ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal3b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX548025.9| Zebrafish DNA sequence from clone DKEY-237J22 in... 42 1.8
2emb|BX247876.6| Zebrafish DNA sequence from clone CH211-271B14 i... 42 1.8
3gb|AC091809.4| Homo sapiens chromosome X clone XXbac-11940 map p... 40 7.1
4gb|AC110559.11| Mus musculus chromosome 7, clone RP23-253E12, co... 40 7.1
5gb|AY190956.1| Drosophila virilis clone DVIF01_06_H02 (D1438) ge... 40 7.1
6emb|AL591802.28| Human DNA sequence from clone RP11-330L22 on ch... 40 7.1
7emb|AL450309.14| Human DNA sequence from clone RP11-478H16 on ch... 40 7.1
8gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 geno... 40 7.1
9emb|CR382400.1| Plasmodium falciparum chromosome 6, complete seq... 40 7.1
10emb|BX908782.7| Zebrafish DNA sequence from clone DKEY-6E4 in li... 40 7.1
11gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 gen... 40 7.1
12gb|AC158315.9| Mus musculus chromosome 7, clone RP23-146D22, com... 40 7.1
13dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.1
14gb|AC012512.7| Homo sapiens BAC clone RP11-561O7 from 2, complet... 40 7.1
15emb|CR936503.1| Lactobacillus sakei strain 23K complete genome 40 7.1
16gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 7.1

>emb|BX548025.9| Zebrafish DNA sequence from clone DKEY-237J22 in linkage group 9,
             complete sequence
          Length = 134425

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 496   ctatttctgtttgcagaatgg 516
             |||||||||||||||||||||
Sbjct: 81823 ctatttctgtttgcagaatgg 81803



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>emb|BX247876.6| Zebrafish DNA sequence from clone CH211-271B14 in linkage group 5,
              complete sequence
          Length = 176246

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 261    tagtatgttgattgactgctgtgat 285
              |||||||||||||||||||| ||||
Sbjct: 176113 tagtatgttgattgactgctttgat 176089



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>gb|AC091809.4| Homo sapiens chromosome X clone XXbac-11940 map p11.4, complete
             sequence
          Length = 218733

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 132   agataatttgatttattgct 151
             ||||||||||||||||||||
Sbjct: 19526 agataatttgatttattgct 19507



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>gb|AC110559.11| Mus musculus chromosome 7, clone RP23-253E12, complete sequence
          Length = 192856

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 134    ataatttgatttattgctag 153
              ||||||||||||||||||||
Sbjct: 143351 ataatttgatttattgctag 143332



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>gb|AY190956.1| Drosophila virilis clone DVIF01_06_H02 (D1438) genomic sequence
          Length = 46427

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 497   tatttctgtttgcagaatgg 516
             ||||||||||||||||||||
Sbjct: 40339 tatttctgtttgcagaatgg 40320



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>emb|AL591802.28| Human DNA sequence from clone RP11-330L22 on chromosome X, complete
            sequence
          Length = 56935

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 132  agataatttgatttattgct 151
            ||||||||||||||||||||
Sbjct: 5485 agataatttgatttattgct 5466



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>emb|AL450309.14| Human DNA sequence from clone RP11-478H16 on chromosome 1 Contains the 5'
              end of the ERO1LB gene for ERO1-like beta (S. cerevisiae),
              an  FK506 binding protein 3, 25kDa (FKBP3) pseudogene, the
              5' UTR of a variant of the EDARADD gene for EDAR-associated
              death domain and three CpG islands, complete sequence
          Length = 166647

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 1      tattctgagctaagacaaga 20
              ||||||||||||||||||||
Sbjct: 162337 tattctgagctaagacaaga 162318



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>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence,
            complete sequence
          Length = 64582

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 135  taatttgatttattgctagc 154
            ||||||||||||||||||||
Sbjct: 6728 taatttgatttattgctagc 6709



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>emb|CR382400.1| Plasmodium falciparum chromosome 6, complete sequence; segment 3/5
          Length = 348034

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    gaagataatttgatttattg 149
              ||||||||||||||||||||
Sbjct: 317550 gaagataatttgatttattg 317531



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>emb|BX908782.7| Zebrafish DNA sequence from clone DKEY-6E4 in linkage group 2, complete
             sequence
          Length = 196309

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 103   tacttatttaccaattacca 122
             ||||||||||||||||||||
Sbjct: 47418 tacttatttaccaattacca 47437



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>gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 genomic sequence, complete
              sequence
          Length = 143961

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 135    taatttgatttattgctagc 154
              ||||||||||||||||||||
Sbjct: 143433 taatttgatttattgctagc 143414



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>gb|AC158315.9| Mus musculus chromosome 7, clone RP23-146D22, complete sequence
          Length = 212973

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    ataatttgatttattgctag 153
              ||||||||||||||||||||
Sbjct: 125777 ataatttgatttattgctag 125796



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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 135      taatttgatttattgctagc 154
                ||||||||||||||||||||
Sbjct: 22491010 taatttgatttattgctagc 22490991



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>gb|AC012512.7| Homo sapiens BAC clone RP11-561O7 from 2, complete sequence
          Length = 179460

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 42     tctgcccttgacacctcaaa 61
              ||||||||||||||||||||
Sbjct: 131157 tctgcccttgacacctcaaa 131176



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>emb|CR936503.1| Lactobacillus sakei strain 23K complete genome
          Length = 1884661

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 428     tttctcctatttcggcactcacag 451
               |||||| |||||||||||||||||
Sbjct: 1800158 tttctcttatttcggcactcacag 1800181



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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 135      taatttgatttattgctagc 154
                ||||||||||||||||||||
Sbjct: 22503478 taatttgatttattgctagc 22503459


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,086,670
Number of Sequences: 3902068
Number of extensions: 4086670
Number of successful extensions: 71593
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 71531
Number of HSP's gapped (non-prelim): 62
length of query: 524
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 501
effective length of database: 17,143,297,704
effective search space: 8588792149704
effective search space used: 8588792149704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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