ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2m08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197752.1| Oryza sativa (japonica cultivar-group) unknown ... 161 3e-36
2gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 gen... 161 3e-36
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 161 3e-36
4dbj|AK103006.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
5dbj|AK071105.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
6dbj|AK060104.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 3e-36
7gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 161 3e-36
8dbj|AK101939.1| Oryza sativa (japonica cultivar-group) cDNA clon... 155 2e-34
9gb|AY107859.1| Zea mays PCO076568 mRNA sequence 121 3e-24
10emb|BX323061.6| Mouse DNA sequence from clone RP24-267L10 on chr... 44 0.51
11emb|BX511117.4| Mouse DNA sequence from clone RP23-143C1 on chro... 44 0.51
12gb|AC105750.2| Homo sapiens chromosome 3 clone RP11-776K4, compl... 44 0.51
13gb|AC055723.22| Homo sapiens 3 BAC RP11-201E8 (Roswell Park Canc... 42 2.0
14emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chr... 42 2.0
15gb|AC016620.7| Homo sapiens chromosome 5 clone CTD-2318A17, comp... 42 2.0
16gb|AC025176.5| Homo sapiens chromosome 5 clone CTD-2116N20, comp... 42 2.0
17dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
18gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Ca... 42 2.0
19dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
20emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chr... 42 2.0
21gb|AC154025.12| Mus musculus 6 BAC RP24-539J4 (Roswell Park Canc... 40 7.9
22gb|AC124779.4| Mus musculus BAC clone RP23-100O18 from chromosom... 40 7.9
23gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.9
24gb|AC096551.1| Homo sapiens BAC clone RP11-22K23 from 7, complet... 40 7.9
25gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genom... 40 7.9
26gb|AC131114.3| Mus musculus BAC clone RP24-212G16 from chromosom... 40 7.9
27gb|BC029891.1| Homo sapiens transcription factor EC, mRNA (cDNA ... 40 7.9
28gb|AC147405.7| Medicago truncatula clone mth2-146n5, complete se... 40 7.9
29emb|AL591115.6| Human DNA sequence from clone RP11-314E23 on chr... 40 7.9
30emb|AL157937.21| Human DNA sequence from clone RP11-408N14 on ch... 40 7.9
31emb|AL935254.1| Lactobacillus plantarum strain WCFS1 complete ge... 40 7.9
32ref|NM_001001125.1| Rattus norvegicus olfactory receptor 471 (pr... 40 7.9
33gb|AC163900.3| Mus musculus BAC clone RP23-151K15 from chromosom... 40 7.9
34gb|AC011905.4| Drosophila melanogaster 3L BAC RP98-27A3 (Roswell... 40 7.9
35gb|AC098848.7| Homo sapiens chromosome 18, clone RP11-839G9, com... 40 7.9
36gb|AC113815.6| Rattus norvegicus BAC CH230-221C20 (Children's H... 40 7.9
37gb|AC092484.1|AC092484 Homo sapiens clone RP11-114K22, complete ... 40 7.9
38dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
39gb|AC022471.8|AC022471 Genomic Sequence For Homo sapiens Clone 2... 40 7.9
40gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC cl... 40 7.9
41emb|AJ634062.2| Bacillus amyloliquefaciens dif gene cluster dire... 40 7.9
42gb|AE003475.4| Drosophila melanogaster chromosome 3L, section 9 ... 40 7.9
43emb|AL592188.60| Human DNA sequence from clone RP11-337M7 on chr... 40 7.9
44gb|AC139752.4| Mus musculus BAC clone RP24-258K1 from 12, comple... 40 7.9
45gb|AC131692.5| Mus musculus BAC clone RP23-391B20 from 19, compl... 40 7.9
46gb|AC090944.2| Homo sapiens chromosome 3 clone RP11-238A9 map 3p... 40 7.9
47gb|AC073597.20| Homo sapiens Xp BAC RP11-793P1 (Roswell Park Can... 40 7.9 
>ref|NM_197752.1| Oryza sativa (japonica cultivar-group) unknown protein
            (OSJNBb0089A17.7), mRNA
          Length = 1485

