Clone Information

BLAST Search Result

Clone Name	rbaal3a24
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL18_ARATH (P42791) 60S ribosomal protein L18	204	2e-52
2	RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)	187	2e-47
3	RL18_ORENI (P69091) 60S ribosomal protein L18	167	2e-41
4	RL18_OREMO (P69090) 60S ribosomal protein L18	167	2e-41
5	RL18_HUMAN (Q07020) 60S ribosomal protein L18	166	4e-41
6	RL18_ICTPU (Q90YV0) 60S ribosomal protein L18	165	8e-41
7	RL18_RAT (P12001) 60S ribosomal protein L18	164	1e-40
8	RL18_MOUSE (P35980) 60S ribosomal protein L18	164	1e-40
9	RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)	159	6e-39
10	RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)	154	2e-37
11	RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B	150	2e-36
12	RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A	149	5e-36
13	RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)	143	3e-34
14	RL18_TRYBB (P50885) 60S ribosomal protein L18	131	1e-30
15	RL18_SALSA (P24558) 60S ribosomal protein L18	90	3e-18
16	RL18_PIG (Q95342) 60S ribosomal protein L18 (Fragment)	44	4e-04
17	RL18E_PYRKO (Q5JJF5) 50S ribosomal protein L18e	43	5e-04
18	RL18E_PYRAB (Q9V197) 50S ribosomal protein L18e	42	8e-04
19	RL18E_PYRHO (O59302) 50S ribosomal protein L18e	42	0.001
20	RL18E_PYRFU (Q8U0E5) 50S ribosomal protein L18e	42	0.001
21	RL18E_METKA (Q8TVB7) 50S ribosomal protein L18e	40	0.003
22	RL18E_METJA (P54022) 50S ribosomal protein L18e	40	0.005
23	RL18E_METTH (O26145) 50S ribosomal protein L18e	38	0.015
24	RL18E_METMP (Q6LXM7) 50S ribosomal protein L18e	35	0.096
25	MYST4_MACFA (Q8WML3) Histone acetyltransferase MYST4 (EC 2.3.1.4...	35	0.16
26	RL18E_ARCFU (O29138) 50S ribosomal protein L18e	35	0.16
27	MYST4_MOUSE (Q8BRB7) Histone acetyltransferase MYST4 (EC 2.3.1.4...	33	0.48
28	MYST4_HUMAN (Q8WYB5) Histone acetyltransferase MYST4 (EC 2.3.1.4...	32	0.81
29	RL18E_METMA (Q8PW46) 50S ribosomal protein L18e	32	1.1
30	RL18E_METAC (Q8TT44) 50S ribosomal protein L18e	32	1.1
31	IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2	32	1.4
32	MURD_RHILO (Q98KB1) UDP-N-acetylmuramoylalanine--D-glutamate lig...	32	1.4
33	HOXV_AZOVI (P40597) Hydrogenase expression/formation protein hoxV	31	2.4
34	HUPK_AZOVI (P31878) Hydrogenase expression/formation protein hupK	31	2.4
35	RL18E_THEAC (Q9HL06) 50S ribosomal protein L18e	30	3.1
36	RL18E_PYRAE (Q8ZYQ2) 50S ribosomal protein L18e	30	4.0
37	NPDC1_MOUSE (Q64322) Neural proliferation differentiation and co...	30	4.0
38	PHYK_MAIZE (Q2N2K4) Probable phytol kinase, chloroplast precurso...	30	5.3
39	PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101	30	5.3
40	GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)	30	5.3
41	PHYK2_SOYBN (Q2N2K2) Probable phytol kinase 2, chloroplast precu...	30	5.3
42	PACC_GIBFU (Q8J1U9) pH-response transcription factor pacC/RIM101	30	5.3
43	TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit T...	30	5.3
44	NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleo...	29	6.9
45	NRX3A_RAT (Q07310) Neurexin-3-alpha precursor (Neurexin III-alpha)	29	6.9
46	PACC_CEPAC (Q96X49) pH-response transcription factor pacC/RIM101	29	6.9
47	POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)	29	9.0

