ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2m10 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468165.1| Oryza sativa (japonica cultivar-group), mRNA Length = 570 Score = 252 bits (127), Expect = 2e-63 Identities = 216/246 (87%) Strand = Plus / Minus Query: 542 ttacttcacgttcattgctgcggccattttcctcaacctttgagatatttcagtgaagga 601 ||||||||| ||||||||||| ||||| ||||||||||||||||||||||| |||||||| Sbjct: 570 ttacttcacattcattgctgcagccatcttcctcaacctttgagatatttctgtgaagga 511 Query: 602 tggcctttgagctggttcaccagcccaactaccttccatcaatgatttccattcagggtc 661 ||| || | |||||||||| ||||||| |||||||| ||||||||||||||| || Sbjct: 510 tggtctatctgctggttcactggcccaacagttttccatcagtgatttccattcaggatc 451 Query: 662 gcaccaggaagggatctgaggacgaagagaattgttcacgatgcccccaataatttcagc 721 ||||| || |||||||||||||| || |||||||||||||||||||||||||| |||| Sbjct: 450 acaccatgaggggatctgaggacgtagggaattgttcacgatgcccccaataatagcagc 391 Query: 722 tgcacgcatatcagaatatggatcgtccccagtaagtagctnccacatcacaataccaaa 781 |||||||||||||||||||| || || |||||||| |||| |||||||||||||||||| Sbjct: 390 agcacgcatatcagaatatggttcttcgccagtaagcagctcccacatcacaataccaaa 331 Query: 782 tgagta 787 ||||| Sbjct: 330 cgagta 325
>dbj|AK067937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013122E21, full insert sequence Length = 2888 Score = 180 bits (91), Expect = 5e-42 Identities = 154/175 (88%) Strand = Plus / Minus Query: 541 tttacttcacgttcattgctgcggccattttcctcaacctttgagatatttcagtgaagg 600 |||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct: 2362 tttacttcacattcattgctgcagccatcttcctcaacctttgagatatttctgtgaagg 2303 Query: 601 atggcctttgagctggttcaccagcccaactaccttccatcaatgatttccattcagggt 660 |||| || | |||||||||| ||||||| |||||||| ||||||||||||||| | Sbjct: 2302 atggtctatctgctggttcactggcccaacagttttccatcagtgatttccattcaggat 2243 Query: 661 cgcaccaggaagggatctgaggacgaagagaattgttcacgatgcccccaataat 715 | ||||| || |||||||||||||| || |||||||||||||||||||||||||| Sbjct: 2242 cacaccatgaggggatctgaggacgtagggaattgttcacgatgcccccaataat 2188 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 5 aaatcttattcgtggactatgtacaatctgaataaggatatctct 49 |||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 2841 aaatcttattcgtgagctatttacaatctgaataaggatatctct 2797
>ref|XM_468164.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2888 Score = 168 bits (85), Expect = 2e-38 Identities = 148/169 (87%) Strand = Plus / Minus Query: 541 tttacttcacgttcattgctgcggccattttcctcaacctttgagatatttcagtgaagg 600 |||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct: 2362 tttacttcacattcattgctgcagccatcttcctcaacctttgagatatttctgtgaagg 2303 Query: 601 atggcctttgagctggttcaccagcccaactaccttccatcaatgatttccattcagggt 660 |||| || | |||||||||| ||||||| |||||||| ||||||||||||||| | Sbjct: 2302 atggtctatctgctggttcactggcccaacagttttccatcagtgatttccattcaggat 2243 Query: 661 cgcaccaggaagggatctgaggacgaagagaattgttcacgatgccccc 709 | ||||| || |||||||||||||| || |||||||||||||||||||| Sbjct: 2242 cacaccatgaggggatctgaggacgtagggaattgttcacgatgccccc 2194 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 5 aaatcttattcgtggactatgtacaatctgaataaggatatctct 49 |||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 2841 aaatcttattcgtgagctatttacaatctgaataaggatatctct 2797
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 168 bits (85), Expect = 2e-38 Identities = 148/169 (87%) Strand = Plus / Minus Query: 541 tttacttcacgttcattgctgcggccattttcctcaacctttgagatatttcagtgaagg 600 |||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct: 33410452 tttacttcacattcattgctgcagccatcttcctcaacctttgagatatttctgtgaagg 33410393 Query: 601 atggcctttgagctggttcaccagcccaactaccttccatcaatgatttccattcagggt 660 |||| || | |||||||||| ||||||| |||||||| ||||||||||||||| | Sbjct: 33410392 atggtctatctgctggttcactggcccaacagttttccatcagtgatttccattcaggat 33410333 Query: 661 cgcaccaggaagggatctgaggacgaagagaattgttcacgatgccccc 709 | ||||| || |||||||||||||| || |||||||||||||||||||| Sbjct: 33410332 cacaccatgaggggatctgaggacgtagggaattgttcacgatgccccc 33410284 Score = 89.7 bits (45), Expect = 1e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 708 ccaataatttcagctgcacgcatatcagaatatggatcgtccccagtaagtagctnccac 767 |||||||| |||| |||||||||||||||||||| || || |||||||| |||| |||| Sbjct: 33409676 ccaataatagcagcagcacgcatatcagaatatggttcttcgccagtaagcagctcccac 33409617 Query: 768 atcacaataccaaatgagta 787 |||||||||||||| ||||| Sbjct: 33409616 atcacaataccaaacgagta 33409597 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 5 aaatcttattcgtggactatgtacaatctgaataaggatatctct 49 |||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 33411021 aaatcttattcgtgagctatttacaatctgaataaggatatctct 33410977
