Clone Information

BLAST Search Result

Clone Name	rbaal2l20
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_480940.1\| Oryza sativa (japonica cultivar-group), mRNA	472	e-130
2	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	472	e-130
3	dbj\|AP004690.3\| Oryza sativa (japonica cultivar-group) genomic D...	472	e-130
4	dbj\|AP005478.3\| Oryza sativa (japonica cultivar-group) genomic D...	472	e-130
5	dbj\|AK121452.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	472	e-130
6	dbj\|AK102707.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	472	e-130
7	gb\|AY105218.1\| Zea mays PCO148558 mRNA sequence	400	e-108
8	ref\|XM_695823.1\| PREDICTED: Danio rerio similar to fibrillin 2 p...	44	0.57
9	gb\|AC115124.6\| Mus musculus BAC clone RP24-349M22 from chromosom...	42	2.2
10	gb\|AC127368.3\| Mus musculus BAC clone RP23-22J14 from chromosome...	42	2.2
11	emb\|AL606902.26\| Mouse DNA sequence from clone RP23-167A12 on ch...	42	2.2
12	gb\|DQ242512.1\| Neurospora crassa CSN-4 (NCU07361) mRNA, complete...	40	8.8
13	gb\|AC169385.2\| Mus musculus BAC clone RP23-247C1 from chromosome...	40	8.8
14	ref\|XM_953041.1\| Neurospora crassa OR74A hypothetical protein (N...	40	8.8
15	ref\|XM_327646.1\| Neurospora crassa OR74A hypothetical protein (N...	40	8.8
16	emb\|BX295539.1\|NCB1D14 Neurospora crassa genomic DNA, BAC contig...	40	8.8
17	gb\|AC154606.2\| Mus musculus BAC clone RP23-252E10 from chromosom...	40	8.8
18	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.8
19	gb\|AC097377.3\| Homo sapiens BAC clone RP11-83F13 from 2, complet...	40	8.8
20	dbj\|AP003260.5\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.8
21	dbj\|AP003247.4\| Oryza sativa (japonica cultivar-group) genomic D...	40	8.8
22	emb\|BX005372.6\| Zebrafish DNA sequence from clone DKEY-76K16, co...	40	8.8
23	dbj\|AB084378.1\| Euphausia superba mitochondrial DNA, trnM to rrn...	40	8.8

>ref|XM_480940.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2141

 Score =  472 bits (238), Expect = e-130
 Identities = 394/446 (88%)
 Strand = Plus / Minus

                                                                        
Query: 198  ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 257
            ||||| |||||||||||||||||| | ||||||||||| || |||| ||   ||||||||
Sbjct: 1980 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 1921

                                                                        
Query: 258  cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 317
            || || ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 1920 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 1861

                                                                        
Query: 318  acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 377
            ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| ||||||
Sbjct: 1860 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 1801

                                                                        
Query: 378  gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 437
            || || |||||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 1800 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 1741

                                                                        
Query: 438  aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 497
            | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 1740 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 1681

                                                                        
Query: 498  gtaacattgctcagtggctgcggcaacattgggttcgacgcgtagtgtatcatcagtgag 557
            |||||||||||||| ||||| |||||||||||||| || ||||| || ||||||| ||||
Sbjct: 1680 gtaacattgctcagcggctgtggcaacattgggtttgatgcgtattgaatcatcactgag 1621

                                                                        
Query: 558  agcaaggtaccactgtggcgctttacaaggcgcatcctcagggggagaggcgagtgcttg 617
            ||||| || || || || ||||| ||||||||||||||||  |||||||| |||||||||
Sbjct: 1620 agcaatgttccgctatgtcgcttcacaaggcgcatcctcaaagggagaggtgagtgcttg 1561

                                      
Query: 618  ggcaggaagctgtatttcatgatggg 643
            ||||| |||||||| |||||||||||
Sbjct: 1560 ggcagaaagctgtacttcatgatggg 1535



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                 
Query: 136  gggtaaagtaacagctacaatacaaagaaggtaccaa 172
            ||||||||||||| |||||||||||||||||||||||
Sbjct: 2033 gggtaaagtaacaactacaatacaaagaaggtaccaa 1997