 Score =  161 bits (81), Expect = 3e-36
 Identities = 162/189 (85%)
 Strand = Plus / Minus

                                                                        
Query: 394  ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 453
            |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| 
Sbjct: 1122 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 1063

                                                                        
Query: 454  gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 513
            |||||| |||||||| ||||||||||| ||||| ||||||  |||||||| |||||||||
Sbjct: 1062 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 1003

                                                                        
Query: 514  aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 573
             ||||| || |  || ||||| |||||||||||||| ||||| |  |||||||| |||||
Sbjct: 1002 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 943

                     
Query: 574  agcaaggaa 582
             ||||||||
Sbjct: 942  ggcaaggaa 934



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/112 (83%), Gaps = 6/112 (5%)
 Strand = Plus / Minus

                                                                        
Query: 93   catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 152
            ||||||||| |||||| |||| ||||||||||||||||   |||| |||| |||| ||||
Sbjct: 1466 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 1410

                                                                
Query: 153  actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 201
            |||| |||| ||| |||||  | ||||||||||  ||| |||||||||||||
Sbjct: 1409 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 1358



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 314  tgctccgcctcaagagagcagctctcactacccacgct 351
            ||||| |||||||| ||||||||||| || ||||||||
Sbjct: 1220 tgctctgcctcaagggagcagctctcgctccccacgct 1183
to top
>gb|AC079890.13| Oryza sativa chromosome 10 BAC OSJNBb0089A17 genomic sequence, complete
             sequence
          Length = 132927

 Score =  161 bits (81), Expect = 3e-36
 Identities = 162/189 (85%)
 Strand = Plus / Plus

                                                                         
Query: 394   ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 453
             |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| 
Sbjct: 73872 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 73931

                                                                         
Query: 454   gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 513
             |||||| |||||||| ||||||||||| ||||| ||||||  |||||||| |||||||||
Sbjct: 73932 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 73991

                                                                         
Query: 514   aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 573
              ||||| || |  || ||||| |||||||||||||| ||||| |  |||||||| |||||
Sbjct: 73992 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 74051

                      
Query: 574   agcaaggaa 582
              ||||||||
Sbjct: 74052 ggcaaggaa 74060



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/112 (83%), Gaps = 6/112 (5%)
 Strand = Plus / Plus

                                                                         
Query: 93    catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 152
             ||||||||| |||||| |||| ||||||||||||||||   |||| |||| |||| ||||
Sbjct: 73528 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 73584

                                                                 
Query: 153   actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 201
             |||| |||| ||| |||||  | ||||||||||  ||| |||||||||||||
Sbjct: 73585 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 73636



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 314   tgctccgcctcaagagagcagctctcactacccacgct 351
             ||||| |||||||| ||||||||||| || ||||||||
Sbjct: 73774 tgctctgcctcaagggagcagctctcgctccccacgct 73811
to top
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  161 bits (81), Expect = 3e-36
 Identities = 162/189 (85%)
 Strand = Plus / Plus

                                                                            
Query: 394      ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 453
                |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| 
Sbjct: 21641968 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 21642027

                                                                            
Query: 454      gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 513
                |||||| |||||||| ||||||||||| ||||| ||||||  |||||||| |||||||||
Sbjct: 21642028 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 21642087

                                                                            
Query: 514      aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 573
                 ||||| || |  || ||||| |||||||||||||| ||||| |  |||||||| |||||
Sbjct: 21642088 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 21642147

                         
Query: 574      agcaaggaa 582
                 ||||||||
Sbjct: 21642148 ggcaaggaa 21642156



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/112 (83%), Gaps = 6/112 (5%)
 Strand = Plus / Plus

                                                                            
Query: 93       catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 152
                ||||||||| |||||| |||| ||||||||||||||||   |||| |||| |||| ||||
Sbjct: 21641624 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 21641680

                                                                    
Query: 153      actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 201
                |||| |||| ||| |||||  | ||||||||||  ||| |||||||||||||
Sbjct: 21641681 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 21641732



