>FMT_STRR6 (Q8DNR7) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 311

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
 Frame = -2

Query: 562 LLSLMIHYASNPMLPQP--LSNVTFIVKLPVDPTLLNVSP--KAVLNRAERELRWHISDI 395
           LL  +  Y +  + P+P   S VTF   +  +   LN +   + + N+      W ++  
Sbjct: 177 LLDTLPAYIAGDIKPEPQDTSQVTFSPNIKSEEEKLNWNKTNRQLFNQIRGMNPWPVAHT 236

Query: 394 PLKGPAGRLRARMPVDQDSKDGELEVVG---MVKFAYQGPFTLSGIKLC--PAINSTAQF 230
            LKG   ++   +PV+     GE+  +G   ++    +G  +L  ++    P ++  +  
Sbjct: 237 FLKGDRFKIYEALPVEGQGNPGEILSIGKKELIVATAEGALSLKQVQPAGKPKMDIASFL 296

Query: 229 NEVGHTFSSG 200
           N VG T + G
Sbjct: 297 NGVGRTLTVG 306

>FMT_STRPN (Q97PA6) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 311

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 29/130 (22%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
 Frame = -2

Query: 562 LLSLMIHYASNPMLPQP--LSNVTFIVKLPVDPTLL--NVSPKAVLNRAERELRWHISDI 395
           LL  +  Y +  + P+P   S VTF   +  +   L  N + + + N+      W ++  
Sbjct: 177 LLDTLPAYIAGDIKPEPQDTSQVTFSPNIKPEEEKLDWNKTNRQLFNQIRGMNPWPVAHT 236

Query: 394 PLKGPAGRLRARMPVDQDSKDGELEVVG---MVKFAYQGPFTLSGIKLC--PAINSTAQF 230
            LKG   ++   +PV+     GE+  +G   ++    +G  +L  ++    P ++  +  
Sbjct: 237 FLKGDRFKIYEALPVEGQGNPGEILSIGKKELIVATAEGALSLKQVQPAGKPKMDIASFL 296

Query: 229 NEVGHTFSSG 200
           N VG T + G
Sbjct: 297 NGVGRTLTVG 306

>DCHS_DROME (Q05733) Histidine decarboxylase (EC 4.1.1.22) (HDC)|
          Length = 847

 Score = 32.7 bits (73), Expect = 0.95
 Identities = 24/77 (31%), Positives = 34/77 (44%)
 Frame = -3

Query: 354 P*TRTPKMVNWRLLEWSSLLTKGHSHCLASSSAQPSIALPSLMKLATPSPAGATVASELV 175
           P   +P+  +W    +S LL + +S    S     S    SL   ATP+P   +   ELV
Sbjct: 743 PTRESPEDPDWPAKTFSQLLLERYSSQSQSLGNNSSTESSSLSGGATPTPTPMSSLDELV 802

Query: 174 TWYLLCIVAVTLPFFSA 124
           T  LL   + + P  SA
Sbjct: 803 TPLLLSFASPSQPMLSA 819

>SYA_RHOBA (Q7UFH9) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)|
           (AlaRS)
          Length = 945

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 34/138 (24%), Positives = 49/138 (35%), Gaps = 6/138 (4%)
 Frame = +2

Query: 5   ETCKDCVPLMNNXT--RKHDLSSSLTKRIRTNMNFTPCCLKQAEKKGKVTATIQRRYQVT 178
           ETC   V + N     R H  +  L   + T++       + AE++G      + R+  T
Sbjct: 546 ETCTAKVDVENRTALARAHSATHILHHALHTHVG------RHAEQQGSKVEPDRLRFDFT 599

Query: 179 N----SDATVAPAGEGVANFIKLGSAIDGWAELDARQCEWPLVSKLDHSNNLQFTIFGVL 346
           N     D T+    + V   +  G  I            W  VS  D        +FG  
Sbjct: 600 NPKAIDDETLVKIEQDVLGMVGKGDEI-----------RWDTVSLADAREAGAMMLFGEK 648

Query: 347 VYGHPCSQPSSGTFQRNV 400
            Y  PC   S GTF R +
Sbjct: 649 -YPDPCRMVSMGTFSREL 665

>PURL_PROAC (Q6A6C0) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)|
           (FGAM synthase II)
          Length = 750

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
 Frame = +2

Query: 215 VANFIKLGSAIDGWAELDARQCEWPLVSKL--DHSNNLQFTIFGVLVYGHPCSQPSSGTF 388
           V N +        WAEL     E+  + ++        +  ++ V+   H CS  SS  +
Sbjct: 5   VENAVSTPDVEQPWAELGLSADEYQRIREILGRRPTGGELAMYSVMWSEH-CSYKSSKKY 63

Query: 389 QRNV*DVPPELPLCPVQHGLGRN 457
            R   D+P + PL P+  G+G N
Sbjct: 64  LRRFGDLPQQTPLGPLLAGIGDN 86

>PHNM_ECOLI (P16689) Protein phnM|
          Length = 378

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = -2

Query: 622 LPKHSPLPLRMRLVKRHSGTLLSLMIH 542
           LP H+ LPL  +LV+R   TL+SLM H
Sbjct: 139 LPHHTTLPLFEKLVQREPVTLVSLMDH 165

>UVRA_PSEAE (Q9HWG0) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 945

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
 Frame = +2

Query: 290 LVSKLDHSNNLQFTIFGVL----VYGHPCSQPSSGTFQRNV*DVPPELPLCPVQHGLGRN 457
           LV+ +D   +++  IF       V GH  S+     F  N          CP   GLG  
Sbjct: 233 LVAPMDEDEDVEEIIFSARFACPVCGHSISELEPKLFSFN-----NPAGACPTCDGLG-- 285

Query: 458 IKQSWIHRKL-NNECNIAQWLRQHWVRRVVYH 550
           +KQ +  R++ N E  +A+   + W RR VY+
Sbjct: 286 VKQFFDARRVVNGELTLAEGAIRGWDRRNVYY 317


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,114,505
Number of Sequences: 219361
Number of extensions: 1945900
Number of successful extensions: 6436
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6436
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6086476506
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)