Clone Information

BLAST Search Result

Clone Name	rbaal3a23
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RL18_ARATH (P42791) 60S ribosomal protein L18	203	3e-52
2	RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)	186	4e-47
3	RL18_ORENI (P69091) 60S ribosomal protein L18	167	2e-41
4	RL18_OREMO (P69090) 60S ribosomal protein L18	167	2e-41
5	RL18_HUMAN (Q07020) 60S ribosomal protein L18	166	4e-41
6	RL18_ICTPU (Q90YV0) 60S ribosomal protein L18	165	9e-41
7	RL18_RAT (P12001) 60S ribosomal protein L18	164	1e-40
8	RL18_MOUSE (P35980) 60S ribosomal protein L18	164	2e-40
9	RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)	159	6e-39
10	RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)	154	2e-37
11	RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B	150	2e-36
12	RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A	148	9e-36
13	RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)	143	3e-34
14	RL18_TRYBB (P50885) 60S ribosomal protein L18	131	1e-30
15	RL18_SALSA (P24558) 60S ribosomal protein L18	90	4e-18
16	RL18_PIG (Q95342) 60S ribosomal protein L18 (Fragment)	44	4e-04
17	RL18E_PYRKO (Q5JJF5) 50S ribosomal protein L18e	42	9e-04
18	RL18E_PYRAB (Q9V197) 50S ribosomal protein L18e	42	0.001
19	RL18E_PYRHO (O59302) 50S ribosomal protein L18e	42	0.001
20	RL18E_PYRFU (Q8U0E5) 50S ribosomal protein L18e	42	0.001
21	RL18E_METKA (Q8TVB7) 50S ribosomal protein L18e	40	0.003
22	RL18E_METJA (P54022) 50S ribosomal protein L18e	38	0.016
23	RL18E_METTH (O26145) 50S ribosomal protein L18e	38	0.022
24	MYST4_MACFA (Q8WML3) Histone acetyltransferase MYST4 (EC 2.3.1.4...	36	0.082
25	RL18E_METMP (Q6LXM7) 50S ribosomal protein L18e	35	0.11
26	RL18E_ARCFU (O29138) 50S ribosomal protein L18e	34	0.24
27	MYST4_MOUSE (Q8BRB7) Histone acetyltransferase MYST4 (EC 2.3.1.4...	34	0.24
28	MYST4_HUMAN (Q8WYB5) Histone acetyltransferase MYST4 (EC 2.3.1.4...	33	0.41
29	RL18E_METMA (Q8PW46) 50S ribosomal protein L18e	32	1.2
30	RL18E_METAC (Q8TT44) 50S ribosomal protein L18e	32	1.2
31	IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2	32	1.5
32	MURD_RHILO (Q98KB1) UDP-N-acetylmuramoylalanine--D-glutamate lig...	32	1.5
33	HOXV_AZOVI (P40597) Hydrogenase expression/formation protein hoxV	31	2.6
34	HUPK_AZOVI (P31878) Hydrogenase expression/formation protein hupK	31	2.6
35	GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)	31	2.6
36	RL18E_PYRAE (Q8ZYQ2) 50S ribosomal protein L18e	30	4.5
37	NPDC1_MOUSE (Q64322) Neural proliferation differentiation and co...	30	4.5
38	PHYK_MAIZE (Q2N2K4) Probable phytol kinase, chloroplast precurso...	30	5.9
39	PHYK2_SOYBN (Q2N2K2) Probable phytol kinase 2, chloroplast precu...	30	5.9
40	TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit T...	30	5.9
41	PACC_GIBFU (Q8J1U9) pH-response transcription factor pacC/RIM101	30	5.9
42	PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101	30	5.9
43	PACC_CEPAC (Q96X49) pH-response transcription factor pacC/RIM101	29	7.7
44	NRX3A_RAT (Q07310) Neurexin-3-alpha precursor (Neurexin III-alpha)	29	7.7
45	NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleo...	29	7.7
46	POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)	29	10.0

>RL18_ARATH (P42791) 60S ribosomal protein L18|
          Length = 187

 Score =  203 bits (516), Expect = 3e-52
 Identities = 99/119 (83%), Positives = 110/119 (92%)
 Frame = -3

