| Clone Name | rbaal2l22 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC123517.2| Oryza sativa japonica cultivar-group chromosome 11 clone OSJNBb0074K09, complete sequence Length = 135363 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Plus Query: 251 tgctccttgaagaagatggcgtagatgatgcagcagatgctgaagatgatgatgccgatg 310 |||||||||||||||| ||||||||||| |||| ||| || ||||||||||||||||||| Sbjct: 43796 tgctccttgaagaagacggcgtagatgaggcagaagacgcagaagatgatgatgccgatg 43855 Query: 311 tcgaacgtgagggcggtcatggcctggtcgctgagctccatgttcttcccgccaaggcga 370 |||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct: 43856 tcgatggtgagcgcggtcatggcctggtcgctgaggtccatgttgcggccgccgaggcgg 43915 Query: 371 tcgaccgtgtccggcacgggcttgtaattctggaggtcgagctcgtaggggtcctcgagg 430 |||||| |||| || |||| || ||| | | |||||| ||| ||||||||||||||| Sbjct: 43916 tcgaccatgtcggggacggactggtagctgtcgaggtcctgctggtaggggtcctcgagc 43975 Query: 431 cgggacctgagctgctg 447 | ||||| |||||||| Sbjct: 43976 ctggaccgcagctgctg 43992
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Plus Query: 251 tgctccttgaagaagatggcgtagatgatgcagcagatgctgaagatgatgatgccgatg 310 |||||||||||||||| ||||||||||| |||| ||| || ||||||||||||||||||| Sbjct: 5987713 tgctccttgaagaagacggcgtagatgaggcagaagacgcagaagatgatgatgccgatg 5987772 Query: 311 tcgaacgtgagggcggtcatggcctggtcgctgagctccatgttcttcccgccaaggcga 370 |||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct: 5987773 tcgatggtgagcgcggtcatggcctggtcgctgaggtccatgttgcggccgccgaggcgg 5987832 Query: 371 tcgaccgtgtccggcacgggcttgtaattctggaggtcgagctcgtaggggtcctcgagg 430 |||||| |||| || |||| || ||| | | |||||| ||| ||||||||||||||| Sbjct: 5987833 tcgaccatgtcggggacggactggtagctgtcgaggtcctgctggtaggggtcctcgagc 5987892 Query: 431 cgggacctgagctgctg 447 | ||||| |||||||| Sbjct: 5987893 ctggaccgcagctgctg 5987909
>dbj|AK059179.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-F11, full insert sequence Length = 1046 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Minus Query: 251 tgctccttgaagaagatggcgtagatgatgcagcagatgctgaagatgatgatgccgatg 310 |||||||||||||||| ||||||||||| |||| ||| || ||||||||||||||||||| Sbjct: 825 tgctccttgaagaagacggcgtagatgaggcagaagacgcagaagatgatgatgccgatg 766 Query: 311 tcgaacgtgagggcggtcatggcctggtcgctgagctccatgttcttcccgccaaggcga 370 |||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct: 765 tcgatggtgagcgcggtcatggcctggtcgctgaggtccatgttgcggccgccgaggcgg 706 Query: 371 tcgaccgtgtccggcacgggcttgtaattctggaggtcgagctcgtaggggtcctcgagg 430 |||||| |||| || |||| || ||| | | |||||| ||| ||||||||||||||| Sbjct: 705 tcgaccatgtcggggacggactggtagctgtcgaggtcctgctggtaggggtcctcgagc 646 Query: 431 cgggacctgagctgctg 447 | ||||| |||||||| Sbjct: 645 ctggaccgcagctgctg 629
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 145 bits (73), Expect = 2e-31 Identities = 166/197 (84%) Strand = Plus / Plus Query: 251 tgctccttgaagaagatggcgtagatgatgcagcagatgctgaagatgatgatgccgatg 310 |||||||||||||||| ||||||||||| |||| ||| || ||||||||||||||||||| Sbjct: 6054190 tgctccttgaagaagacggcgtagatgaggcagaagacgcagaagatgatgatgccgatg 6054249 Query: 311 tcgaacgtgagggcggtcatggcctggtcgctgagctccatgttcttcccgccaaggcga 370 |||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||| Sbjct: 6054250 tcgatggtgagcgcggtcatggcctggtcgctgaggtccatgttgcggccgccgaggcgg 6054309 Query: 371 tcgaccgtgtccggcacgggcttgtaattctggaggtcgagctcgtaggggtcctcgagg 430 |||||| |||| || |||| || ||| | | |||||| ||| ||||||||||||||| Sbjct: 6054310 tcgaccatgtcggggacggactggtagctgtcgaggtcctgctggtaggggtcctcgagc 6054369 Query: 431 cgggacctgagctgctg 447 | ||||| |||||||| Sbjct: 6054370 ctggaccgcagctgctg 6054386
