24910437

                                                   
Query: 538      gcaagtttctgaaactcttgaatgtatgcactcaa 572
                |||||||||||||| ||||| || || ||||||||
Sbjct: 24910438 gcaagtttctgaaattcttggatataggcactcaa 24910472
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>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0501G01
          Length = 154561

 Score =  264 bits (133), Expect = 3e-67
 Identities = 375/455 (82%), Gaps = 3/455 (0%)
 Strand = Plus / Plus

                                                                          
Query: 121    gaggcaccagaatgcctcaacctatatacaccagaggcagcatcctcaggaatggtccat 180
              ||||||||| |||||||||| || || |||||||  ||||| || |||||||  ||||| 
Sbjct: 133138 gaggcaccaaaatgcctcaatctgtaaacaccagcagcagcgtcttcaggaactgtccac 133197

                                                                          
Query: 181    tccagagtcgcgaaacttcttgggctgaattttgaaggtctagaccacttgaattgcaat 240
              || ||||| || ||||||||||  || ||| |||  || || |||||||||||  |||||
Sbjct: 133198 tctagagttgcaaaacttcttgaactcaatcttgcgggccttgaccacttgaaacgcaat 133257

                                                                          
Query: 241    gaccaatcatcatcatcatagacaggaatccagtt---gttaccatttagcttctcaaca 297
              ||||||||||||||||| |||||||||| ||| ||   |||||||| ||||||||| || 
Sbjct: 133258 gaccaatcatcatcatcgtagacaggaacccaattattgttaccatctagcttctcgacg 133317

                                                                          
Query: 298    agtgcaaaggtgccctcagttagaaggtcattccttggacaggccgaatagaatgtagca 357
              ||||||||||| || || || ||||||||||||||||| || || ||||| |||||||||
Sbjct: 133318 agtgcaaaggtaccatccgtaagaaggtcattccttgggcatgctgaataaaatgtagca 133377

                                                                          
Query: 358    ttcacagtactgcccttcctgaagtttgagtttgctgcgacgtcggagctaacatcccca 417
              ||||||||||| |||||  ||||  |||||||  | |  || || ||| | |||||||||
Sbjct: 133378 ttcacagtactacccttgttgaatgttgagttaccaggaacatccgagttgacatcccca 133437

                                                                          
Query: 418    aagtgaacaccacgaggtgtagagtcatacataacacctggcagtagtccaatttgcttc 477
              || |  |||||| |||| || |||||| | | |||||| || ||||||||||||||||| 
Sbjct: 133438 aacttgacaccaagaggagttgagtcaaaaacaacaccaggaagtagtccaatttgcttg 133497

                                                                          
Query: 478    tccaacatgtcaggaggttggatgtttgtcgggacctctttgttttcaatcatagctgtg 537
              |||||||| |||||||||||||  ||||| ||||||||||||||| ||||||| ||  | 
Sbjct: 133498 tccaacatatcaggaggttggaaatttgttgggacctctttgtttgcaatcatggccata 133557

                                                 
Query: 538    gcaagtttctgaaactcttgaatgtatgcactcaa 572
              |||||||||||||| ||||| || || ||||||||
Sbjct: 133558 gcaagtttctgaaattcttggatataggcactcaa 133592
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>dbj|AK099625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013054N18, full
            insert sequence
          Length = 3038

 Score =  264 bits (133), Expect = 3e-67
 Identities = 375/455 (82%), Gaps = 3/455 (0%)
 Strand = Plus / Minus

                                                                        
Query: 121  gaggcaccagaatgcctcaacctatatacaccagaggcagcatcctcaggaatggtccat 180
            ||||||||| |||||||||| || || |||||||  ||||| || |||||||  ||||| 
Sbjct: 2682 gaggcaccaaaatgcctcaatctgtaaacaccagcagcagcgtcttcaggaactgtccac 2623

                                                                        
Query: 181  tccagagtcgcgaaacttcttgggctgaattttgaaggtctagaccacttgaattgcaat 240
            || ||||| || ||||||||||  || ||| |||  || || |||||||||||  |||||
Sbjct: 2622 tctagagttgcaaaacttcttgaactcaatcttgcgggccttgaccacttgaaacgcaat 2563