Query: 547 FMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALR 368
           FM GKE+K IAV+VGTITDD+R+ EIPAMKVTALRFTE ARARI  AGGECLTFDQLALR
Sbjct: 70  FMTGKEDK-IAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALR 128

Query: 367 APTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 191
           AP G+NT+LLRGPKN+REAV+HFG APGVPHSH+KPYVR+KGRKFEKARG+R SRGFKV
Sbjct: 129 APLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEKARGKRKSRGFKV 187

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>RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)|
          Length = 183

 Score =  186 bits (472), Expect = 4e-47
 Identities = 92/119 (77%), Positives = 105/119 (88%)
 Frame = -3

Query: 547 FMKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALR 368
           +M+GKE K I VVVG +TDD+R+ ++P +KVTAL+FTETARARI  AGGECLTFDQLALR
Sbjct: 67  YMQGKEGK-IGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALR 125

Query: 367 APTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 191
            P  + T+LLRGPKNAREAV+HFG APGVPHSHTKPYVRSKGRKFEKARGRR SRGF+V
Sbjct: 126 LPLTD-TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRKSRGFRV 183

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>RL18_ORENI (P69091) 60S ribosomal protein L18|
          Length = 187

 Score =  167 bits (422), Expect = 2e-41
 Identities = 80/117 (68%), Positives = 97/117 (82%)
 Frame = -3

Query: 544 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 365
           + G+E K IAVVVGT+TDD+RIQ+IP +K+ ALR T+ AR RI+ AGG+ +TFDQLAL +
Sbjct: 71  LPGRENK-IAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALAS 129

Query: 364 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 194
           P G+ T+LL GP+ ARE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR S G+K
Sbjct: 130 PKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 186

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>RL18_OREMO (P69090) 60S ribosomal protein L18|
          Length = 187

 Score =  167 bits (422), Expect = 2e-41
 Identities = 80/117 (68%), Positives = 97/117 (82%)
 Frame = -3

Query: 544 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 365
           + G+E K IAVVVGT+TDD+RIQ+IP +K+ ALR T+ AR RI+ AGG+ +TFDQLAL +
Sbjct: 71  LPGRENK-IAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALAS 129

Query: 364 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 194
           P G+ T+LL GP+ ARE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR S G+K
Sbjct: 130 PKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASCGYK 186

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>RL18_HUMAN (Q07020) 60S ribosomal protein L18|
          Length = 187

 Score =  166 bits (420), Expect = 4e-41
 Identities = 81/117 (69%), Positives = 95/117 (81%)
 Frame = -3

Query: 544 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 365
           + G+E K  AVVVGTITDD+R+QE+P +KV ALR T  AR+RI+ AGG+ LTFDQLAL +
Sbjct: 71  LPGRENKT-AVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDS 129

Query: 364 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 194
           P G  T+LL GP+  RE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K
Sbjct: 130 PKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186

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>RL18_ICTPU (Q90YV0) 60S ribosomal protein L18|
          Length = 187

 Score =  165 bits (417), Expect = 9e-41
 Identities = 80/117 (68%), Positives = 95/117 (81%)
 Frame = -3

Query: 544 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 365
           ++G+E K IAVVVGTITDD+RI  IP +KV ALR T  AR RI+ AGG+ +TFDQLA+  
Sbjct: 71  LQGRENK-IAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTT 129

Query: 364 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 194
           P G+ T+LL GP+ ARE  RHFGKAPG PHSHTKPY+RSKGRKFE+ARGRR SRG+K
Sbjct: 130 PKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFERARGRRASRGYK 186

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>RL18_RAT (P12001) 60S ribosomal protein L18|
          Length = 187

 Score =  164 bits (416), Expect = 1e-40
 Identities = 80/117 (68%), Positives = 94/117 (80%)
 Frame = -3

Query: 544 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 365
           + G+E K  AVVVGTITDD+RI E+P +KV ALR +  AR+RI+ AGG+ LTFDQLAL +
Sbjct: 71  LPGRENKT-AVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALES 129

Query: 364 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 194
           P G  T+LL GP+  RE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K
Sbjct: 130 PKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186

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>RL18_MOUSE (P35980) 60S ribosomal protein L18|
          Length = 187

 Score =  164 bits (415), Expect = 2e-40
 Identities = 79/117 (67%), Positives = 94/117 (80%)
 Frame = -3