>gb|AY108220.1| Zea mays PCO078021 mRNA sequence Length = 987 Score = 127 bits (64), Expect = 4e-26 Identities = 166/200 (83%) Strand = Plus / Minus Query: 251 tgctccttgaagaagatggcgtagatgatgcagcagatgctgaagatgatgatgccgatg 310 |||||||||||||| | || |||||||||||||||||| || ||||||||| |||| Sbjct: 769 tgctccttgaagaaaacagcatagatgatgcagcagatggagatgatgatgataacgata 710 Query: 311 tcgaacgtgagggcggtcatggcctggtcgctgagctccatgttcttcccgccaaggcga 370 |||| ||||| || ||||||||||| ||||| |||| ||||||||| ||||| ||||| Sbjct: 709 tcgatggtgagcgcagtcatggcctgatcgctaagcttcatgttcttgccgccgaggcgg 650 Query: 371 tcgaccgtgtccggcacgggcttgtaattctggaggtcgagctcgtaggggtcctcgagg 430 || ||| |||| |||||||| ||||| || || ||| ||||||| ||||||||||| Sbjct: 649 tcaaccatgtctggcacgggtttgtagttgatgatgtcctgctcgtatgggtcctcgagc 590 Query: 431 cgggacctgagctgctgcag 450 | |||||||||||||||||| Sbjct: 589 ctggacctgagctgctgcag 570
>ref|XM_479752.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1164 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 gaagatgatgatgccgatgtcg 313 |||||||||||||||||||||| Sbjct: 406 gaagatgatgatgccgatgtcg 385
>gb|AF165425.5| Homo sapiens chromosome 8 clone GS1-110c1 map q11.21, complete sequence Length = 108065 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 41 aaggtgaagagaacttctcaga 62 |||||||||||||||||||||| Sbjct: 44066 aaggtgaagagaacttctcaga 44087
>gb|AY551925.1| Oryza sativa (japonica cultivar-group) MADS-box protein RMADS220 mRNA, complete cds Length = 1059 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 gaagatgatgatgccgatgtcg 313 |||||||||||||||||||||| Sbjct: 265 gaagatgatgatgccgatgtcg 244
>gb|AF463407.1| Medicago truncatula Enod8.3 (Enod8.3) gene, partial cds; and Enod8.2 (Enod8.2) and Enod8.1 (Enod8.1) genes, complete cds Length = 12707 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 227 tcttctcttctcttctatcaat 248 |||||||||||||||||||||| Sbjct: 956 tcttctcttctcttctatcaat 935
>gb|AY115556.1| Oryza sativa (indica cultivar-group) MADS-box protein FDRMADS3 mRNA, complete cds Length = 1008 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 gaagatgatgatgccgatgtcg 313 |||||||||||||||||||||| Sbjct: 398 gaagatgatgatgccgatgtcg 377
>gb|AC139354.5| Medicago truncatula clone mth1-64n13, complete sequence Length = 114031 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 227 tcttctcttctcttctatcaat 248 |||||||||||||||||||||| Sbjct: 93767 tcttctcttctcttctatcaat 93788
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 gaagatgatgatgccgatgtcg 313 |||||||||||||||||||||| Sbjct: 673414 gaagatgatgatgccgatgtcg 673393
>gb|AC103958.11| Homo sapiens chromosome 8, clone GS1-110C1, complete sequence Length = 107642 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 41 aaggtgaagagaacttctcaga 62 |||||||||||||||||||||| Sbjct: 44065 aaggtgaagagaacttctcaga 44086
>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0498H04 Length = 151046 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 gaagatgatgatgccgatgtcg 313 |||||||||||||||||||||| Sbjct: 100792 gaagatgatgatgccgatgtcg 100771
>dbj|AK069122.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004P21, full insert sequence Length = 1164 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 gaagatgatgatgccgatgtcg 313 |||||||||||||||||||||| Sbjct: 406 gaagatgatgatgccgatgtcg 385
>gb|AF141868.1|AF141868 Oryza sativa MADS-box protein mRNA, partial cds Length = 721 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 gaagatgatgatgccgatgtcg 313 |||||||||||||||||||||| Sbjct: 111 gaagatgatgatgccgatgtcg 90
>dbj|AB003326.1| Oryza sativa (japonica cultivar-group) mRNA for MADS box-like protein, complete cds, clone:R3786 Length = 1109 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 292 gaagatgatgatgccgatgtcg 313 |||||||||||||||||||||| Sbjct: 374 gaagatgatgatgccgatgtcg 353
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 259 gaagaagatggcgtagatgatgcag 283 ||||||||||| ||||||||||||| Sbjct: 1167742 gaagaagatggggtagatgatgcag 1167766
>ref|XM_472904.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2676 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 274 gatgatgcagcagatgctgaagatgatgatgccgatg 310 |||||||||||||| | |||||||| ||||| ||||| Sbjct: 2509 gatgatgcagcagaggatgaagatggtgatgacgatg 2545