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 314      tgctccgcctcaagagagcagctctcactacccacgct 351
                ||||| |||||||| ||||||||||| || ||||||||
Sbjct: 21641870 tgctctgcctcaagggagcagctctcgctccccacgct 21641907
to top
>dbj|AK103006.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033116I08, full
            insert sequence
          Length = 1420

 Score =  161 bits (81), Expect = 3e-36
 Identities = 162/189 (85%)
 Strand = Plus / Minus

                                                                        
Query: 394  ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 453
            |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| 
Sbjct: 1181 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 1122

                                                                        
Query: 454  gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 513
            |||||| |||||||| ||||||||||| ||||| ||||||  |||||||| |||||||||
Sbjct: 1121 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 1062

                                                                        
Query: 514  aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 573
             ||||| || |  || ||||| |||||||||||||| ||||| |  |||||||| |||||
Sbjct: 1061 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 1002

                     
Query: 574  agcaaggaa 582
             ||||||||
Sbjct: 1001 ggcaaggaa 993



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 314  tgctccgcctcaagagagcagctctcactacccacgct 351
            ||||| |||||||| ||||||||||| || ||||||||
Sbjct: 1279 tgctctgcctcaagggagcagctctcgctccccacgct 1242
to top
>dbj|AK071105.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077B12, full
           insert sequence
          Length = 1212

 Score =  161 bits (81), Expect = 3e-36
 Identities = 162/189 (85%)
 Strand = Plus / Minus

                                                                       
Query: 394 ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 453
           |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| 
Sbjct: 856 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 797

                                                                       
Query: 454 gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 513
           |||||| |||||||| ||||||||||| ||||| ||||||  |||||||| |||||||||
Sbjct: 796 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 737

                                                                       
Query: 514 aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 573
            ||||| || |  || ||||| |||||||||||||| ||||| |  |||||||| |||||
Sbjct: 736 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 677

                    
Query: 574 agcaaggaa 582
            ||||||||
Sbjct: 676 ggcaaggaa 668



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/112 (83%), Gaps = 6/112 (5%)
 Strand = Plus / Minus

                                                                        
Query: 93   catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 152
            ||||||||| |||||| |||| ||||||||||||||||   |||| |||| |||| ||||
Sbjct: 1200 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 1144

                                                                
Query: 153  actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 201
            |||| |||| ||| |||||  | ||||||||||  ||| |||||||||||||
Sbjct: 1143 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 1092



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 314 tgctccgcctcaagagagcagctctcactacccacgct 351
           ||||| |||||||| ||||||||||| || ||||||||
Sbjct: 954 tgctctgcctcaagggagcagctctcgctccccacgct 917
to top
>dbj|AK060104.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-B05, full
           insert sequence
          Length = 1034

 Score =  161 bits (81), Expect = 3e-36
 Identities = 162/189 (85%)
 Strand = Plus / Minus

                                                                       
Query: 394 ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 453
           |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| 
Sbjct: 670 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 611

                                                                       
Query: 454 gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 513
           |||||| |||||||| ||||||||||| ||||| ||||||  |||||||| |||||||||
Sbjct: 610 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 551

                                                                       
Query: 514 aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 573
            ||||| || |  || ||||| |||||||||||||| ||||| |  |||||||| |||||
Sbjct: 550 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 491

                    
Query: 574 agcaaggaa 582
            ||||||||
Sbjct: 490 ggcaaggaa 482



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/112 (83%), Gaps = 6/112 (5%)
 Strand = Plus / Minus

                                                                        
Query: 93   catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 152
            ||||||||| |||||| |||| ||||||||||||||||   |||| |||| |||| ||||
Sbjct: 1014 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 958

                                                                
Query: 153  actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 201
            |||| |||| ||| |||||  | ||||||||||  ||| |||||||||||||
Sbjct: 957  actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 906



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 314 tgctccgcctcaagagagcagctctcactacccacgct 351
           ||||| |||||||| ||||||||||| || ||||||||
Sbjct: 768 tgctctgcctcaagggagcagctctcgctccccacgct 731
to top
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  161 bits (81), Expect = 3e-36
 Identities = 162/189 (85%)
 Strand = Plus / Plus

                                                                            
Query: 394      ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 453
                |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| 
Sbjct: 21653631 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 21653690