                                                                        
Query: 241  gaccaatcatcatcatcatagacaggaatccagtt---gttaccatttagcttctcaaca 297
            ||||||||||||||||| |||||||||| ||| ||   |||||||| ||||||||| || 
Sbjct: 2562 gaccaatcatcatcatcgtagacaggaacccaattattgttaccatctagcttctcgacg 2503

                                                                        
Query: 298  agtgcaaaggtgccctcagttagaaggtcattccttggacaggccgaatagaatgtagca 357
            ||||||||||| || || || ||||||||||||||||| || || ||||| |||||||||
Sbjct: 2502 agtgcaaaggtaccatccgtaagaaggtcattccttgggcatgctgaataaaatgtagca 2443

                                                                        
Query: 358  ttcacagtactgcccttcctgaagtttgagtttgctgcgacgtcggagctaacatcccca 417
            ||||||||||| |||||  ||||  |||||||  | |  || || ||| | |||||||||
Sbjct: 2442 ttcacagtactacccttgttgaatgttgagttaccaggaacatccgagttgacatcccca 2383

                                                                        
Query: 418  aagtgaacaccacgaggtgtagagtcatacataacacctggcagtagtccaatttgcttc 477
            || |  |||||| |||| || |||||| | | |||||| || ||||||||||||||||| 
Sbjct: 2382 aacttgacaccaagaggagttgagtcaaaaacaacaccaggaagtagtccaatttgcttg 2323

                                                                        
Query: 478  tccaacatgtcaggaggttggatgtttgtcgggacctctttgttttcaatcatagctgtg 537
            |||||||| |||||||||||||  ||||| ||||||||||||||| ||||||| ||  | 
Sbjct: 2322 tccaacatatcaggaggttggaaatttgttgggacctctttgtttgcaatcatggccata 2263

                                               
Query: 538  gcaagtttctgaaactcttgaatgtatgcactcaa 572
            |||||||||||||| ||||| || || ||||||||
Sbjct: 2262 gcaagtttctgaaattcttggatataggcactcaa 2228
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>dbj|AK071952.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013084M07, full
            insert sequence
          Length = 1495

 Score =  264 bits (133), Expect = 3e-67
 Identities = 375/455 (82%), Gaps = 3/455 (0%)
 Strand = Plus / Minus

                                                                        
Query: 121  gaggcaccagaatgcctcaacctatatacaccagaggcagcatcctcaggaatggtccat 180
            ||||||||| |||||||||| || || |||||||  ||||| || |||||||  ||||| 
Sbjct: 1155 gaggcaccaaaatgcctcaatctgtaaacaccagcagcagcgtcttcaggaactgtccac 1096

                                                                        
Query: 181  tccagagtcgcgaaacttcttgggctgaattttgaaggtctagaccacttgaattgcaat 240
            || ||||| || ||||||||||  || ||| |||  || || |||||||||||  |||||
Sbjct: 1095 tctagagttgcaaaacttcttgaactcaatcttgcgggccttgaccacttgaaacgcaat 1036

                                                                        
Query: 241  gaccaatcatcatcatcatagacaggaatccagtt---gttaccatttagcttctcaaca 297
            ||||||||||||||||| |||||||||| ||| ||   |||||||| ||||||||| || 
Sbjct: 1035 gaccaatcatcatcatcgtagacaggaacccaattattgttaccatctagcttctcgacg 976

                                                                        
Query: 298  agtgcaaaggtgccctcagttagaaggtcattccttggacaggccgaatagaatgtagca 357
            ||||||||||| || || || ||||||||||||||||| || || ||||| |||||||||
Sbjct: 975  agtgcaaaggtaccatccgtaagaaggtcattccttgggcatgctgaataaaatgtagca 916

                                                                        
Query: 358  ttcacagtactgcccttcctgaagtttgagtttgctgcgacgtcggagctaacatcccca 417
            ||||||||||| |||||  ||||  |||||||  | |  || || ||| | |||||||||
Sbjct: 915  ttcacagtactacccttgttgaatgttgagttaccaggaacatccgagttgacatcccca 856

                                                                        
Query: 418  aagtgaacaccacgaggtgtagagtcatacataacacctggcagtagtccaatttgcttc 477
            || |  |||||| |||| || |||||| | | |||||| || ||||||||||||||||| 
Sbjct: 855  aacttgacaccaagaggagttgagtcaaaaacaacaccaggaagtagtccaatttgcttg 796