Query: 544 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 365
           + G+E K  AVVVGT+TDD+RI E+P +KV ALR +  AR+RI+ AGG+ LTFDQLAL +
Sbjct: 71  LPGRENKT-AVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALES 129

Query: 364 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 194
           P G  T+LL GP+  RE  RHFGKAPG PHSHTKPYVRSKGRKFE+ARGRR SRG+K
Sbjct: 130 PKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRRASRGYK 186

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>RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)|
          Length = 187

 Score =  159 bits (401), Expect = 6e-39
 Identities = 77/117 (65%), Positives = 94/117 (80%)
 Frame = -3

Query: 544 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRA 365
           ++G+E K  AVVVG ITDD+RI +IP +KV AL+ T   R+RI+ +GG+ +TFDQLAL A
Sbjct: 71  LQGRENKT-AVVVGYITDDVRIHDIPKLKVCALKITSGDRSRILKSGGQIMTFDQLALAA 129

Query: 364 PTGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 194
           P G+NT+LL GP+ ARE  RHFGKAPG PHS TKPYV SKGRKFE+ARGRR SRG+K
Sbjct: 130 PKGQNTVLLSGPRKAREVYRHFGKAPGTPHSRTKPYVLSKGRKFERARGRRASRGYK 186

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>RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)|
          Length = 187

 Score =  154 bits (388), Expect = 2e-37
 Identities = 74/114 (64%), Positives = 88/114 (77%)
 Frame = -3

Query: 535 KEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTG 356
           + E   AVVVG IT D+RI +IP + V AL+ T  AR+RI+ AGG+ +TFDQLAL AP G
Sbjct: 73  RRENKTAVVVGCITADVRIHDIPKLTVCALKLTSGARSRILKAGGQIMTFDQLALAAPKG 132

Query: 355 ENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFK 194
           +NT+LL GP+ ARE  RHFGKAP  PHS TKPYV SKGRKFE+ARGRR SRG+K
Sbjct: 133 QNTVLLSGPRKAREVYRHFGKAPSTPHSRTKPYVLSKGRKFERARGRRASRGYK 186

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>RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B|
          Length = 187

 Score =  150 bits (379), Expect = 2e-36
 Identities = 75/113 (66%), Positives = 87/113 (76%)
 Frame = -3

Query: 529 EKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGEN 350
           E    V+VGT+TDD R+  +P + V ALRFT++ARARI+ AGGE LT DQLALRAPTG N
Sbjct: 78  EGKTTVIVGTVTDDERLLTVPKLSVAALRFTKSARARILKAGGEVLTLDQLALRAPTGSN 137

Query: 349 TILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 191
           T+LLRG K+AREA RHFG     PH H  PYVRS+GRKFE+ARGRR SR FKV
Sbjct: 138 TVLLRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAFKV 187

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>RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A|
          Length = 187

 Score =  148 bits (374), Expect = 9e-36
 Identities = 73/113 (64%), Positives = 87/113 (76%)
 Frame = -3

Query: 529 EKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGEN 350
           +    VVVGT+TDD R+  +P + + ALRFT++ARARI+ AGGE LT DQLALRAPTG N
Sbjct: 78  QNKTTVVVGTVTDDERMLTVPKLSIAALRFTKSARARILKAGGEVLTLDQLALRAPTGSN 137

Query: 349 TILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 191
           T+L+RG K+AREA RHFG     PH H  PYVRS+GRKFE+ARGRR SR FKV
Sbjct: 138 TVLVRGKKHAREAYRHFGFG---PHKHKAPYVRSEGRKFERARGRRKSRAFKV 187

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>RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)|
          Length = 186

 Score =  143 bits (361), Expect = 3e-34
 Identities = 73/117 (62%), Positives = 87/117 (74%)
 Frame = -3

Query: 541 KGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAP 362
           +G   K + VVVGT+TDD RI E P   V ALRFT  ARA+IV AGGEC+T DQLA+RAP
Sbjct: 74  EGAANKTV-VVVGTVTDDARIFEFPKTTVAALRFTAGARAKIVKAGGECITLDQLAVRAP 132