                                                                            
Query: 454      gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 513
                |||||| |||||||| ||||||||||| ||||| ||||||  |||||||| |||||||||
Sbjct: 21653691 gcttatctcccacaagccactgcccacgttaacggccaaggtatccgcatcatacccttc 21653750

                                                                            
Query: 514      aaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgagt 573
                 ||||| || |  || ||||| |||||||||||||| ||||| |  |||||||| |||||
Sbjct: 21653751 gaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgagt 21653810

                         
Query: 574      agcaaggaa 582
                 ||||||||
Sbjct: 21653811 ggcaaggaa 21653819



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/112 (83%), Gaps = 6/112 (5%)
 Strand = Plus / Plus

                                                                            
Query: 93       catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 152
                ||||||||| |||||| |||| ||||||||||||||||   |||| |||| |||| ||||
Sbjct: 21653287 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 21653343

                                                                    
Query: 153      actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 201
                |||| |||| ||| |||||  | ||||||||||  ||| |||||||||||||
Sbjct: 21653344 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 21653395



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                      
Query: 314      tgctccgcctcaagagagcagctctcactacccacgct 351
                ||||| |||||||| ||||||||||| || ||||||||
Sbjct: 21653533 tgctctgcctcaagggagcagctctcgctccccacgct 21653570
to top
>dbj|AK101939.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074H15, full
            insert sequence
          Length = 1631

 Score =  155 bits (78), Expect = 2e-34
 Identities = 163/190 (85%), Gaps = 1/190 (0%)
 Strand = Plus / Minus

                                                                        
Query: 394  ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 453
            |||||||||||| ||||||||||| || |||||||| |||||||| || |||||||||| 
Sbjct: 1254 ccacaggtatgagaaccctgcaaaggccgcctggctcgcaaactgcacgcggtatactag 1195

                                                                        
Query: 454  gcttatttcccacaaa-ccactgcccacattaactgccaagccatccgcattataccctt 512
            |||||| ||||||||| ||||||||||| ||||| ||||||  |||||||| ||||||||
Sbjct: 1194 gcttatctcccacaaagccactgcccacgttaacggccaaggtatccgcatcataccctt 1135

                                                                        
Query: 513  caaggtctgactcagagaccatcacgaatgtcttctcatcaaaagtgatgaggttccgag 572
            | ||||| || |  || ||||| |||||||||||||| ||||| |  |||||||| ||||
Sbjct: 1134 cgaggtccgatttggaaaccatgacgaatgtcttctcgtcaaatgcaatgaggttgcgag 1075

                      
Query: 573  tagcaaggaa 582
            | ||||||||
Sbjct: 1074 tggcaaggaa 1065



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 94/112 (83%), Gaps = 6/112 (5%)
 Strand = Plus / Minus

                                                                        
Query: 93   catttacctttgtacacgtagcagtcaacttattacagcacatatatacagacccgagca 152
            ||||||||| |||||| |||| ||||||||||||||||   |||| |||| |||| ||||
Sbjct: 1598 catttacctctgtacatgtagaagtcaacttattacag---atatgtacatacccaagca 1542

                                                                
Query: 153  actgaactccttggttgct--gcagactggagtcgagg-cttcacattgcat 201
            |||| |||| ||| |||||  | ||||||||||  ||| |||||||||||||
Sbjct: 1541 actgcactctttgcttgctgaggagactggagttaaggacttcacattgcat 1490



 Score = 44.1 bits (22), Expect = 0.51
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 314  tgctccgcctcaagagagcagctctcactacccacgct 351
            ||||| |||||||| ||||||||||| || ||||||||
Sbjct: 1352 tgctctgcctcaagggagcagctctcgctccccacgct 1315
to top
>gb|AY107859.1| Zea mays PCO076568 mRNA sequence
          Length = 1538

 Score =  121 bits (61), Expect = 3e-24
 Identities = 127/149 (85%)
 Strand = Plus / Minus

                                                                        
Query: 394  ccacaggtatgaaaaccctgcaaatgctgcctggctggcaaactgaacacggtatactaa 453
            |||||| || |||||||| |||||||||| || ||| |||||||| ||||||||||  ||
Sbjct: 1188 ccacagatacgaaaacccagcaaatgctgtcttgctcgcaaactggacacggtatatcaa 1129