                                                                        
Query: 478  tccaacatgtcaggaggttggatgtttgtcgggacctctttgttttcaatcatagctgtg 537
            |||||||| |||||||||||||  ||||| ||||||||||||||| ||||||| ||  | 
Sbjct: 795  tccaacatatcaggaggttggaaatttgttgggacctctttgtttgcaatcatggccata 736

                                               
Query: 538  gcaagtttctgaaactcttgaatgtatgcactcaa 572
            |||||||||||||| ||||| || || ||||||||
Sbjct: 735  gcaagtttctgaaattcttggatataggcactcaa 701
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>dbj|AK069738.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028C17, full
            insert sequence
          Length = 3071

 Score =  264 bits (133), Expect = 3e-67
 Identities = 375/455 (82%), Gaps = 3/455 (0%)
 Strand = Plus / Minus

                                                                        
Query: 121  gaggcaccagaatgcctcaacctatatacaccagaggcagcatcctcaggaatggtccat 180
            ||||||||| |||||||||| || || |||||||  ||||| || |||||||  ||||| 
Sbjct: 2788 gaggcaccaaaatgcctcaatctgtaaacaccagcagcagcgtcttcaggaactgtccac 2729

                                                                        
Query: 181  tccagagtcgcgaaacttcttgggctgaattttgaaggtctagaccacttgaattgcaat 240
            || ||||| || ||||||||||  || ||| |||  || || |||||||||||  |||||
Sbjct: 2728 tctagagttgcaaaacttcttgaactcaatcttgcgggccttgaccacttgaaacgcaat 2669

                                                                        
Query: 241  gaccaatcatcatcatcatagacaggaatccagtt---gttaccatttagcttctcaaca 297
            ||||||||||||||||| |||||||||| ||| ||   |||||||| ||||||||| || 
Sbjct: 2668 gaccaatcatcatcatcgtagacaggaacccaattattgttaccatctagcttctcgacg 2609

                                                                        
Query: 298  agtgcaaaggtgccctcagttagaaggtcattccttggacaggccgaatagaatgtagca 357
            ||||||||||| || || || ||||||||||||||||| || || ||||| |||||||||
Sbjct: 2608 agtgcaaaggtaccatccgtaagaaggtcattccttgggcatgctgaataaaatgtagca 2549

                                                                        
Query: 358  ttcacagtactgcccttcctgaagtttgagtttgctgcgacgtcggagctaacatcccca 417
            ||||||||||| |||||  ||||  |||||||  | |  || || ||| | |||||||||
Sbjct: 2548 ttcacagtactacccttgttgaatgttgagttaccaggaacatccgagttgacatcccca 2489

                                                                        
Query: 418  aagtgaacaccacgaggtgtagagtcatacataacacctggcagtagtccaatttgcttc 477
            || |  |||||| |||| || |||||| | | |||||| || ||||||||||||||||| 
Sbjct: 2488 aacttgacaccaagaggagttgagtcaaaaacaacaccaggaagtagtccaatttgcttg 2429

                                                                        
Query: 478  tccaacatgtcaggaggttggatgtttgtcgggacctctttgttttcaatcatagctgtg 537
            |||||||| |||||||||||||  ||||| ||||||||||||||| ||||||| ||  | 
Sbjct: 2428 tccaacatatcaggaggttggaaatttgttgggacctctttgtttgcaatcatggccata 2369

                                               
Query: 538  gcaagtttctgaaactcttgaatgtatgcactcaa 572
            |||||||||||||| ||||| || || ||||||||
Sbjct: 2368 gcaagtttctgaaattcttggatataggcactcaa 2334
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>gb|BT024119.1| Zea mays clone EL01N0508D05 mRNA sequence
          Length = 1982

 Score =  182 bits (92), Expect = 8e-43
 Identities = 412/518 (79%), Gaps = 3/518 (0%)
 Strand = Plus / Minus

                                                                        
Query: 58   taacgcactgcaaatgcccgagaagtaccagtaaaatgcttgattgaccctatcaatggc 117
            ||||||||||| || |||||||| || || |||||| | ||||| ||||| |||| ||| 
Sbjct: 1805 taacgcactgcgaacgcccgagaggtccctgtaaaagggttgatggacccaatcagtggt 1746

