| Clone Name | rbaal3a20 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC073193.10| Homo sapiens BAC clone RP11-175C14 from 7, complete sequence Length = 120436 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 224 aaagaggagatgttacacagtg 245 |||||||||||||||||||||| Sbjct: 56375 aaagaggagatgttacacagtg 56396
>gb|AC104831.3| Homo sapiens 3 BAC RP11-451G4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 115000 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 102 gaaaatatatttctttgttgcc 123 |||||||||||||||||||||| Sbjct: 14453 gaaaatatatttctttgttgcc 14474
>gb|AE017132.1| Yersinia pestis biovar Medievalis str. 91001 section 6 of 16 of the complete genome Length = 290155 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 tatgtagtgcaaatagtacaa 63 ||||||||||||||||||||| Sbjct: 193910 tatgtagtgcaaatagtacaa 193930
>gb|AC110381.5| Mus musculus BAC clone RP24-198I16 from chromosome 10, complete sequence Length = 166554 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 140 atgatggtgatctctgtgata 160 ||||||||||||||||||||| Sbjct: 6279 atgatggtgatctctgtgata 6299
>gb|AE009952.1| Yersinia pestis KIM, complete genome Length = 4600755 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 43 tatgtagtgcaaatagtacaa 63 ||||||||||||||||||||| Sbjct: 2824793 tatgtagtgcaaatagtacaa 2824773
>gb|AC159503.10| Mus musculus 10 BAC RP24-293I2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 199258 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 atgatggtgatctctgtgata 160 ||||||||||||||||||||| Sbjct: 17097 atgatggtgatctctgtgata 17077
>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence Length = 4744671 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 tatgtagtgcaaatagtacaa 63 ||||||||||||||||||||| Sbjct: 1973815 tatgtagtgcaaatagtacaa 1973835
>emb|AJ414150.1| Yersinia pestis strain CO92 complete genome; segment 10/20 Length = 335050 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 tatgtagtgcaaatagtacaa 63 ||||||||||||||||||||| Sbjct: 58964 tatgtagtgcaaatagtacaa 58984
>gb|AC104114.2| Homo sapiens chromosome 5 clone RP11-238E17, complete sequence Length = 31041 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 96 gaaaaggaaaatatatttctttgtt 120 ||||||| ||||||||||||||||| Sbjct: 25121 gaaaaggcaaatatatttctttgtt 25097
>gb|AC140372.3| Mus musculus BAC clone RP23-185B17 from chromosome 3, complete sequence Length = 180084 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 atctgatgatggtgatctctg 155 ||||||||||||||||||||| Sbjct: 20939 atctgatgatggtgatctctg 20959
>gb|AC136590.2| Homo sapiens chromosome 5 clone CTD-2312G21, complete sequence Length = 301479 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 96 gaaaaggaaaatatatttctttgtt 120 ||||||| ||||||||||||||||| Sbjct: 70194 gaaaaggcaaatatatttctttgtt 70170
>gb|AC137551.1| Homo sapiens chromosome 5 clone RP11-867C24, complete sequence Length = 183535 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 96 gaaaaggaaaatatatttctttgtt 120 ||||||| ||||||||||||||||| Sbjct: 82216 gaaaaggcaaatatatttctttgtt 82240
>emb|BX005405.11| Zebrafish DNA sequence from clone DKEY-19I22 in linkage group 20, complete sequence Length = 62329 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 gacaatggtaaaacaaaaaag 227 ||||||||||||||||||||| Sbjct: 4808 gacaatggtaaaacaaaaaag 4828
>emb|BX470148.15| Zebrafish DNA sequence from clone CH211-198A16 in linkage group 20, complete sequence Length = 64300 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 207 gacaatggtaaaacaaaaaag 227 ||||||||||||||||||||| Sbjct: 59493 gacaatggtaaaacaaaaaag 59473
>gb|AC119291.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052K01, complete sequence Length = 144395 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 taaaacaaaaaagaggagat 234 |||||||||||||||||||| Sbjct: 50754 taaaacaaaaaagaggagat 50735
>gb|AC114459.6| Rattus norvegicus 4 BAC CH230-388N23 (Children's Hospital Oakland Research Institute) complete sequence Length = 190345 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 94 tggaaaaggaaaatatatttcttt 117 ||||||||||||| |||||||||| Sbjct: 132661 tggaaaaggaaaaaatatttcttt 132684
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 gtgatacaacgtatggcttg 174 |||||||||||||||||||| Sbjct: 35475891 gtgatacaacgtatggcttg 35475910
>ref|XM_720329.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05025) partial mRNA Length = 120 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 aaaaggaaaatatatttctt 116 |||||||||||||||||||| Sbjct: 83 aaaaggaaaatatatttctt 102
>gb|AC111647.10| Rattus norvegicus 4 BAC CH230-103E9 (Children's Hospital Oakland Research Institute) complete sequence Length = 232538 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 94 tggaaaaggaaaatatatttcttt 117 ||||||||||||| |||||||||| Sbjct: 196776 tggaaaaggaaaaaatatttcttt 196753
>emb|CR545472.6| Zebrafish DNA sequence from clone DKEYP-32B1 in linkage group 5, complete sequence Length = 75199 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 aggaaaatatatttctttgt 119 |||||||||||||||||||| Sbjct: 63100 aggaaaatatatttctttgt 63081
>gb|AC092829.4| Homo sapiens 12 BAC RP11-165P7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 116783 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggaaaaggaaaatatatttc 114 |||||||||||||||||||| Sbjct: 24951 ggaaaaggaaaatatatttc 24932
>gb|AC023886.7| Homo sapiens BAC clone RP11-402J6 from 4, complete sequence Length = 179697 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 103 aaaatatatttctttgttgc 122 |||||||||||||||||||| Sbjct: 137261 aaaatatatttctttgttgc 137242