Query: 361 TGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFKV 191
            G+NT++LRGP+N+REAVRHFG     PH    P + S GRKFE+ARGRR S+GFKV
Sbjct: 133 KGQNTLILRGPRNSREAVRHFGMG---PHKGKAPRILSTGRKFERARGRRRSKGFKV 186

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>RL18_TRYBB (P50885) 60S ribosomal protein L18|
          Length = 193

 Score =  131 bits (329), Expect = 1e-30
 Identities = 64/112 (57%), Positives = 90/112 (80%)
 Frame = -3

Query: 541 KGKEEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAP 362
           KGK+   IAV+VG + DD+R+  IPA+++ ALRF+++AR RI  AGGECLTFDQLA+ AP
Sbjct: 80  KGKKSP-IAVIVGDVLDDVRMTRIPALRICALRFSKSARERITGAGGECLTFDQLAMMAP 138

Query: 361 TGENTILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRSKGRKFEKARGRRNS 206
           TG+NT+LLRG K+ RE+V+HFG A GVP SH KP+V S+G++ +++  RR++
Sbjct: 139 TGKNTMLLRGRKSGRESVKHFG-AAGVPGSHAKPHVSSRGKERQRSSKRRHA 189

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>RL18_SALSA (P24558) 60S ribosomal protein L18|
          Length = 179

 Score = 90.1 bits (222), Expect = 4e-18
 Identities = 48/94 (51%), Positives = 62/94 (65%)
 Frame = -3

Query: 529 EKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGEN 350
           E   AVVVGT+TDD+RI EIP +KV+AL+ T   R RI+    + + F  LAL AP  + 
Sbjct: 75  ENRTAVVVGTVTDDVRIHEIPNLKVSALKITRRNRTRILKF-VQIMRFVGLALAAPNRQK 133

Query: 349 TILLRGPKNAREAVRHFGKAPGVPHSHTKPYVRS 248
           ++LL  P+NAR+  RHF  AP +P  HTKPYV S
Sbjct: 134 SVLLSAPRNARDVSRHFANAPSIP--HTKPYVLS 165

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>RL18_PIG (Q95342) 60S ribosomal protein L18 (Fragment)|
          Length = 103

 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = -3

Query: 544 MKGKEEKNIAVVVGTITDDMRIQEIPAMKVTALR 443
           + G+E K  AVVVGTITDD+R QE+P +KV ALR
Sbjct: 71  LPGREGKT-AVVVGTITDDVRFQEVPKLKVCALR 103

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>RL18E_PYRKO (Q5JJF5) 50S ribosomal protein L18e|
          Length = 121

 Score = 42.4 bits (98), Expect = 9e-04
 Identities = 20/65 (30%), Positives = 39/65 (60%)
 Frame = -3

Query: 532 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGE 353
           +E ++ +V G++    R++    + V A +F+E AR +I+ AGGE ++ ++L  R P G 
Sbjct: 58  KEGDVVIVPGSVLGAGRLEH--KVVVAAWKFSEAARRKIIEAGGEAISIEELMERNPKGS 115

Query: 352 NTILL 338
             I++
Sbjct: 116 GVIIM 120

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>RL18E_PYRAB (Q9V197) 50S ribosomal protein L18e|
          Length = 120

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 22/65 (33%), Positives = 40/65 (61%)
 Frame = -3

Query: 532 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGE 353
           ++ ++ VV G++    +I++   + V A +F+ETAR +I  AGGE +T ++L  R P G 
Sbjct: 57  KDGDMIVVPGSVLGAGKIEK--KVIVAAWKFSETARRKIEEAGGEAITIEELIKRNPKGS 114

Query: 352 NTILL 338
             I++
Sbjct: 115 GVIIM 119

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>RL18E_PYRHO (O59302) 50S ribosomal protein L18e|
          Length = 120

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 21/65 (32%), Positives = 40/65 (61%)
 Frame = -3

Query: 532 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGE 353
           ++ ++ VV G++    ++++   + V A +F+ETAR +I  AGGE +T ++L  R P G 
Sbjct: 57  KDGDMIVVPGSVLGAGKLEK--KVIVAAWKFSETARKKITEAGGEAITIEELIERNPKGS 114

Query: 352 NTILL 338
             I++
Sbjct: 115 GVIIM 119

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>RL18E_PYRFU (Q8U0E5) 50S ribosomal protein L18e|
          Length = 120