                                                                        
Query: 118  ttagaggcaccagaatgcctcaacctatatacaccagaggcagcatcctcaggaatggtc 177
            || ||||||||| |||||||||||||||| || || || |  || ||  |||||| ||||
Sbjct: 1745 ttggaggcaccaaaatgcctcaacctataaacgcccgacggggcgtctccaggaacggtc 1686

                                                                        
Query: 178  cattccagagtcgcgaaacttcttgggctgaattttgaaggtctagaccacttgaattgc 237
            |||||||| ||||| || ||||| ||||| |  || || ||||| |||||||||||  | 
Sbjct: 1685 cattccagcgtcgcaaagcttctcgggctcagcttcgacggtctcgaccacttgaagcgt 1626

                                                                        
Query: 238  aatgaccaatcatcatcatcatagacaggaatccagttgttac---catttagcttctca 294
            | |||||| || || || || ||| |||||| |||| |||| |   | |  ||||| |||
Sbjct: 1625 agtgaccagtcgtcgtcgtcgtaggcaggaacccagctgttgctgccgtccagcttttca 1566

                                                                        
Query: 295  acaagtgcaaaggtgccctcagttagaaggtcattccttggacaggccgaatagaatgta 354
            || || || || ||||| || || |||||||||||||| || || ||||| |||||||||
Sbjct: 1565 acgagcgcgaacgtgccgtccgtgagaaggtcattcctcgggcacgccgagtagaatgta 1506

                                                                        
Query: 355  gcattcacagtactgcccttcctgaagtttgagtttgctgcgacgtcggagctaacatcc 414
            || |||||   |||||||||||||||  ||||| |||| | |||||| ||||| ||||| 
Sbjct: 1505 gcgttcacgacactgcccttcctgaaagttgagcttgcggggacgtctgagctgacatct 1446

                                                                        
Query: 415  ccaaagtgaacaccacgaggtgtagagtcatacataacacctggcagtagtccaatttgc 474
            || || |  || ||| ||||||| |||||  ||| ||| ||||| || ||||| ||||||
Sbjct: 1445 ccgaactccaccccaggaggtgtggagtcgaacacaacgcctgggaggagtcctatttgc 1386

                                                                        
Query: 475  ttctccaacatgtcaggaggttggatgtttgtcgggacctctttgttttcaatcatagct 534
            || ||||||||||| || || || |  ||||||||||||||||||||| | | ||| |||
Sbjct: 1385 ttgtccaacatgtctgggggctgaaaatttgtcgggacctctttgtttgccaccatggct 1326

                                                  
Query: 535  gtggcaagtttctgaaactcttgaatgtatgcactcaa 572
            || ||||||||||| ||||| |||||||| || |||||
Sbjct: 1325 gtagcaagtttctggaactcctgaatgtaggcgctcaa 1288
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>gb|AY110680.1| Zea mays CL24314_1 mRNA sequence
          Length = 714

 Score =  111 bits (56), Expect = 3e-21
 Identities = 146/176 (82%)
 Strand = Plus / Minus

                                                                       
Query: 58  taacgcactgcaaatgcccgagaagtaccagtaaaatgcttgattgaccctatcaatggc 117
           ||||||||||| || |||||||| || || |||||||| ||||| ||||| |||| ||| 
Sbjct: 471 taacgcactgcgaacgcccgagaggtccccgtaaaatgtttgatggacccaatcagtggt 412

                                                                       
Query: 118 ttagaggcaccagaatgcctcaacctatatacaccagaggcagcatcctcaggaatggtc 177
           || ||||||||| |||||||||||||||| || || || |  || || ||||||| ||||
Sbjct: 411 ttggaggcaccaaaatgcctcaacctataaacgcccgacggggcgtcttcaggaacggtc 352

                                                                   
Query: 178 cattccagagtcgcgaaacttcttgggctgaattttgaaggtctagaccacttgaa 233
           |||||||| ||||| || ||||| ||||| |  || |||||||| |||||||||||
Sbjct: 351 cattccagcgtcgcaaagcttctcgggctcagcttcgaaggtctggaccacttgaa 296



 Score =  109 bits (55), Expect = 1e-20
 Identities = 166/203 (81%)
 Strand = Plus / Minus