                                                                        
Query: 454  gcttatttcccacaaaccactgcccacattaactgccaagccatccgcattatacccttc 513
            |||||| |||||||| | |||||||| ||||| |||||   |||| ||||||||||||||
Sbjct: 1128 gcttatctcccacaatctactgcccatattaagtgccagtgcatctgcattatacccttc 1069

                                         
Query: 514  aaggtctgactcagagaccatcacgaatg 542
             |||||||| || ||||||||||| ||||
Sbjct: 1068 gaggtctgattctgagaccatcacaaatg 1040



 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 67/74 (90%)
 Strand = Plus / Minus

                                                                        
Query: 104  gtacacgtagcagtcaacttattacagcacatatatacagacccgagcaactgaactcct 163
            ||||||||||||||||||||||||||   |||||||||| ||||||||||||  |||| |
Sbjct: 1457 gtacacgtagcagtcaacttattacatgtcatatatacaaacccgagcaacttcactctt 1398

                          
Query: 164  tggttgctgcagac 177
            ||||||||||||||
Sbjct: 1397 tggttgctgcagac 1384



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 266  ggattaaccacgacaccttgaagtagaca 294
            |||||||||||||||||||| ||||||||
Sbjct: 1310 ggattaaccacgacaccttgcagtagaca 1282
to top
>emb|BX323061.6| Mouse DNA sequence from clone RP24-267L10 on chromosome 11 Contains
            part of a novel gene and a CpG island, complete sequence
          Length = 137694

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 44   tacatatatacatattcagcaa 65
            ||||||||||||||||||||||
Sbjct: 1882 tacatatatacatattcagcaa 1861
to top
>emb|BX511117.4| Mouse DNA sequence from clone RP23-143C1 on chromosome 11 Contains a
             basic transcription factor 3 (Btf3) pseudogene, complete
             sequence
          Length = 72981

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 44    tacatatatacatattcagcaa 65
             ||||||||||||||||||||||
Sbjct: 72863 tacatatatacatattcagcaa 72842
to top
>gb|AC105750.2| Homo sapiens chromosome 3 clone RP11-776K4, complete sequence
          Length = 166478

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 35    agaaagtagtacatatatacat 56
             ||||||||||||||||||||||
Sbjct: 27097 agaaagtagtacatatatacat 27118
to top
>gb|AC055723.22| Homo sapiens 3 BAC RP11-201E8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166787

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 42    agtacatatatacatattcag 62
             |||||||||||||||||||||
Sbjct: 51390 agtacatatatacatattcag 51410
to top
>emb|CR382287.6| Human DNA sequence from clone bP-21216K13 on chromosome 21, complete
              sequence
          Length = 278310

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 399    ggtatgaaaaccctgcaaatg 419
              |||||||||||||||||||||
Sbjct: 123931 ggtatgaaaaccctgcaaatg 123911
to top
>gb|AC016620.7| Homo sapiens chromosome 5 clone CTD-2318A17, complete sequence
          Length = 129856

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                           
Query: 50     tatacata-ttcagcaagtaaggttagca 77
              |||||||| ||||||||||||||||||||
Sbjct: 105030 tatacatacttcagcaagtaaggttagca 105002
to top
>gb|AC025176.5| Homo sapiens chromosome 5 clone CTD-2116N20, complete sequence
          Length = 104972

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 50    tatacata-ttcagcaagtaaggttagca 77
             |||||||| ||||||||||||||||||||
Sbjct: 18149 tatacatacttcagcaagtaaggttagca 18121
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 37       aaagtagtacatatatacata 57
                |||||||||||||||||||||
Sbjct: 26224211 aaagtagtacatatatacata 26224231
to top
>gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 204425

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 360   gtgcctccttgtccttctggg 380
             |||||||||||||||||||||
Sbjct: 32408 gtgcctccttgtccttctggg 32388
to top
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E12
          Length = 152448