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 18/40 (45%), Positives = 27/40 (67%)
 Frame = -3

Query: 457 VTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILL 338
           V A +F+ETAR +I+ AGGE +T ++L  R PTG    ++
Sbjct: 80  VAAWKFSETARRKIIEAGGEAITIEELIERNPTGSGVRIM 119

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>RL18E_METKA (Q8TVB7) 50S ribosomal protein L18e|
          Length = 127

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 23/59 (38%), Positives = 33/59 (55%)
 Frame = -3

Query: 532 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTG 356
           +E+   +V G +  D  I +   ++V A RF+ TAR +I  AGGECLT  +L    P G
Sbjct: 64  QEEETVLVPGKVLGDGVITQ--PLRVAAWRFSRTARMKIEAAGGECLTIRELLEENPEG 120

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>RL18E_METJA (P54022) 50S ribosomal protein L18e|
          Length = 121

 Score = 38.1 bits (87), Expect = 0.016
 Identities = 20/65 (30%), Positives = 36/65 (55%)
 Frame = -3

Query: 532 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGE 353
           +E ++ +V G +    +++    + V A  F+ETA+  I  AGGE +T ++L  R P G 
Sbjct: 58  KEGDVVLVPGKVLGAGKLEH--KVVVAAFAFSETAKKLIKEAGGEAITIEELIKRNPKGS 115

Query: 352 NTILL 338
           N  ++
Sbjct: 116 NVKIM 120

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>RL18E_METTH (O26145) 50S ribosomal protein L18e|
          Length = 121

 Score = 37.7 bits (86), Expect = 0.022
 Identities = 22/54 (40%), Positives = 31/54 (57%)
 Frame = -3

Query: 511 VVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTGEN 350
           V+G+   D R+Q      V AL F++TAR +I  AGGECLT  ++    P  +N
Sbjct: 69  VLGSGNLDHRVQ------VVALSFSQTARDKIERAGGECLTLGKIVEENPAIKN 116

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>MYST4_MACFA (Q8WML3) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            4)
          Length = 1784

 Score = 35.8 bits (81), Expect = 0.082
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
 Frame = +1

Query: 31   TVDSHKNLPKYHSNTGAIDCAALSTKYFTNYCQLLKQNNSRSTQTATNQKGQLKP*SHGC 210
            T ++++N   Y S  G   C   S++   +Y  L   + ++S+   T Q   +   S  C
Sbjct: 1387 TTENYENPSSYDSTMGGSICGNGSSQNSCSYSNLTSSSLTQSSCAVTQQMSNI---SGSC 1443

Query: 211  SSYHEPSQTSYPWSAHRAWCGCAAHQEPCRSA-----------SPPHGHSWVPSTGSCS 354
            S   + S +S P  + ++  GC   + P  S            +PP   + +P TG+ +
Sbjct: 1444 SMLQQTSISSPPTCSVKSPQGCVVERPPSSSQQLAQCSMAANFTPPMQLAEIPETGNAN 1502

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>RL18E_METMP (Q6LXM7) 50S ribosomal protein L18e|
          Length = 120

 Score = 35.4 bits (80), Expect = 0.11
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 457 VTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILL 338
           V A  F+ETA++ I   GG+CLT ++L    P G    ++
Sbjct: 80  VAAFSFSETAKSAIEAVGGKCLTIEELIAENPKGSKVTIM 119

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>RL18E_ARCFU (O29138) 50S ribosomal protein L18e|
          Length = 117

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 463 MKVTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILL 338
           +KV AL F+E A ++I  AGG C+  ++L    P G    L+
Sbjct: 75  VKVAALSFSEKAASKIREAGGVCMKIEELLKENPKGSGVRLM 116

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>MYST4_MOUSE (Q8BRB7) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            4) (Querkopf protein)
          Length = 1872

 Score = 34.3 bits (77), Expect = 0.24
 Identities = 22/91 (24%), Positives = 40/91 (43%)
 Frame = +1

Query: 31   TVDSHKNLPKYHSNTGAIDCAALSTKYFTNYCQLLKQNNSRSTQTATNQKGQLKP*SHGC 210
            T ++++N   Y S  G   C   S++   +Y  L   N ++++   T Q   +   S  C
Sbjct: 1475 TTENYENPSSYDSTMGGSICGNGSSQNSCSYSSLTSSNLTQNSCAVTQQMSNI---SGSC 1531