>RL18_ARATH (P42791) 60S ribosomal protein L18|
          Length = 187

 Score =  204 bits (518), Expect = 2e-52
 Identities = 100/122 (81%), Positives = 111/122 (90%)
 Frame = -1

Query: 523 LSNFMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQL 344
           L  FM GKE+K IAV+VGTITDD+R+ EIPAMKVTALRFTE ARARI  AGGECLTFDQL
Sbjct: 67  LVEFMTGKEDK-IAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQL 125

Query: 343 ALRAPTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 164
           ALRAP G+NT+LLRGPKN+REAV+HFG APGVPHSH+KPYVR+KGRKFEKARG+R SRGF
Sbjct: 126 ALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGF 185

Query: 163 KV 158
           KV
Sbjct: 186 KV 187

to top

>RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)|
          Length = 183

 Score =  187 bits (474), Expect = 2e-47
 Identities = 93/122 (76%), Positives = 106/122 (86%)
 Frame = -1

Query: 523 LSNFMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQL 344
           L  +M+GKE K I VVVG +TDD+R+ ++P +KVTAL+FTETARARI  AGGECLTFDQL
Sbjct: 64  LIKYMQGKEGK-IGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQL 122

Query: 343 ALRAPTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 164
           ALR P  + T+LLRGPKNAREAV+HFG APGVPHSHTKPYVRSKGRKFEKARGRR SRGF
Sbjct: 123 ALRLPLTD-TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGF 181

Query: 163 KV 158
           +V
Sbjct: 182 RV 183

to top

>RL18_ORENI (P69091) 60S ribosomal protein L18|
          Length = 187

 Score =  167 bits (422), Expect = 2e-41
 Identities = 80/117 (68%), Positives = 97/117 (82%)
 Frame = -1

Query: 511 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 332
           + G+E K IAVVVGT+TDD+RIQ+IP +K+ ALR T+ AR RI+ AGG+ +TFDQLAL +
Sbjct: 71  LPGRENK-IAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALAS 129

Query: 331 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 161
           P G+ T+LL GP+ ARE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR S G+K
Sbjct: 130 PKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 186

to top

>RL18_OREMO (P69090) 60S ribosomal protein L18|
          Length = 187

 Score =  167 bits (422), Expect = 2e-41
 Identities = 80/117 (68%), Positives = 97/117 (82%)
 Frame = -1

Query: 511 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 332
           + G+E K IAVVVGT+TDD+RIQ+IP +K+ ALR T+ AR RI+ AGG+ +TFDQLAL +
Sbjct: 71  LPGRENK-IAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALAS 129

Query: 331 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 161
           P G+ T+LL GP+ ARE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR S G+K
Sbjct: 130 PKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 186

to top

>RL18_HUMAN (Q07020) 60S ribosomal protein L18|
          Length = 187

 Score =  166 bits (420), Expect = 4e-41
 Identities = 81/117 (69%), Positives = 95/117 (81%)
 Frame = -1

Query: 511 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 332
           + G+E K  AVVVGTITDD+R+QE+P +KV ALR T  AR+RI+ AGG+ LTFDQLAL +
Sbjct: 71  LPGRENKT-AVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDS 129

Query: 331 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 161
           P G  T+LL GP+  RE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K
Sbjct: 130 PKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186

to top

>RL18_ICTPU (Q90YV0) 60S ribosomal protein L18|
          Length = 187

 Score =  165 bits (417), Expect = 8e-41
 Identities = 80/117 (68%), Positives = 95/117 (81%)
 Frame = -1

Query: 511 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 332
           ++G+E K IAVVVGTITDD+RI  IP +KV ALR T  AR RI+ AGG+ +TFDQLA+  
Sbjct: 71  LQGRENK-IAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTT 129

Query: 331 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 161
           P G+ T+LL GP+ ARE  RHFGKAPG PHSHTKPY+RSKGRKFE+ARGRR SRG+K
Sbjct: 130 PKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFERARGRRASRGYK 186

to top

>RL18_RAT (P12001) 60S ribosomal protein L18|
          Length = 187

 Score =  164 bits (416), Expect = 1e-40
 Identities = 80/117 (68%), Positives = 94/117 (80%)
 Frame = -1