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 37     aaagtagtacatatatacata 57
              |||||||||||||||||||||
Sbjct: 116069 aaagtagtacatatatacata 116089
to top
>emb|AL162252.17| Human DNA sequence from clone RP11-55J24 on chromosome 9, complete
              sequence
          Length = 176845

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 399    ggtatgaaaaccctgcaaatg 419
              |||||||||||||||||||||
Sbjct: 112792 ggtatgaaaaccctgcaaatg 112772
to top
>gb|AC154025.12| Mus musculus 6 BAC RP24-539J4 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 165821

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 228   tgcaagacaaaaagacaccg 247
             ||||||||||||||||||||
Sbjct: 74791 tgcaagacaaaaagacaccg 74810
to top
>gb|AC124779.4| Mus musculus BAC clone RP23-100O18 from chromosome 6, complete sequence
          Length = 197482

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 44     tacatatatacatattcagc 63
              ||||||||||||||||||||
Sbjct: 141516 tacatatatacatattcagc 141497
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 32       gcaagaaagtagtacatatataca 55
                |||||||| |||||||||||||||
Sbjct: 20603190 gcaagaaactagtacatatataca 20603213
to top
>gb|AC096551.1| Homo sapiens BAC clone RP11-22K23 from 7, complete sequence
          Length = 149656

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 44     tacatatatacatattcagc 63
              ||||||||||||||||||||
Sbjct: 126834 tacatatatacatattcagc 126853
to top
>gb|AC093312.7| Oryza sativa chromosome 3 BAC OSJNBa0095N06 genomic sequence, complete
             sequence
          Length = 152417

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 32    gcaagaaagtagtacatatataca 55
             |||||||| |||||||||||||||
Sbjct: 16947 gcaagaaactagtacatatataca 16970
to top
>gb|AC131114.3| Mus musculus BAC clone RP24-212G16 from chromosome 19, complete
             sequence
          Length = 160122

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 351   tctcggcaagtgcctccttgtccttctg 378
             |||| ||||||| |||||||||||||||
Sbjct: 43143 tctcagcaagtggctccttgtccttctg 43116
to top
>gb|BC029891.1| Homo sapiens transcription factor EC, mRNA (cDNA clone MGC:34383
           IMAGE:5179088), complete cds
          Length = 2738

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 44  tacatatatacatattcagc 63
           ||||||||||||||||||||
Sbjct: 977 tacatatatacatattcagc 958
to top
>gb|AC147405.7| Medicago truncatula clone mth2-146n5, complete sequence
          Length = 147062

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     gaaatttgaaatattgctaa 21
             ||||||||||||||||||||
Sbjct: 22253 gaaatttgaaatattgctaa 22234
to top
>emb|AL591115.6| Human DNA sequence from clone RP11-314E23 on chromosome 6 Contains a
             novel gene, complete sequence
          Length = 91763

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   tcttctcatcaaaagtgatg 562
             ||||||||||||||||||||
Sbjct: 33001 tcttctcatcaaaagtgatg 32982
to top
>emb|AL157937.21| Human DNA sequence from clone RP11-408N14 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 153783

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    agaaagtagtacatatatacatat 58
             |||| |||||||||||||||||||
Sbjct: 24898 agaatgtagtacatatatacatat 24921
to top
>emb|AL935254.1| Lactobacillus plantarum strain WCFS1 complete genome; segment 3/11
          Length = 317050

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 293    cagtggtgaccgttcgcaggctgc 316
              ||||||||||||||| ||||||||
Sbjct: 138704 cagtggtgaccgttcccaggctgc 138681
to top
>ref|NM_001001125.1| Rattus norvegicus olfactory receptor 471 (predicted)
           (Olr471_predicted), mRNA
          Length = 939

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 30  tggcaagaaagtagtacata 49
           ||||||||||||||||||||
Sbjct: 193 tggcaagaaagtagtacata 174
to top
>gb|AC163900.3| Mus musculus BAC clone RP23-151K15 from chromosome 12, complete
             sequence
          Length = 200606

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   tccttggttgctgcagactg 179
             ||||||||||||||||||||
Sbjct: 81647 tccttggttgctgcagactg 81666
to top
>gb|AC011905.4| Drosophila melanogaster 3L BAC RP98-27A3 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 192681