Query: 211  SSYHEPSQTSYPWSAHRAWCGCAAHQEPCRS 303
            S   + S +S P  + ++  GC   + P  S
Sbjct: 1532 SMLQQTSISSPPTCSVKSPQGCVVERPPSSS 1562

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>MYST4_HUMAN (Q8WYB5) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            4) (Histone acetyltransferase MOZ2) (Monocytic leukemia
            zinc finger protein-related factor) (Histone
            acetyltransferas
          Length = 2073

 Score = 33.5 bits (75), Expect = 0.41
 Identities = 22/91 (24%), Positives = 40/91 (43%)
 Frame = +1

Query: 31   TVDSHKNLPKYHSNTGAIDCAALSTKYFTNYCQLLKQNNSRSTQTATNQKGQLKP*SHGC 210
            T ++++N   Y S  G   C   S++   +Y  L   + ++S+   T Q   +   S  C
Sbjct: 1676 TTENYENPSSYDSTMGGSICGNGSSQNSCSYSNLTSSSLTQSSCAVTQQMSNI---SGSC 1732

Query: 211  SSYHEPSQTSYPWSAHRAWCGCAAHQEPCRS 303
            S   + S +S P  + ++  GC   + P  S
Sbjct: 1733 SMLQQTSISSPPTCSVKSPQGCVVERPPSSS 1763

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>RL18E_METMA (Q8PW46) 50S ribosomal protein L18e|
          Length = 126

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = -3

Query: 457 VTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILLR 335
           V A+ F+E+A  +I  AGG+CL+ +++    P G    + R
Sbjct: 86  VAAVTFSESAVEKITEAGGKCLSVEEIMEANPKGSGIRIFR 126

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>RL18E_METAC (Q8TT44) 50S ribosomal protein L18e|
          Length = 126

 Score = 32.0 bits (71), Expect = 1.2
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 457 VTALRFTETARARIVNAGGECLTFDQLALRAPTGENTILLR 335
           + AL F+++A  +I  AGG+CL+ +++    P G    + R
Sbjct: 86  IAALTFSDSAFEKITEAGGKCLSLEEIMEANPKGSGIRIFR 126

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>IF2_BIFLO (Q8G3Y5) Translation initiation factor IF-2|
          Length = 954

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 26/82 (31%), Positives = 35/82 (42%)
 Frame = +1

Query: 172 NQKGQLKP*SHGCSSYHEPSQTSYPWSAHRAWCGCAAHQEPCRSASPPHGHSWVPSTGSC 351
           N KG  KP          P+  S P S   +    AA   P R ASP   H   P+ G+ 
Sbjct: 54  NAKGDSKP-----VQQRRPAAPSAPASTSSSAPTPAA---PARQASPASAHQQAPTPGAP 105

Query: 352 SPQLEHGEQAGQK*GTPHQH*Q 417
           +P+ + G + G    TP +H Q
Sbjct: 106 TPRPQGGARPGMP--TPGRHGQ 125

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>MURD_RHILO (Q98KB1) UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC|
           6.3.2.9) (UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
           synthetase) (D-glutamic acid-adding enzyme)
          Length = 466

 Score = 31.6 bits (70), Expect = 1.5
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 4/63 (6%)
 Frame = -3

Query: 433 TARARIVNAGGECLTFDQ----LALRAPTGENTILLRGPKNAREAVRHFGKAPGVPHSHT 266
           TARA ++  G + L +D     +A  A TG  T  LRG   A+ +   F  +PGVP +H 
Sbjct: 24  TARA-LIEGGAQVLAWDDNPDSVAKAAATGIATADLRGADWAKFSA--FVLSPGVPLTHP 80

Query: 265 KPY 257
           KP+
Sbjct: 81  KPH 83

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>HOXV_AZOVI (P40597) Hydrogenase expression/formation protein hoxV|
          Length = 348

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +3

Query: 192 TLKPRLFLLPRAFSNFLPLERT*GLVWLCGTPGALPKCLTASRAFLGPLNRIVFSPVGAR 371
           +++  L  L + +   +PLER   L+ LC    A  + LTA RA   P +  +   + A 
Sbjct: 95  SIRESLLRLVQVWELPVPLERLKALLALCRRAAARLQALTAFRAAPLPADAELEGTLAAL 154