>gb|AC023394.11| Homo sapiens chromosome 18, clone RP11-389J22, complete sequence Length = 158050 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 aaaagaggagatgttacaca 242 |||||||||||||||||||| Sbjct: 78709 aaaagaggagatgttacaca 78728
>ref|XM_677933.1| PREDICTED: Danio rerio hypothetical protein LOC555433 (LOC555433), mRNA Length = 2460 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 135 atctgatgatggtgatctctgtga 158 ||||| |||||||||||||||||| Sbjct: 328 atctgctgatggtgatctctgtga 305
>gb|AC009459.6| Drosophila melanogaster, chromosome 2R, region 57E-57F, BAC clone BACR34C17, complete sequence Length = 167447 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 actggaaaaggaaaatatat 111 |||||||||||||||||||| Sbjct: 155905 actggaaaaggaaaatatat 155886
>gb|AC007803.7|AC007803 Drosophila melanogaster, chromosome 2R, region 58A1-58A2, BAC clone BACR13F14, complete sequence Length = 198244 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 actggaaaaggaaaatatat 111 |||||||||||||||||||| Sbjct: 145562 actggaaaaggaaaatatat 145581
>gb|AC009912.5|AC009912 Drosophila melanogaster, chromosome 2R, region 57F-58A, BAC clone BACR46G10, complete sequence Length = 165158 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 actggaaaaggaaaatatat 111 |||||||||||||||||||| Sbjct: 117334 actggaaaaggaaaatatat 117315
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tggaaaaggaaaatatattt 113 |||||||||||||||||||| Sbjct: 4577064 tggaaaaggaaaatatattt 4577045
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 215 taaaacaaaaaagaggagat 234 |||||||||||||||||||| Sbjct: 26537279 taaaacaaaaaagaggagat 26537260
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 gtgatacaacgtatggcttg 174 |||||||||||||||||||| Sbjct: 35565963 gtgatacaacgtatggcttg 35565982
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 gaaaggcacctatgcaacgcaaac 203 ||||||||| |||||||||||||| Sbjct: 21557516 gaaaggcacatatgcaacgcaaac 21557493
>gb|AC092453.10| Homo sapiens 12 BAC RP11-130L11 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160984 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 ggaaaaggaaaatatatttc 114 |||||||||||||||||||| Sbjct: 22894 ggaaaaggaaaatatatttc 22875
>gb|AC092559.4| Oryza sativa chromosome 3 BAC OSJNBb0096M04 genomic sequence, complete sequence Length = 133846 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 gtgatacaacgtatggcttg 174 |||||||||||||||||||| Sbjct: 11735 gtgatacaacgtatggcttg 11716
>gb|AC096688.4| Oryza sativa chromosome 3 BAC OSJNBa0015N08 genomic sequence, complete sequence Length = 145290 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 gtgatacaacgtatggcttg 174 |||||||||||||||||||| Sbjct: 8854 gtgatacaacgtatggcttg 8873
>dbj|AP003753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1339_B08 Length = 119212 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tggaaaaggaaaatatattt 113 |||||||||||||||||||| Sbjct: 42404 tggaaaaggaaaatatattt 42385
>dbj|AP003342.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0049O23 Length = 121038 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 gaaaggcacctatgcaacgcaaac 203 ||||||||| |||||||||||||| Sbjct: 51055 gaaaggcacatatgcaacgcaaac 51032
>dbj|AP003296.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0697C12 Length = 149098 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 180 gaaaggcacctatgcaacgcaaac 203 ||||||||| |||||||||||||| Sbjct: 14069 gaaaggcacatatgcaacgcaaac 14046
>emb|AL954182.18| Zebrafish DNA sequence from clone CH211-205N18 in linkage group 20, complete sequence Length = 151552 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 135 atctgatgatggtgatctctgtga 158 ||||| |||||||||||||||||| Sbjct: 37242 atctgctgatggtgatctctgtga 37265
>gb|AE003454.3| Drosophila melanogaster chromosome 2R, section 62 of 73 of the complete sequence Length = 313634 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 actggaaaaggaaaatatat 111 |||||||||||||||||||| Sbjct: 306441 actggaaaaggaaaatatat 306422
>emb|AL845264.18| Mouse DNA sequence from clone RP23-116F18 on chromosome 2, complete sequence Length = 207724 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 gcaaatagtacaagatatat 70 |||||||||||||||||||| Sbjct: 46145 gcaaatagtacaagatatat 46126
>emb|AL732625.8| Mouse DNA sequence from clone RP23-169H17 on chromosome 2, complete sequence Length = 224038 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 97 aaaaggaaaatatatttctt 116 |||||||||||||||||||| Sbjct: 36068 aaaaggaaaatatatttctt 36087
>dbj|AP001207.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1562D12 Length = 153936 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tggaaaaggaaaatatattt 113 |||||||||||||||||||| Sbjct: 52381 tggaaaaggaaaatatattt 52362 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,668,354 Number of Sequences: 3902068 Number of extensions: 3668354 Number of successful extensions: 91425 Number of sequences better than 10.0: 42 Number of HSP's better than 10.0 without gapping: 42 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 91268 Number of HSP's gapped (non-prelim): 157 length of query: 253 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 231 effective length of database: 17,147,199,772 effective search space: 3961003147332 effective search space used: 3961003147332 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)