Query: 511 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 332
           + G+E K  AVVVGTITDD+RI E+P +KV ALR +  AR+RI+ AGG+ LTFDQLAL +
Sbjct: 71  LPGRENKT-AVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALES 129

Query: 331 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 161
           P G  T+LL GP+  RE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K
Sbjct: 130 PKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186

to top

>RL18_MOUSE (P35980) 60S ribosomal protein L18|
          Length = 187

 Score =  164 bits (415), Expect = 1e-40
 Identities = 79/117 (67%), Positives = 94/117 (80%)
 Frame = -1

Query: 511 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 332
           + G+E K  AVVVGT+TDD+RI E+P +KV ALR +  AR+RI+ AGG+ LTFDQLAL +
Sbjct: 71  LPGRENKT-AVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALES 129

Query: 331 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 161
           P G  T+LL GP+  RE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K
Sbjct: 130 PKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186

to top

>RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)|
          Length = 187

 Score =  159 bits (401), Expect = 6e-39
 Identities = 77/117 (65%), Positives = 94/117 (80%)
 Frame = -1

Query: 511 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 332
           ++G+E K  AVVVG ITDD+RI +IP +KV AL+ T   R+RI+ +GG+ +TFDQLAL A
Sbjct: 71  LQGRENKT-AVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAA 129

Query: 331 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 161
           P G+NT+LL GP+ ARE  RHFGKAPG PHS TKPYV SKGRKFE+ARGRR SRG+K
Sbjct: 130 PKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLSKGRKFERARGRRASRGYK 186

to top

>RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)|
          Length = 187

 Score =  154 bits (388), Expect = 2e-37
 Identities = 74/114 (64%), Positives = 88/114 (77%)
 Frame = -1

Query: 502 KEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTG 323
           + E   AVVVG IT D+RI +IP + V AL+ T  AR+RI+ AGG+ +TFDQLAL AP G
Sbjct: 73  RRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKG 132

Query: 322 ENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 161
           +NT+LL GP+ ARE  RHFGKAP  PHS TKPYV SKGRKFE+ARGRR SRG+K
Sbjct: 133 QNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLSKGRKFERARGRRASRGYK 186

to top

>RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B|
          Length = 187

 Score =  150 bits (379), Expect = 2e-36
 Identities = 75/113 (66%), Positives = 87/113 (76%)
 Frame = -1

Query: 496 EKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGEN 317
           E    V+VGT+TDD R+  +P + V ALRFT++ARARI+ AGGE LT DQLALRAPTG N
Sbjct: 78  EGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSN 137

Query: 316 TILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 158
           T+LLRG K+AREA RHFG     PH H  PYVRS+GRKFE+ARGRR SR FKV
Sbjct: 138 TVLLRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAFKV 187

to top

>RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A|
          Length = 187

 Score =  149 bits (376), Expect = 5e-36
 Identities = 74/122 (60%), Positives = 90/122 (73%)
 Frame = -1

Query: 523 LSNFMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQL 344
           L++      +    VVVGT+TDD R+  +P + + ALRFT++ARARI+ AGGE LT DQL
Sbjct: 69  LTSRKSASSQNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQL 128

Query: 343 ALRAPTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGF 164
           ALRAPTG NT+L+RG K+AREA RHFG     PH H  PYVRS+GRKFE+ARGRR SR F
Sbjct: 129 ALRAPTGSNTVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAF 185

Query: 163 KV 158
           KV
Sbjct: 186 KV 187

to top

>RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)|
          Length = 186

 Score =  143 bits (361), Expect = 3e-34
 Identities = 73/117 (62%), Positives = 87/117 (74%)
 Frame = -1

Query: 508 KGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAP 329
           +G   K + VVVGT+TDD RI E P   V ALRFT  ARA+IV AGGEC+T DQLA+RAP
Sbjct: 74  EGAANKTV-VVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAP 132