Query: 372 RASWSKVRHSPPA 410
            A+W+ ++   PA
Sbjct: 155 AAAWADLQPPAPA 167

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>HUPK_AZOVI (P31878) Hydrogenase expression/formation protein hupK|
          Length = 342

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 21/73 (28%), Positives = 36/73 (49%)
 Frame = +3

Query: 192 TLKPRLFLLPRAFSNFLPLERT*GLVWLCGTPGALPKCLTASRAFLGPLNRIVFSPVGAR 371
           +++  L  L + +   +PLER   L+ LC    A  + LTA RA   P +  +   + A 
Sbjct: 89  SIRESLLRLVQVWELPVPLERLKALLALCRRAAARLQALTAFRAAPLPADAELEGTLAAL 148

Query: 372 RASWSKVRHSPPA 410
            A+W+ ++   PA
Sbjct: 149 AAAWADLQPPAPA 161

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>GYRB_MYXXA (O33367) DNA gyrase subunit B (EC 5.99.1.3)|
          Length = 815

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 38/151 (25%), Positives = 51/151 (33%), Gaps = 25/151 (16%)
 Frame = +1

Query: 10   LKXHKIKTVDSHKNLPKYHSNTGAIDCAALSTKYFTNYCQLLKQNNSR------------ 153
            L  + +K    H  +       G  +  AL  K  T   +L KQ   R            
Sbjct: 563  LNEYLLKIASEHARVLTPGGELGGAELKALLEKVITYEERLEKQAKRRDARVVDALVQGA 622

Query: 154  --STQTATNQ-------KGQLK-P*SHGCSSYHEPSQTSY---PWSAHRAWCGCAAHQEP 294
              S +T T +       +G+L  P S  C +      TS+   P +  R+WC      EP
Sbjct: 623  RLSAETLTGRGCPGGGGEGRLMTPSSAACRTCWAACATSWCRTPSTTPRSWCSTPTRMEP 682

Query: 295  CRSASPPHGHSWVPSTGSCSPQLEHGEQAGQ 387
            C             ST SC    EH   AGQ
Sbjct: 683  CGRRCSTTPSCRRRSTWSCRLCAEHLRGAGQ 713

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>RL18E_PYRAE (Q8ZYQ2) 50S ribosomal protein L18e|
          Length = 122

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -3

Query: 532 EEKNIAVVVGTITDDMRIQEIPAMKVTALRFTETARARIVNAGGECLTFDQLALRAPTG 356
           +E ++ VV G +    ++ +   + V A++ +  A  +++ AGGE LT  +L  + P G
Sbjct: 59  KEGDVVVVPGKLLAGGQLNK--KIIVAAVKISPKAARKVIEAGGEVLTIPELVRKYPRG 115

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>NPDC1_MOUSE (Q64322) Neural proliferation differentiation and control protein 1|
           precursor (NPDC-1 protein)
          Length = 332

 Score = 30.0 bits (66), Expect = 4.5
 Identities = 24/86 (27%), Positives = 32/86 (37%)
 Frame = +3

Query: 261 GLVWLCGTPGALPKCLTASRAFLGPLNRIVFSPVGARRASWSKVRHSPPALTILALAVSV 440
           GL    GT   +P    +SRA  GP+      P G         RH      +L LA  +
Sbjct: 149 GLPSTHGTSSPIPHTSLSSRASSGPVQMSPLEPQG---------RHGNGLTLVLILAFCL 199

Query: 441 NLRAVTFIAGISWIRMSSVIVPTTTA 518
              A   +A + W R+   I  T  A
Sbjct: 200 ASSAALAVAALCWCRLQREIRLTQKA 225

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>PHYK_MAIZE (Q2N2K4) Probable phytol kinase, chloroplast precursor (EC 2.7.-.-)|
          Length = 303

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 250 SAHRAWCGCAAHQEPCRSASPPHGHSWVPSTGS 348
           +A  AW G A+      S SPPH  +  PS GS
Sbjct: 2   AAAAAWTGAASPNSLLLSRSPPHAAALAPSPGS 34

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>PHYK2_SOYBN (Q2N2K2) Probable phytol kinase 2, chloroplast precursor (EC|
           2.7.-.-)
          Length = 292