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    tacatatatacatattcagc 63
             ||||||||||||||||||||
Sbjct: 67211 tacatatatacatattcagc 67230
to top
>gb|AC098848.7| Homo sapiens chromosome 18, clone RP11-839G9, complete sequence
          Length = 189315

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 35    agaaagtagtacatatatacatat 58
             |||||||| |||||||||||||||
Sbjct: 60597 agaaagtaatacatatatacatat 60620
to top
>gb|AC113815.6| Rattus norvegicus  BAC CH230-221C20 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 229621

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 30     tggcaagaaagtagtacata 49
              ||||||||||||||||||||
Sbjct: 198419 tggcaagaaagtagtacata 198400
to top
>gb|AC092484.1|AC092484 Homo sapiens clone RP11-114K22, complete sequence
          Length = 73900

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   tgcatgccctcttcatatgt 216
             ||||||||||||||||||||
Sbjct: 57684 tgcatgccctcttcatatgt 57665
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 32       gcaagaaagtagtacatatataca 55
                |||||||| |||||||||||||||
Sbjct: 20596219 gcaagaaactagtacatatataca 20596242
to top
>gb|AC022471.8|AC022471 Genomic Sequence For Homo sapiens Clone 202M16 From Chromosome VI,
            complete sequence
          Length = 92144

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 35   agaaagtagtacatatatacatat 58
            |||| |||||||||||||||||||
Sbjct: 4694 agaatgtagtacatatatacatat 4717
to top
>gb|AC157977.1| Genomic sequence for Zea mays chromosome 8 BAC clone ZMMBBb0284N04,
             complete sequence
          Length = 107631

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 39    agtagtacatatatacatat 58
             ||||||||||||||||||||
Sbjct: 35974 agtagtacatatatacatat 35993
to top
>emb|AJ634062.2| Bacillus amyloliquefaciens dif gene cluster directing synthesis of
             difficidin/oxydifficidin, strain FZB42
          Length = 69641

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   caaaaagacaccgaggaagt 254
             ||||||||||||||||||||
Sbjct: 65227 caaaaagacaccgaggaagt 65246
to top
>gb|AE003475.4| Drosophila melanogaster chromosome 3L, section 9 of 83 of the complete
             sequence
          Length = 301691

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    tacatatatacatattcagc 63
             ||||||||||||||||||||
Sbjct: 63583 tacatatatacatattcagc 63602
to top
>emb|AL592188.60| Human DNA sequence from clone RP11-337M7 on chromosome 22, complete
             sequence
          Length = 161802

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 37    aaagtagtacatatatacat 56
             ||||||||||||||||||||
Sbjct: 63366 aaagtagtacatatatacat 63385
to top
>gb|AC139752.4| Mus musculus BAC clone RP24-258K1 from 12, complete sequence
          Length = 189312

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 160   tccttggttgctgcagactg 179
             ||||||||||||||||||||
Sbjct: 27516 tccttggttgctgcagactg 27497
to top
>gb|AC131692.5| Mus musculus BAC clone RP23-391B20 from 19, complete sequence
          Length = 236246

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 351   tctcggcaagtgcctccttgtccttctg 378
             |||| ||||||| |||||||||||||||
Sbjct: 13894 tctcagcaagtggctccttgtccttctg 13867
to top
>gb|AC090944.2| Homo sapiens chromosome 3 clone RP11-238A9 map 3p, complete sequence
          Length = 162513

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 44    tacatatatacatattcagc 63
             ||||||||||||||||||||
Sbjct: 56878 tacatatatacatattcagc 56897
to top
>gb|AC073597.20| Homo sapiens Xp BAC RP11-793P1 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 120000

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 44    tacatatatacatattcagc 63
             ||||||||||||||||||||
Sbjct: 64978 tacatatatacatattcagc 64959


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,442,483
Number of Sequences: 3902068
Number of extensions: 5442483
Number of successful extensions: 147200
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 146923
Number of HSP's gapped (non-prelim): 276
length of query: 584
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 561
effective length of database: 17,143,297,704
effective search space: 9617390011944
effective search space used: 9617390011944
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top