Query: 328 TGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 158
            G+NT++LRGP+N+REAVRHFG     PH    P + S GRKFE+ARGRR S+GFKV
Sbjct: 133 KGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFERARGRRRSKGFKV 186

to top

>RL18_TRYBB (P50885) 60S ribosomal protein L18|
          Length = 193

 Score =  131 bits (329), Expect = 1e-30
 Identities = 64/112 (57%), Positives = 90/112 (80%)
 Frame = -1

Query: 508 KGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAP 329
           KGK+   IAV+VG + DD+R+  IPA+++ ALRF+++AR RI  AGGECLTFDQLA+ AP
Sbjct: 80  KGKKSP-IAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAP 138

Query: 328 TGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNS 173
           TG+NT+LLRG K+ RE+V+HFG A GVP SH KP+V S+G++ +++  RR++
Sbjct: 139 TGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKERQRSSKRRHA 189

to top

>RL18_SALSA (P24558) 60S ribosomal protein L18|
          Length = 179

 Score = 90.1 bits (222), Expect = 3e-18
 Identities = 48/94 (51%), Positives = 62/94 (65%)
 Frame = -1

Query: 496 EKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGEN 317
           E   AVVVGT+TDD+RI EIP +KV+AL+ T   R RI+    + + F  LAL AP  + 
Sbjct: 75  ENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQK 133

Query: 316 TILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 215
           ++LL  P+NAR+  RHF  AP +P  HTKPYV S
Sbjct: 134 SVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165

to top

>RL18_PIG (Q95342) 60S ribosomal protein L18 (Fragment)|
          Length = 103

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = -1

Query: 511 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALR 410
           + G+E K  AVVVGTITDD+R QE+P +KV ALR
Sbjct: 71  LPGREGKT-AVVVGTITDDVRFQEVPKLKVCALR 103

to top

>RL18E_PYRKO (Q5JJF5) 50S ribosomal protein L18e|
          Length = 121

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 21/73 (28%), Positives = 42/73 (57%)
 Frame = -1

Query: 523 LSNFMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQL 344
           +S   +  +E ++ +V G++    R++    + V A +F+E AR +I+ AGGE ++ ++L
Sbjct: 50  ISKINRYTKEGDVVIVPGSVLGAGRLEH--KVVVAAWKFSEAARRKIIEAGGEAISIEEL 107

Query: 343 ALRAPTGENTILL 305
             R P G   I++
Sbjct: 108 MERNPKGSGVIIM 120

to top

>RL18E_PYRAB (Q9V197) 50S ribosomal protein L18e|
          Length = 120

 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 23/73 (31%), Positives = 43/73 (58%)
 Frame = -1

Query: 523 LSNFMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQL 344
           +S   +  ++ ++ VV G++    +I++   + V A +F+ETAR +I  AGGE +T ++L
Sbjct: 49  VSRINRYAKDGDMIVVPGSVLGAGKIEK--KVIVAAWKFSETARRKIEEAGGEAITIEEL 106

Query: 343 ALRAPTGENTILL 305
             R P G   I++
Sbjct: 107 IKRNPKGSGVIIM 119

to top

>RL18E_PYRHO (O59302) 50S ribosomal protein L18e|
          Length = 120

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/73 (30%), Positives = 43/73 (58%)
 Frame = -1

Query: 523 LSNFMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQL 344
           +S   +  ++ ++ VV G++    ++++   + V A +F+ETAR +I  AGGE +T ++L
Sbjct: 49  VSKINRYAKDGDMIVVPGSVLGAGKLEK--KVIVAAWKFSETARKKITEAGGEAITIEEL 106

Query: 343 ALRAPTGENTILL 305
             R P G   I++
Sbjct: 107 IERNPKGSGVIIM 119

to top

>RL18E_PYRFU (Q8U0E5) 50S ribosomal protein L18e|
          Length = 120

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/73 (30%), Positives = 42/73 (57%)
 Frame = -1