>gb|AE017351.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 11, complete sequence Length = 1019846 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 tgaagatgatgatgccgatgtcgaa 315 |||||||| |||||||||||||||| Sbjct: 292063 tgaagatggtgatgccgatgtcgaa 292039
>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome Length = 1827111 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 284 cagatgctgaagatgatgatg 304 ||||||||||||||||||||| Sbjct: 1030116 cagatgctgaagatgatgatg 1030096
>gb|DQ491001.1| Chlorella virus MT325 ctg_71 genomic sequence Length = 314335 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 286 gatgctgaagatgatgatgccgatg 310 |||| |||||||||||||||||||| Sbjct: 275638 gatgatgaagatgatgatgccgatg 275614
>gb|BT012801.1| Lycopersicon esculentum clone 113817F, mRNA sequence Length = 1606 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 gatgatgcagcagatgctgaagatgatga 302 ||||||| |||||||| |||||||||||| Sbjct: 1443 gatgatgaagcagatggtgaagatgatga 1471
>ref|XM_567656.1| Cryptococcus neoformans var. neoformans JEC21 DNA ligase (ATP) (CNK00930) partial mRNA Length = 3219 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 291 tgaagatgatgatgccgatgtcgaa 315 |||||||| |||||||||||||||| Sbjct: 2454 tgaagatggtgatgccgatgtcgaa 2478
>gb|AY358430.1| Homo sapiens clone DNA56045 ATGT502 (UNQ502) mRNA, complete cds Length = 1071 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 ccctcgtgccgcctcgtgccg 472 ||||||||||||||||||||| Sbjct: 34 ccctcgtgccgcctcgtgccg 14
>emb|BX032198.1|CNS08X0A Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA47DH07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 978 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 260 aagaagatggcgtagatgatg 280 ||||||||||||||||||||| Sbjct: 586 aagaagatggcgtagatgatg 606
>emb|BX028358.1|CNS08U1M Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA42BE07 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 796 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 260 aagaagatggcgtagatgatg 280 ||||||||||||||||||||| Sbjct: 772 aagaagatggcgtagatgatg 752
>gb|AC018950.9| Homo sapiens chromosome 15, clone RP11-200K22, complete sequence Length = 159729 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 249 attgctccttgaagaagatgg 269 ||||||||||||||||||||| Sbjct: 89102 attgctccttgaagaagatgg 89122
>gb|AC146756.17| Medicago truncatula clone mth2-15l17, complete sequence Length = 120437 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 79 tttttgacaaaattataggat 99 ||||||||||||||||||||| Sbjct: 8596 tttttgacaaaattataggat 8576
>dbj|AB225527.1| Aspergillus oryzae cDNA, contig sequence: AoEST2380 Length = 1085 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 ccctcgtgccgcctcgtgccg 472 ||||||||||||||||||||| Sbjct: 45 ccctcgtgccgcctcgtgccg 25 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 34 cctcgtgccgcctcgtgccg 15
>gb|AC093448.19| Mus musculus strain 129Sv/CJ7 clone ct7-304f1, complete sequence Length = 156382 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 cagcagatgctgaagatgatg 301 ||||||||||||||||||||| Sbjct: 134611 cagcagatgctgaagatgatg 134591
>emb|BX649487.7| Zebrafish DNA sequence from clone DKEY-148C4 in linkage group 9, complete sequence Length = 201933 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 tgatgcagcagatgctgaaga 296 ||||||||||||||||||||| Sbjct: 75860 tgatgcagcagatgctgaaga 75840
>dbj|AK068996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001A15, full insert sequence Length = 1208 Score = 42.1 bits (21), Expect = 1.6 Identities = 33/37 (89%) Strand = Plus / Plus Query: 274 gatgatgcagcagatgctgaagatgatgatgccgatg 310 |||||||||||||| | |||||||| ||||| ||||| Sbjct: 735 gatgatgcagcagaggatgaagatggtgatgacgatg 771