                                                                       
Query: 286 agcttctcaacaagtgcaaaggtgccctcagttagaaggtcattccttggacaggccgaa 345
           ||||||||||| ||||| || ||||| || || |||||||||||||| || || ||||| 
Sbjct: 240 agcttctcaacgagtgcgaacgtgccgtccgtcagaaggtcattcctcgggcacgccgag 181

                                                                       
Query: 346 tagaatgtagcattcacagtactgcccttcctgaagtttgagtttgctgcgacgtcggag 405
           ||||||||||| |||||   |||||||||||||||  ||||| |||| | |||||| |||
Sbjct: 180 tagaatgtagcgttcacgacactgcccttcctgaaagttgagcttgcggggacgtctgag 121

                                                                       
Query: 406 ctaacatccccaaagtgaacaccacgaggtgtagagtcatacataacacctggcagtagt 465
           || ||||| || || |  || ||| ||||||| |||||  ||| ||| ||||| || |||
Sbjct: 120 ctgacatctccgaactccaccccaggaggtgtggagtcgaacacaacgcctgggaggagt 61

                                  
Query: 466 ccaatttgcttctccaacatgtc 488
           || |||||||| |||||||||||
Sbjct: 60  cctatttgcttgtccaacatgtc 38
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>gb|AC122540.4| Mus musculus BAC clone RP24-555K13 from chromosome 17, complete
             sequence
          Length = 149770

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 248   catcatcatcatagacaggaat 269
             ||||||||||||||||||||||
Sbjct: 80172 catcatcatcatagacaggaat 80151
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>gb|AC009522.11| Homo sapiens 12 BAC RP11-591N1 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 128666

 Score = 44.1 bits (22), Expect = 0.50
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 354  agcattcacagtactgcccttcctga 379
            ||||||||||| ||||||||||||||
Sbjct: 3888 agcattcacagaactgcccttcctga 3913
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>gb|AC133206.3| Mus musculus BAC clone RP23-110D10 from chromosome 1, complete sequence
          Length = 177383

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 252    atcatcatagacaggaatcca 272
              |||||||||||||||||||||
Sbjct: 156750 atcatcatagacaggaatcca 156770
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>emb|CR407585.14| Zebrafish DNA sequence from clone CH211-141O18 in linkage group 6,
            complete sequence
          Length = 164483

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 552  ctcttgaatgtatgcactcaa 572
            |||||||||||||||||||||
Sbjct: 2248 ctcttgaatgtatgcactcaa 2268
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>ref|XM_740418.1| Plasmodium chabaudi chabaudi eukaryotic translation initiation
           factor 3 subunit 8 (PC001059.02.0) partial mRNA
          Length = 2766

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 239 atgaccaatcatcatcatcat 259
           |||||||||||||||||||||
Sbjct: 670 atgaccaatcatcatcatcat 650
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>gb|AC152392.6| Mus musculus chromosome 1, clone RP23-300P10, complete sequence
          Length = 225267

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 252   atcatcatagacaggaatcca 272
             |||||||||||||||||||||
Sbjct: 12400 atcatcatagacaggaatcca 12420
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>emb|CR954246.1| Pseudoalteromonas haloplanktis str. TAC125 chromosome I, complete sequence
          Length = 3214944

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 518     tgttttcaatcatagctgtggcaagttt 545
               |||||| ||| |||||||||||||||||
Sbjct: 1456296 tgtttttaattatagctgtggcaagttt 1456323
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>emb|CT009558.5| M.truncatula DNA sequence from clone MTH2-72I11 on chromosome 3,
             complete sequence
          Length = 145085

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 245   aatcatcatcatcatagacaggaa 268
             ||||||||||||||||| ||||||
Sbjct: 85513 aatcatcatcatcataggcaggaa 85536
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>emb|AL031430.2|HS406M12 Human DNA sequence from clone RP3-406M12 on chromosome 1p34.1-34.3
             Contains a CpG island, complete sequence
          Length = 159281

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   aaacttcttgggctgaattt 212
             ||||||||||||||||||||
Sbjct: 23356 aaacttcttgggctgaattt 23337
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>emb|AL022163.1|HS551E13 Human DNA sequence from clone RP4-551E13 on chromosome Xp11.2-11.3
             Contains the 3' end of a novel gene (MGC51029), a farnesyl
             diphosphate synthase (farnesyl pyrophosphate synthetase
             dimethylallyltranstransferase geranyltranstransferase)
             (FDPS) pseudogene and a ubinuclein 1 (UBN1) pseudogene,
             complete sequence
          Length = 107418