Query: 523 LSNFMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQL 344
           +S   +   +  + VV G++    ++++   + V A +F+ETAR +I+ AGGE +T ++L
Sbjct: 49  VSKINRYANDGEMIVVPGSVLGAGKLEK--KVIVAAWKFSETARRKIIEAGGEAITIEEL 106

Query: 343 ALRAPTGENTILL 305
             R PTG    ++
Sbjct: 107 IERNPTGSGVRIM 119

to top

>RL18E_METKA (Q8TVB7) 50S ribosomal protein L18e|
          Length = 127

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = -1

Query: 499 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTG 323
           +E+   +V G +  D  I +   ++V A RF+ TAR +I  AGGECLT  +L    P G
Sbjct: 64  QEEETVLVPGKVLGDGVITQ--PLRVAAWRFSRTARMKIEAAGGECLTIRELLEENPEG 120

to top

>RL18E_METJA (P54022) 50S ribosomal protein L18e|
          Length = 121

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 22/73 (30%), Positives = 39/73 (53%)
 Frame = -1

Query: 523 LSNFMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQL 344
           LS   +  +E ++ +V G +    +++    + V A  F+ETA+  I  AGGE +T ++L
Sbjct: 50  LSKINRYTKEGDVVLVPGKVLGAGKLEH--KVVVAAFAFSETAKKLIKEAGGEAITIEEL 107

Query: 343 ALRAPTGENTILL 305
             R P G N  ++
Sbjct: 108 IKRNPKGSNVKIM 120

to top

>RL18E_METTH (O26145) 50S ribosomal protein L18e|
          Length = 121

 Score = 38.1 bits (87), Expect = 0.015
 Identities = 21/69 (30%), Positives = 35/69 (50%)
 Frame = -1

Query: 523 LSNFMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQL 344
           +S   +  +E    +V G +     +     ++V AL F++TAR +I  AGGECLT  ++
Sbjct: 50  ISKINRHSDEDETVLVPGKVLGSGNLDH--RVQVVALSFSQTARDKIERAGGECLTLGKI 107

Query: 343 ALRAPTGEN 317
               P  +N
Sbjct: 108 VEENPAIKN 116

to top

>RL18E_METMP (Q6LXM7) 50S ribosomal protein L18e|
          Length = 120

 Score = 35.4 bits (80), Expect = 0.096
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -1

Query: 424 VTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILL 305
           V A  F+ETA++ I   GG+CLT ++L    P G    ++
Sbjct: 80  VAAFSFSETAKSAIEAVGGKCLTIEELIAENPKGSKVTIM 119

to top

>MYST4_MACFA (Q8WML3) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            4)
          Length = 1784

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
 Frame = +1

Query: 4    DSHKNLAKYHSNTGAIDCAALSTKYFTNYCQLLKQNNSRSTQTATNQKGQLKP*SHGCSS 183
            ++++N + Y S  G   C   S++   +Y  L   + ++S+   T Q   +   S  CS 
Sbjct: 1389 ENYENPSSYDSTMGGSICGNGSSQNSCSYSNLTSSSLTQSSCAVTQQMSNI---SGSCSM 1445

Query: 184  YHEPSQTSYPWSAHRAWCGCAAHQEPCRSA-----------SPPHGHSWVPSTGSCS 321
              + S +S P  + ++  GC   + P  S            +PP   + +P TG+ +
Sbjct: 1446 LQQTSISSPPTCSVKSPQGCVVERPPSSSQQLAQCSMAANFTPPMQLAEIPETGNAN 1502

to top

>RL18E_ARCFU (O29138) 50S ribosomal protein L18e|
          Length = 117

 Score = 34.7 bits (78), Expect = 0.16
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = -1

Query: 523 LSNFMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQL 344
           +S   K  +     VV G +     I +   +KV AL F+E A ++I  AGG C+  ++L
Sbjct: 46  VSKIEKYAKPNEYVVVPGKVLGSGSITK--PVKVAALSFSEKAASKIREAGGVCMKIEEL 103

Query: 343 ALRAPTGENTILL 305
               P G    L+
Sbjct: 104 LKENPKGSGVRLM 116

to top

>MYST4_MOUSE (Q8BRB7) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            4) (Querkopf protein)
          Length = 1872