>emb|AL049835.3|CNS0000E Human chromosome 14 DNA sequence BAC R-862P13 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 187564 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 ctgtatgagacatataatctg 176 ||||||||||||||||||||| Sbjct: 107322 ctgtatgagacatataatctg 107342
>gb|AF053454.1|AF053454 Mus musculus tetraspan TM4SF (Tspan-6) mRNA, complete cds Length = 1058 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 452 ccctcgtgccgcctcgtgccg 472 ||||||||||||||||||||| Sbjct: 42 ccctcgtgccgcctcgtgccg 22
>emb|AL929144.10| Mouse DNA sequence from clone RP23-441D24 on chromosome 2, complete sequence Length = 82369 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 281 cagcagatgctgaagatgatg 301 ||||||||||||||||||||| Sbjct: 30650 cagcagatgctgaagatgatg 30630
>emb|AL672082.15| Mouse DNA sequence from clone RP23-67B21 on chromosome X, complete sequence Length = 243789 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 281 cagcagatgctgaagatgatg 301 ||||||||||||||||||||| Sbjct: 184560 cagcagatgctgaagatgatg 184580
>emb|AJ420561.1|HSA420561 Homo sapiens mRNA full length insert cDNA clone EUROIMAGE 1521079 Length = 968 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 451 cccctcgtgccgcctcgtgcc 471 ||||||||||||||||||||| Sbjct: 21 cccctcgtgccgcctcgtgcc 1
>ref|NM_201137.1| Danio rerio zgc:63907 (zgc:63907), mRNA Length = 1788 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 agatgctgaagatgatgatg 304 |||||||||||||||||||| Sbjct: 61 agatgctgaagatgatgatg 42
>ref|XM_638796.1| Dictyostelium discoideum hypothetical protein (DDB0217467), partial mRNA Length = 5517 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 agatgctgaagatgatgatg 304 |||||||||||||||||||| Sbjct: 2394 agatgctgaagatgatgatg 2375
>ref|XM_636480.1| Dictyostelium discoideum hypothetical protein (DDB0205957), partial mRNA Length = 1137 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 agatgctgaagatgatgatg 304 |||||||||||||||||||| Sbjct: 1035 agatgctgaagatgatgatg 1054
>ref|XM_630948.1| Dictyostelium discoideum hypothetical protein (DDB0219496), partial mRNA Length = 2601 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 273 agatgatgcagcagatgctgaagatgatgatg 304 |||||||| || ||||| |||||||||||||| Sbjct: 657 agatgatgaagaagatgatgaagatgatgatg 626
>gb|AC136702.19| Mus musculus chromosome 3, clone RP23-24N12, complete sequence Length = 209773 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 ctgagctccatgttcttccc 360 |||||||||||||||||||| Sbjct: 24221 ctgagctccatgttcttccc 24240
>ref|NM_204308.1| Gallus gallus amyloid beta (A4) precursor protein (peptidase nexin-II, Alzheimer disease) (APP), mRNA Length = 3081 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 281 cagcagatgctgaagatgatgatgccgatgtc 312 |||| |||||||||||||||||| | |||||| Sbjct: 701 cagctgatgctgaagatgatgattcagatgtc 732
>gb|AC105076.25| Mus musculus chromosome 3, clone RP23-258P2, complete sequence Length = 193458 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 gtttttgacaaaattatagg 97 |||||||||||||||||||| Sbjct: 38305 gtttttgacaaaattatagg 38324
>gb|AC125276.18| Mus musculus chromosome 10, clone RP24-175N4, complete sequence Length = 143671 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 agatgctgaagatgatgatg 304 |||||||||||||||||||| Sbjct: 67856 agatgctgaagatgatgatg 67837 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 agatgctgaagatgatgatg 304 |||||||||||||||||||| Sbjct: 67820 agatgctgaagatgatgatg 67801
>gb|AC007852.9| Drosophila melanogaster clone BACR33A10, complete sequence Length = 186333 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 288 tgctgaagatgatgatgccgatgt 311 |||||| ||||||||||||||||| Sbjct: 62717 tgctgatgatgatgatgccgatgt 62740
>gb|AC007588.5| Drosophila melanogaster clone BACR30O03, complete sequence Length = 165177 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 tgctgaagatgatgatgccgatgt 311 |||||| ||||||||||||||||| Sbjct: 9716 tgctgatgatgatgatgccgatgt 9693