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   ctgcccttcctgaagtttga 386
             ||||||||||||||||||||
Sbjct: 65172 ctgcccttcctgaagtttga 65191
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>emb|Z97342.2|ATFCA7 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 7
          Length = 201471

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   tgccctcagttagaaggtca 327
             ||||||||||||||||||||
Sbjct: 71026 tgccctcagttagaaggtca 71045
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>emb|AL935260.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 9/11
          Length = 298050

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 233    attgcaatgaccaatcatcatcat 256
              |||||||||||||||||| |||||
Sbjct: 246817 attgcaatgaccaatcattatcat 246794
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>emb|AL161545.2|ATCHRIV45 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 45
          Length = 199548

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 308   tgccctcagttagaaggtca 327
             ||||||||||||||||||||
Sbjct: 56855 tgccctcagttagaaggtca 56874
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>gb|AC122721.2| Homo sapiens chromosome 5 clone RP11-91I13, complete sequence
          Length = 137867

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 197    ttcttgggctgaattttgaa 216
              ||||||||||||||||||||
Sbjct: 108078 ttcttgggctgaattttgaa 108059
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>gb|AC010117.6| Drosophila melanogaster 3L BAC RP98-21J2 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 178965

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 486    gtcaggaggttggatgtttgtcgg 509
              ||||||||||||||| ||||||||
Sbjct: 154092 gtcaggaggttggatttttgtcgg 154069
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>gb|AC009840.7| Drosophila melanogaster 3L BAC RP98-2B14 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 194790

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 486    gtcaggaggttggatgtttgtcgg 509
              ||||||||||||||| ||||||||
Sbjct: 165818 gtcaggaggttggatttttgtcgg 165841
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>gb|AC018719.4| Homo sapiens BAC clone RP11-573N21 from Xq23, complete sequence
          Length = 168210

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    ctgcccttcctgaagtttga 386
              ||||||||||||||||||||
Sbjct: 167753 ctgcccttcctgaagtttga 167734
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>gb|AC010596.8| Homo sapiens chromosome 5 clone CTC-483B24, complete sequence
          Length = 165193

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   ttcttgggctgaattttgaa 216
             ||||||||||||||||||||
Sbjct: 24159 ttcttgggctgaattttgaa 24140
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>gb|AF180942.1|ATRPP5LE2 Arabidopsis thaliana RPP5 disease resistance locus, main contig
          Length = 91660

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 308   tgccctcagttagaaggtca 327
             ||||||||||||||||||||
Sbjct: 71902 tgccctcagttagaaggtca 71883
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>gb|AC092882.3| Homo sapiens 12 BAC RP11-544L17 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 49997

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 532   gctgtggcaagtttctgaaa 551
             ||||||||||||||||||||
Sbjct: 47274 gctgtggcaagtttctgaaa 47255
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>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome
          Length = 2616530

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 513     ctctttgttttcaatcatag 532
               ||||||||||||||||||||
Sbjct: 1902816 ctctttgttttcaatcatag 1902835
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>gb|AE003591.4| Drosophila melanogaster chromosome 3L, section 72 of 83 of the complete
              sequence
          Length = 301136

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 486    gtcaggaggttggatgtttgtcgg 509
              ||||||||||||||| ||||||||
Sbjct: 215110 gtcaggaggttggatttttgtcgg 215133
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>gb|AE015929.1| Staphylococcus epidermidis ATCC 12228, complete genome
          Length = 2499279

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 513     ctctttgttttcaatcatag 532
               ||||||||||||||||||||
Sbjct: 1907810 ctctttgttttcaatcatag 1907829
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>emb|BX294380.7| Zebrafish DNA sequence from clone DKEY-58N10 in linkage group 3,
             complete sequence
          Length = 212685

 Score = 40.1 bits (20), Expect = 7.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   atcatcatcatcatagacag 265
             ||||||||||||||||||||
Sbjct: 79320 atcatcatcatcatagacag 79301


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,844,910
Number of Sequences: 3902068
Number of extensions: 4844910
Number of successful extensions: 194532
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 194327
Number of HSP's gapped (non-prelim): 198
length of query: 575
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 552
effective length of database: 17,143,297,704
effective search space: 9463100332608
effective search space used: 9463100332608
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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