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 21/89 (23%), Positives = 40/89 (44%)
 Frame = +1

Query: 4    DSHKNLAKYHSNTGAIDCAALSTKYFTNYCQLLKQNNSRSTQTATNQKGQLKP*SHGCSS 183
            ++++N + Y S  G   C   S++   +Y  L   N ++++   T Q   +   S  CS 
Sbjct: 1477 ENYENPSSYDSTMGGSICGNGSSQNSCSYSSLTSSNLTQNSCAVTQQMSNI---SGSCSM 1533

Query: 184  YHEPSQTSYPWSAHRAWCGCAAHQEPCRS 270
              + S +S P  + ++  GC   + P  S
Sbjct: 1534 LQQTSISSPPTCSVKSPQGCVVERPPSSS 1562

to top

>MYST4_HUMAN (Q8WYB5) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            4) (Histone acetyltransferase MOZ2) (Monocytic leukemia
            zinc finger protein-related factor) (Histone
            acetyltransferas
          Length = 2073

 Score = 32.3 bits (72), Expect = 0.81
 Identities = 21/89 (23%), Positives = 40/89 (44%)
 Frame = +1

Query: 4    DSHKNLAKYHSNTGAIDCAALSTKYFTNYCQLLKQNNSRSTQTATNQKGQLKP*SHGCSS 183
            ++++N + Y S  G   C   S++   +Y  L   + ++S+   T Q   +   S  CS 
Sbjct: 1678 ENYENPSSYDSTMGGSICGNGSSQNSCSYSNLTSSSLTQSSCAVTQQMSNI---SGSCSM 1734

Query: 184  YHEPSQTSYPWSAHRAWCGCAAHQEPCRS 270
              + S +S P  + ++  GC   + P  S
Sbjct: 1735 LQQTSISSPPTCSVKSPQGCVVERPPSSS 1763

to top

>RL18E_METMA (Q8PW46) 50S ribosomal protein L18e|
          Length = 126

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -1

Query: 424 VTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILLR 302
           V A+ F+E+A  +I  AGG+CL+ +++    P G    + R
Sbjct: 86  VAAVTFSESAVEKITEAGGKCLSVEEIMEANPKGSGIRIFR 126

to top

>RL18E_METAC (Q8TT44) 50S ribosomal protein L18e|
          Length = 126

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -1

Query: 424 VTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILLR 302
           + AL F+++A  +I  AGG+CL+ +++    P G    + R
Sbjct: 86  IAALTFSDSAFEKITEAGGKCLSLEEIMEANPKGSGIRIFR 126

to top

>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 26/82 (31%), Positives = 35/82 (42%)
 Frame = +1

Query: 139 NQKGQLKP*SHGCSSYHEPSQTSYPWSAHRAWCGCAAHQEPCRSASPPHGHSWVPSTGSC 318
           N KG  KP          P+  S P S   +    AA   P R ASP   H   P+ G+ 
Sbjct: 54  NAKGDSKP-----VQQRRPAAPSAPASTSSSAPTPAA---PARQASPASAHQQAPTPGAP 105

Query: 319 SPQLEHGEQAGQK*GTPHQH*Q 384
           +P+ + G + G    TP +H Q
Sbjct: 106 TPRPQGGARPGMP--TPGRHGQ 125

to top

>MURD_RHILO (Q98KB1) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 466

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = -1

Query: 400 TARARIVNAGGECLTFDQ----LALRAPTGENTILLRGPKNAREAVRHFGKAPGVPHSHT 233
           TARA ++  G + L +D     +A  A TG  T  LRG   A+ +   F  +PGVP +H 
Sbjct: 24  TARA-LIEGGAQVLAWDDNPDSVAKAAATGIATADLRGADWAKFSA--FVLSPGVPLTHP 80

Query: 232 KPY 224
           KP+
Sbjct: 81  KPH 83

to top

>HOXV_AZOVI (P40597) Hydrogenase expression/formation protein hoxV|
          Length = 348