>dbj|AP004057.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1316_E06 Length = 110197 Score = 168 bits (85), Expect = 2e-38 Identities = 148/169 (87%) Strand = Plus / Minus Query: 541 tttacttcacgttcattgctgcggccattttcctcaacctttgagatatttcagtgaagg 600 |||||||||| ||||||||||| ||||| ||||||||||||||||||||||| ||||||| Sbjct: 41071 tttacttcacattcattgctgcagccatcttcctcaacctttgagatatttctgtgaagg 41012 Query: 601 atggcctttgagctggttcaccagcccaactaccttccatcaatgatttccattcagggt 660 |||| || | |||||||||| ||||||| |||||||| ||||||||||||||| | Sbjct: 41011 atggtctatctgctggttcactggcccaacagttttccatcagtgatttccattcaggat 40952 Query: 661 cgcaccaggaagggatctgaggacgaagagaattgttcacgatgccccc 709 | ||||| || |||||||||||||| || |||||||||||||||||||| Sbjct: 40951 cacaccatgaggggatctgaggacgtagggaattgttcacgatgccccc 40903 Score = 89.7 bits (45), Expect = 1e-14 Identities = 71/80 (88%) Strand = Plus / Minus Query: 708 ccaataatttcagctgcacgcatatcagaatatggatcgtccccagtaagtagctnccac 767 |||||||| |||| |||||||||||||||||||| || || |||||||| |||| |||| Sbjct: 40295 ccaataatagcagcagcacgcatatcagaatatggttcttcgccagtaagcagctcccac 40236 Query: 768 atcacaataccaaatgagta 787 |||||||||||||| ||||| Sbjct: 40235 atcacaataccaaacgagta 40216 Score = 65.9 bits (33), Expect = 2e-07 Identities = 42/45 (93%) Strand = Plus / Minus Query: 5 aaatcttattcgtggactatgtacaatctgaataaggatatctct 49 |||||||||||||| |||| |||||||||||||||||||||||| Sbjct: 41640 aaatcttattcgtgagctatttacaatctgaataaggatatctct 41596
>gb|AC138131.16| Medicago truncatula clone mth2-21h11, complete sequence Length = 127696 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 764 ccacatcacaataccaaatga 784 ||||||||||||||||||||| Sbjct: 119917 ccacatcacaataccaaatga 119897
>emb|AL391666.5| Human DNA sequence from clone RP13-130D24 on chromosome Xq21.31-22.1 Contains a karyopherin (importin) beta 1 (KPNB1) pseudogene, complete sequence Length = 147080 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 agtttgttccatcttttctca 77 ||||||||||||||||||||| Sbjct: 4897 agtttgttccatcttttctca 4877
>gb|AC068308.12| Homo sapiens 3 BAC RP11-275H4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 154495 Score = 42.1 bits (21), Expect = 2.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 401 gccttcatgaaatctcatttgaata 425 |||||||| |||||||||||||||| Sbjct: 64277 gccttcattaaatctcatttgaata 64301
>dbj|AB168483.1| Macaca fascicularis testis cDNA clone: QtsA-12511, similar to human outer dense fiber of sperm tails 1 (ODF1), mRNA, RefSeq: NM_024410.2 Length = 1584 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 192 aacccaacagttcccatcatg 212 ||||||||||||||||||||| Sbjct: 605 aacccaacagttcccatcatg 585
>gb|AC130103.4| Rattus norvegicus BAC CH230-41L20 (Children's Hospital Oakland Research Institute Rat (BN/SsNHsd/MCW) BAC library) complete sequence Length = 224716 Score = 42.1 bits (21), Expect = 2.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 173 aaaatttatttacattacaaa 193 ||||||||||||||||||||| Sbjct: 73057 aaaatttatttacattacaaa 73077 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,676,704 Number of Sequences: 3902068 Number of extensions: 7676704 Number of successful extensions: 151129 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 151055 Number of HSP's gapped (non-prelim): 69 length of query: 789 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 766 effective length of database: 17,143,297,704 effective search space: 13131766041264 effective search space used: 13131766041264 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