>ref|XM_425609.1| PREDICTED: Gallus gallus LOC428045 (LOC428045), mRNA Length = 1593 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 atgatgcagcagatgctgaa 294 |||||||||||||||||||| Sbjct: 1570 atgatgcagcagatgctgaa 1589
>gb|BC053142.1| Danio rerio zgc:63907, mRNA (cDNA clone MGC:63907 IMAGE:6790266), complete cds Length = 1788 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 285 agatgctgaagatgatgatg 304 |||||||||||||||||||| Sbjct: 61 agatgctgaagatgatgatg 42
>gb|AE017261.1| Picrophilus torridus DSM 9790, complete genome Length = 1545895 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 282 agcagatgctgaagatgatgatgc 305 ||||||||| |||||||||||||| Sbjct: 685274 agcagatgcagaagatgatgatgc 685297
>ref|XM_452382.1| Kluyveromyces lactis NRRL Y-1140, KLLA0C04147g predicted mRNA Length = 3723 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 273 agatgatgcagcagatgctgaagatgatgatg 304 ||||||||||| ||||| |||||| ||||||| Sbjct: 1566 agatgatgcagaagatgatgaagacgatgatg 1597
>gb|AY523941.1| Anas platyrhynchos cyclin-dependent kinase inhibitor p27 Kip1 mRNA, complete cds Length = 803 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 452 ccctcgtgccgcctcgtgcc 471 |||||||||||||||||||| Sbjct: 20 ccctcgtgccgcctcgtgcc 1
>gb|AY189286.1| Homo sapiens LP5910 protein mRNA, complete cds Length = 3260 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 2185 cctcgtgccgcctcgtgccg 2166
>emb|BX927105.10| Zebrafish DNA sequence from clone DKEY-40F3 in linkage group 23, complete sequence Length = 52600 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gatgcagcagatgctgaaga 296 |||||||||||||||||||| Sbjct: 14559 gatgcagcagatgctgaaga 14540
>gb|AC121566.3| Mus musculus BAC clone RP23-225D10 from 1, complete sequence Length = 152435 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 agtatcttctcttctcttct 242 |||||||||||||||||||| Sbjct: 56685 agtatcttctcttctcttct 56666
>gb|AF398650.1| Lachnophorus elegantulus 28S large subunit ribosomal RNA gene, partial sequence Length = 1081 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ctttaggtttatatatatac 27 |||||||||||||||||||| Sbjct: 149 ctttaggtttatatatatac 168
>ref|XM_722050.1| Plasmodium yoelii yoelii str. 17XNL ATPase class II type 9A (PY06483) partial mRNA Length = 4272 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 273 agatgatgcagcagatgctgaagatgatgatg 304 |||||||| || ||||| |||||||||||||| Sbjct: 1029 agatgatgaagaagatgatgaagatgatgatg 1060
>gb|AF289219.1| Gallus gallus beta-amyloid precursor protein 751 isoform mRNA, complete cds Length = 3081 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 281 cagcagatgctgaagatgatgatgccgatgtc 312 |||| |||||||||||||||||| | |||||| Sbjct: 701 cagctgatgctgaagatgatgattcagatgtc 732
>gb|AF289218.1| Gallus gallus beta-amyloid precursor protein 695 isoform mRNA, complete cds Length = 2913 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 281 cagcagatgctgaagatgatgatgccgatgtc 312 |||| |||||||||||||||||| | |||||| Sbjct: 701 cagctgatgctgaagatgatgattcagatgtc 732
>gb|AC130276.2| Homo sapiens chromosome 3 clone RP11-1076P5, complete sequence Length = 74595 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 gtttatatatatacttgttg 33 |||||||||||||||||||| Sbjct: 14641 gtttatatatatacttgttg 14622
>emb|CR382123.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome C of strain NRRL Y-1140 of Kluyveromyces lactis Length = 1753957 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Minus Query: 273 agatgatgcagcagatgctgaagatgatgatg 304 ||||||||||| ||||| |||||| ||||||| Sbjct: 379342 agatgatgcagaagatgatgaagacgatgatg 379311
>emb|BX927176.8| Zebrafish DNA sequence from clone DKEY-24E16 in linkage group 23, complete sequence Length = 81744 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gatgcagcagatgctgaaga 296 |||||||||||||||||||| Sbjct: 14559 gatgcagcagatgctgaaga 14540