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +3

Query: 159 TLKPRLFLLPRAFSNFLPLERT*GLVWLCGTPGALPKCLTASRAFLGPLNRIVFSPVGAR 338
           +++  L  L + +   +PLER   L+ LC    A  + LTA RA   P +  +   + A 
Sbjct: 95  SIRESLLRLVQVWELPVPLERLKALLALCRRAAARLQALTAFRAAPLPADAELEGTLAAL 154

Query: 339 RASWSKVRHSPPA 377
            A+W+ ++   PA
Sbjct: 155 AAAWADLQPPAPA 167

to top

>HUPK_AZOVI (P31878) Hydrogenase expression/formation protein hupK|
          Length = 342

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +3

Query: 159 TLKPRLFLLPRAFSNFLPLERT*GLVWLCGTPGALPKCLTASRAFLGPLNRIVFSPVGAR 338
           +++  L  L + +   +PLER   L+ LC    A  + LTA RA   P +  +   + A 
Sbjct: 89  SIRESLLRLVQVWELPVPLERLKALLALCRRAAARLQALTAFRAAPLPADAELEGTLAAL 148

Query: 339 RASWSKVRHSPPA 377
            A+W+ ++   PA
Sbjct: 149 AAAWADLQPPAPA 161

to top

>RL18E_THEAC (Q9HL06) 50S ribosomal protein L18e|
          Length = 120

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 20/74 (27%), Positives = 38/74 (51%)
 Frame = -1

Query: 523 LSNFMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQL 344
           LS   K  ++ +I VV G +    +I +   + V A +F++TA  ++ N+G   +   ++
Sbjct: 49  LSKIDKYAKDGDIIVVPGYVLGVGKISK--KVTVGAYKFSKTAMEKLSNSGCAFMNISEI 106

Query: 343 ALRAPTGENTILLR 302
           A   P G N  ++R
Sbjct: 107 AKDNPKGTNVKIMR 120

to top

>RL18E_PYRAE (Q8ZYQ2) 50S ribosomal protein L18e|
          Length = 122

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -1

Query: 499 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTG 323
           +E ++ VV G +    ++ +   + V A++ +  A  +++ AGGE LT  +L  + P G
Sbjct: 59  KEGDVVVVPGKLLAGGQLNK--KIIVAAVKISPKAARKVIEAGGEVLTIPELVRKYPRG 115

to top

>NPDC1_MOUSE (Q64322) Neural proliferation differentiation and control protein 1|
           precursor (NPDC-1 protein)
          Length = 332

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 24/86 (27%), Positives = 32/86 (37%)
 Frame = +3

Query: 228 GLVWLCGTPGALPKCLTASRAFLGPLNRIVFSPVGARRASWSKVRHSPPALTILALAVSV 407
           GL    GT   +P    +SRA  GP+      P G         RH      +L LA  +
Sbjct: 149 GLPSTHGTSSPIPHTSLSSRASSGPVQMSPLEPQG---------RHGNGLTLVLILAFCL 199

Query: 408 NLRAVTFIAGISWIRMSSVIVPTTTA 485
              A   +A + W R+   I  T  A
Sbjct: 200 ASSAALAVAALCWCRLQREIRLTQKA 225

to top

>PHYK_MAIZE (Q2N2K4) Probable phytol kinase, chloroplast precursor (EC 2.7.-.-)|
          Length = 303

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 217 SAHRAWCGCAAHQEPCRSASPPHGHSWVPSTGS 315
           +A  AW G A+      S SPPH  +  PS GS
Sbjct: 2   AAAAAWTGAASPNSLLLSRSPPHAAALAPSPGS 34

to top

>PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101|
          Length = 613

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 238 GCAAHQEPCRSASPPHGHSWVPSTGSCSPQLEHGEQA 348
           G  A   P  S S   GHS  PS+ + SPQ  HG  A
Sbjct: 411 GTPAVTPPSSSMSYTSGHSPSPSSSAMSPQSRHGSTA 447

to top

>GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 815

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
 Frame = +1

Query: 154 LKP*SHGCSSYHEPSQTSY---PWSAHRAWCGCAAHQEPCRSASPPHGHSWVPSTGSCSP 324
           + P S  C +      TS+   P +  R+WC      EPC             ST SC  
Sbjct: 644 MTPSSAACRTCWAACATSWCRTPSTTPRSWCSTPTRMEPCGRRCSTTPSCRRRSTWSCRL 703