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +1

Query: 250 SAHRAWCGCAAHQEPCRSASPPHGHSWVPSTGS 348
           +A  AW G A+      S SPPH  +  PS GS
Sbjct: 2   AAAAAWTGAASPNSLLLSRSPPHAAALAPSPGS 34

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>TIM50_YARLI (Q6CDV7) Import inner membrane translocase subunit TIM50,|
           mitochondrial precursor
          Length = 466

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 334 GPKNAREAVRHFGKAPGVPHSHTKP 260
           GPKN  EAV   G  P VP   T+P
Sbjct: 440 GPKNLSEAVSSIGSLPPVPQQPTEP 464

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>PACC_GIBFU (Q8J1U9) pH-response transcription factor pacC/RIM101|
          Length = 618

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 271 GCAAHQEPCRSASPPHGHSWVPSTGSCSPQLEHGEQA 381
           G  A   P  S S   GHS  PS+ + SPQ  HG  A
Sbjct: 416 GTPAVTPPSSSMSYTSGHSPSPSSSAMSPQSRHGSTA 452

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>PACC_GIBMO (Q873X0) pH-response transcription factor pacC/RIM101|
          Length = 613

 Score = 29.6 bits (65), Expect = 5.9
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = +1

Query: 271 GCAAHQEPCRSASPPHGHSWVPSTGSCSPQLEHGEQA 381
           G  A   P  S S   GHS  PS+ + SPQ  HG  A
Sbjct: 411 GTPAVTPPSSSMSYTSGHSPSPSSSAMSPQSRHGSTA 447

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>PACC_CEPAC (Q96X49) pH-response transcription factor pacC/RIM101|
          Length = 621

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 2/62 (3%)
 Frame = +1

Query: 205 GCSSYHEPSQTSYPWSAHRAWC--GCAAHQEPCRSASPPHGHSWVPSTGSCSPQLEHGEQ 378
           G   YH+P   +   S   A    G  A   P  + S   GHS  PS  + SPQ  H   
Sbjct: 380 GPDGYHQPVSAATMASPLTAMSSTGTPAVTPPSSAVSYTSGHSPSPSAPAMSPQSRHSST 439

Query: 379 AG 384
           +G
Sbjct: 440 SG 441

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>NRX3A_RAT (Q07310) Neurexin-3-alpha precursor (Neurexin III-alpha)|
          Length = 1578

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 365 STESKLVKSEALPTSIDNPCPRCLCEPQSGNLHCWDLLDPHVICDCA 505
           ++E +L+ S+++    + PC    CE  +G + C+ LLD H  CDC+
Sbjct: 183 NSEPRLLGSQSVQLEAEGPCGERPCE--NGGI-CF-LLDGHPTCDCS 225

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>NU214_DROME (Q9W1X4) Nuclear pore complex protein Nup214 (Nucleoporin Nup214)|
            (214 kDa nucleoporin) (DNup214)
          Length = 1711

 Score = 29.3 bits (64), Expect = 7.7
 Identities = 24/87 (27%), Positives = 37/87 (42%)
 Frame = +3

Query: 279  GTPGALPKCLTASRAFLGPLNRIVFSPVGARRASWSKVRHSPPALTILALAVSVNLRAVT 458
            GT  A+PK   +S A          +P G   A+ +K  +S P  T+ +   ++  +   
Sbjct: 1108 GTAAAVPKSEPSSTATTSVATSASTAPFGIFSAALAKPSNSEPITTVTSNTTTITSKPTN 1167

Query: 459  FIAGISWIRMSSVIVPTTTAMFFSSFP 539
             IA  S     S  V TT A+  S+ P
Sbjct: 1168 VIASSSVTDAPS--VTTTNAVTSSTDP 1192

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>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)|
          Length = 1776

 Score = 28.9 bits (63), Expect = 10.0
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 488  HADPRDPSNEGYRSEVHRDSEGKDCQCWW 402
            H+     SN    SE  R S+  DC CWW
Sbjct: 1000 HSSHPSSSNSRLESETTRLSKYIDCYCWW 1028


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,717,530
Number of Sequences: 219361
Number of extensions: 1609504
Number of successful extensions: 5482
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 5225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5474
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4430660157
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result