>gb|AC165428.1| Strongylocentrotus purpuratus BAC clone contig containing Eve, the hox cluster, cholinesterase, and COLP5alpha genes, complete sequence Length = 796348 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 291 tgaagatgatgatgccgatg 310 |||||||||||||||||||| Sbjct: 688301 tgaagatgatgatgccgatg 688282
>dbj|AB229152.1| Aspergillus oryzae cDNA, contig sequence: AoEST6030 Length = 425 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 20 cctcgtgccgcctcgtgccg 1
>dbj|AB228634.1| Aspergillus oryzae cDNA, contig sequence: AoEST5507 Length = 891 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 34 cctcgtgccgcctcgtgccg 15
>dbj|AB228286.1| Aspergillus oryzae cDNA, contig sequence: AoEST5159 Length = 503 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 20 cctcgtgccgcctcgtgccg 1
>dbj|AB226304.1| Aspergillus oryzae cDNA, contig sequence: AoEST3166 Length = 1214 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 25 cctcgtgccgcctcgtgccg 6
>dbj|AB226153.1| Aspergillus oryzae cDNA, contig sequence: AoEST3011 Length = 704 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 34 cctcgtgccgcctcgtgccg 15
>dbj|AB226023.1| Aspergillus oryzae cDNA, contig sequence: AoEST2879 Length = 944 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 75 cctcgtgccgcctcgtgccg 56
>dbj|AB225571.1| Aspergillus oryzae cDNA, contig sequence: AoEST2426 Length = 1361 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 1328 cctcgtgccgcctcgtgccg 1347
>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023 Length = 2661830 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 gatgatgcagcagatgctga 293 |||||||||||||||||||| Sbjct: 2192020 gatgatgcagcagatgctga 2192001
>ref|NM_164677.1| Drosophila melanogaster slowmo CG9131-RA, transcript variant A (slmo), mRNA Length = 1288 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 actttaggtttatatatata 26 |||||||||||||||||||| Sbjct: 1209 actttaggtttatatatata 1190
>ref|NM_079966.2| Drosophila melanogaster slowmo CG9131-RB, transcript variant B (slmo), mRNA Length = 1169 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 actttaggtttatatatata 26 |||||||||||||||||||| Sbjct: 1090 actttaggtttatatatata 1071
>gb|AC074044.8| Homo sapiens 3q BAC RP11-484K9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 194006 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 tataggattgttgagataat 111 |||||||||||||||||||| Sbjct: 152088 tataggattgttgagataat 152069
>gb|AY051484.1| Drosophila melanogaster GH14384 full length cDNA Length = 1261 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 actttaggtttatatatata 26 |||||||||||||||||||| Sbjct: 1162 actttaggtttatatatata 1143
>gb|AF042098.1|AF042098 Gallus gallus amyloid precursor protein mRNA, partial cds Length = 2338 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 281 cagcagatgctgaagatgatgatgccgatgtc 312 |||| |||||||||||||||||| | |||||| Sbjct: 110 cagctgatgctgaagatgatgattcagatgtc 141
>gb|AC092216.1|AC092216 Drosophila melanogaster, chromosome 2L, region 25F-26A, BAC clone BACR10M11, complete sequence Length = 174832 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 actttaggtttatatatata 26 |||||||||||||||||||| Sbjct: 103684 actttaggtttatatatata 103665
>gb|BC032986.1| Mus musculus superoxide dismutase 1, soluble, mRNA (cDNA clone IMAGE:1313787) Length = 698 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 20 cctcgtgccgcctcgtgccg 1
>emb|AL114979.1|CNS01C23 Botrytis cinerea strain T4 cDNA library Length = 600 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 1 cctcgtgccgcctcgtgccg 20
>emb|AL114418.1|CNS01BMI Botrytis cinerea strain T4 cDNA library Length = 696 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 228 cctcgtgccgcctcgtgccg 209