Query: 325 QLEHGEQAGQ 354
             EH   AGQ
Sbjct: 704 CAEHLRGAGQ 713

to top

>PHYK2_SOYBN (Q2N2K2) Probable phytol kinase 2, chloroplast precursor (EC|
           2.7.-.-)
          Length = 292

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 217 SAHRAWCGCAAHQEPCRSASPPHGHSWVPSTGS 315
           +A  AW G A+      S SPPH  +  PS GS
Sbjct: 2   AAAAAWTGAASPNSLLLSRSPPHAAALAPSPGS 34

to top

>PACC_GIBFU (Q8J1U9) pH-response transcription factor pacC/RIM101|
          Length = 618

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 238 GCAAHQEPCRSASPPHGHSWVPSTGSCSPQLEHGEQA 348
           G  A   P  S S   GHS  PS+ + SPQ  HG  A
Sbjct: 416 GTPAVTPPSSSMSYTSGHSPSPSSSAMSPQSRHGSTA 452

to top

>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,|
           mitochondrial precursor
          Length = 466

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -1

Query: 301 GPKNAREAVRHFGKAPGVPHSHTKP 227
           GPKN  EAV   G  P VP   T+P
Sbjct: 440 GPKNLSEAVSSIGSLPPVPQQPTEP 464

to top

>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (DNup214)
          Length = 1711

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 24/87 (27%), Positives = 37/87 (42%)
 Frame = +3

Query: 246  GTPGALPKCLTASRAFLGPLNRIVFSPVGARRASWSKVRHSPPALTILALAVSVNLRAVT 425
            GT  A+PK   +S A          +P G   A+ +K  +S P  T+ +   ++  +   
Sbjct: 1108 GTAAAVPKSEPSSTATTSVATSASTAPFGIFSAALAKPSNSEPITTVTSNTTTITSKPTN 1167

Query: 426  FIAGISWIRMSSVIVPTTTAMFFSSFP 506
             IA  S     S  V TT A+  S+ P
Sbjct: 1168 VIASSSVTDAPS--VTTTNAVTSSTDP 1192

to top

>NRX3A_RAT (Q07310) Neurexin-3-alpha precursor (Neurexin III-alpha)|
          Length = 1578

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 332 STESKLVKSEALPTSIDNPCPRCLCEPQSGNLHCWDLLDPHVICDCA 472
           ++E +L+ S+++    + PC    CE  +G + C+ LLD H  CDC+
Sbjct: 183 NSEPRLLGSQSVQLEAEGPCGERPCE--NGGI-CF-LLDGHPTCDCS 225

to top

>PACC_CEPAC (Q96X49) pH-response transcription factor pacC/RIM101|
          Length = 621

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +1

Query: 172 GCSSYHEPSQTSYPWSAHRAWC--GCAAHQEPCRSASPPHGHSWVPSTGSCSPQLEHGEQ 345
           G   YH+P   +   S   A    G  A   P  + S   GHS  PS  + SPQ  H   
Sbjct: 380 GPDGYHQPVSAATMASPLTAMSSTGTPAVTPPSSAVSYTSGHSPSPSAPAMSPQSRHSST 439

Query: 346 AG 351
           +G
Sbjct: 440 SG 441

to top

>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -3

Query: 455  HADPRDPSNEGYRSEVHRDSEGKDCQCWW 369
            H+     SN    SE  R S+  DC CWW
Sbjct: 1000 HSSHPSSSNSRLESETTRLSKYIDCYCWW 1028


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,344,317
Number of Sequences: 219361
Number of extensions: 1553937
Number of successful extensions: 5095
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 4873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5087
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

to top

full-length cDNA and EST

Clone Information

BLAST Search Result