>gb|AC116986.2| Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence Length = 333321 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 285 agatgctgaagatgatgatg 304 |||||||||||||||||||| Sbjct: 290936 agatgctgaagatgatgatg 290955
>gb|AC084644.1|CBRG45L10 Caenorhabditis briggsae cosmid G45L10, complete sequence Length = 46749 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 tcttctcttctcttctatca 246 |||||||||||||||||||| Sbjct: 4353 tcttctcttctcttctatca 4334
>gb|AC084585.1|CBRG41C07 Caenorhabditis briggsae cosmid G41C07, complete sequence Length = 35417 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 tcttctcttctcttctatca 246 |||||||||||||||||||| Sbjct: 541 tcttctcttctcttctatca 522
>gb|AF204172.1|AF204172 Homo sapiens clone IMAGE:298343 popeye protein 1 (POP1) mRNA, complete cds Length = 1687 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 1663 cctcgtgccgcctcgtgccg 1682
>gb|AE000792.1| Borrelia burgdorferi B31 plasmid cp26, complete sequence Length = 26498 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 81 tttgacaaaattataggatt 100 |||||||||||||||||||| Sbjct: 2972 tttgacaaaattataggatt 2991
>dbj|AB110643.1| Streptomyces thermoviolaceus stxIV, stxI genes for alpha-L-arabinofuranosidase, xylanase I complete cds Length = 3642 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 agatgatgcagcagatgctg 292 |||||||||||||||||||| Sbjct: 222 agatgatgcagcagatgctg 241
>gb|AF030341.1|AF030341 Gallus gallus amyloid protein precursor (APP) mRNA, partial cds Length = 2417 Score = 40.1 bits (20), Expect = 6.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 281 cagcagatgctgaagatgatgatgccgatgtc 312 |||| |||||||||||||||||| | |||||| Sbjct: 218 cagctgatgctgaagatgatgattcagatgtc 249
>gb|AE003612.2| Drosophila melanogaster chromosome 2L, section 21 of 83 of the complete sequence Length = 260673 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 actttaggtttatatatata 26 |||||||||||||||||||| Sbjct: 90395 actttaggtttatatatata 90414
>gb|AE003816.4| Drosophila melanogaster chromosome 2R, section 34 of 73 of the complete sequence Length = 287287 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 288 tgctgaagatgatgatgccgatgt 311 |||||| ||||||||||||||||| Sbjct: 267804 tgctgatgatgatgatgccgatgt 267781
>dbj|AB072915.2| Malus x domestica MdSPDS1 mRNA forspermidine synthase, complete cds Length = 1407 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 cctcgtgccgcctcgtgccg 472 |||||||||||||||||||| Sbjct: 35 cctcgtgccgcctcgtgccg 16
>emb|Z48958.1|ACEG1PSEU A.caulinodans egl pseudogene Length = 6004 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 273 agatgatgcagcagatgctg 292 |||||||||||||||||||| Sbjct: 4217 agatgatgcagcagatgctg 4236
>gb|AC004758.1|AC004758 Drosophila melanogaster DNA sequence (P1s DS06106 (D123), DS05973 (D122), and DS08584 (D118)), complete sequence Length = 174311 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 7 actttaggtttatatatata 26 |||||||||||||||||||| Sbjct: 43396 actttaggtttatatatata 43377
>emb|AL731854.18| Mouse DNA sequence from clone RP23-120A20 on chromosome 2, complete sequence Length = 208762 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 tagtatcttctcttctcttc 241 |||||||||||||||||||| Sbjct: 15196 tagtatcttctcttctcttc 15177 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,097,481 Number of Sequences: 3902068 Number of extensions: 5097481 Number of successful extensions: 206765 Number of sequences better than 10.0: 94 Number of HSP's better than 10.0 without gapping: 94 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 206293 Number of HSP's gapped (non-prelim): 467 length of query: 472 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 450 effective length of database: 17,147,199,772 effective search space: 7716239897400 effective search space used: 7716239897400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)