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  472 bits (238), Expect = e-130
 Identities = 394/446 (88%)
 Strand = Plus / Plus

                                                                           
Query: 198     ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 257
               ||||| |||||||||||||||||| | ||||||||||| || |||| ||   ||||||||
Sbjct: 8789507 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 8789566

                                                                           
Query: 258     cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 317
               || || ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 8789567 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 8789626

                                                                           
Query: 318     acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 377
               ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| ||||||
Sbjct: 8789627 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 8789686

                                                                           
Query: 378     gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 437
               || || |||||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 8789687 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 8789746

                                                                           
Query: 438     aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 497
               | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 8789747 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 8789806

                                                                           
Query: 498     gtaacattgctcagtggctgcggcaacattgggttcgacgcgtagtgtatcatcagtgag 557
               |||||||||||||| ||||| |||||||||||||| || ||||| || ||||||| ||||
Sbjct: 8789807 gtaacattgctcagcggctgtggcaacattgggtttgatgcgtattgaatcatcactgag 8789866

                                                                           
Query: 558     agcaaggtaccactgtggcgctttacaaggcgcatcctcagggggagaggcgagtgcttg 617
               ||||| || || || || ||||| ||||||||||||||||  |||||||| |||||||||
Sbjct: 8789867 agcaatgttccgctatgtcgcttcacaaggcgcatcctcaaagggagaggtgagtgcttg 8789926

                                         
Query: 618     ggcaggaagctgtatttcatgatggg 643
               ||||| |||||||| |||||||||||
Sbjct: 8789927 ggcagaaagctgtacttcatgatggg 8789952



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                    
Query: 136     gggtaaagtaacagctacaatacaaagaaggtaccaa 172
               ||||||||||||| |||||||||||||||||||||||
Sbjct: 8789454 gggtaaagtaacaactacaatacaaagaaggtaccaa 8789490

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>dbj|AP004690.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0437G01
          Length = 147101

 Score =  472 bits (238), Expect = e-130
 Identities = 394/446 (88%)
 Strand = Plus / Plus

                                                                         
Query: 198   ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 257
             ||||| |||||||||||||||||| | ||||||||||| || |||| ||   ||||||||
Sbjct: 67256 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 67315

                                                                         
Query: 258   cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 317
             || || ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 67316 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 67375

                                                                         
Query: 318   acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 377
             ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| ||||||
Sbjct: 67376 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 67435

                                                                         
Query: 378   gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 437
             || || |||||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 67436 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 67495

                                                                         
Query: 438   aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 497
             | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 67496 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 67555

                                                                         
Query: 498   gtaacattgctcagtggctgcggcaacattgggttcgacgcgtagtgtatcatcagtgag 557
             |||||||||||||| ||||| |||||||||||||| || ||||| || ||||||| ||||
Sbjct: 67556 gtaacattgctcagcggctgtggcaacattgggtttgatgcgtattgaatcatcactgag 67615

                                                                         
Query: 558   agcaaggtaccactgtggcgctttacaaggcgcatcctcagggggagaggcgagtgcttg 617
             ||||| || || || || ||||| ||||||||||||||||  |||||||| |||||||||
Sbjct: 67616 agcaatgttccgctatgtcgcttcacaaggcgcatcctcaaagggagaggtgagtgcttg 67675

                                       
Query: 618   ggcaggaagctgtatttcatgatggg 643
             ||||| |||||||| |||||||||||
Sbjct: 67676 ggcagaaagctgtacttcatgatggg 67701



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                  
Query: 136   gggtaaagtaacagctacaatacaaagaaggtaccaa 172
             ||||||||||||| |||||||||||||||||||||||
Sbjct: 67203 gggtaaagtaacaactacaatacaaagaaggtaccaa 67239

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>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OSJNBb0070J06
          Length = 142303

 Score =  472 bits (238), Expect = e-130
 Identities = 394/446 (88%)
 Strand = Plus / Plus

                                                                          
Query: 198    ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 257
              ||||| |||||||||||||||||| | ||||||||||| || |||| ||   ||||||||
Sbjct: 132486 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 132545

                                                                          
Query: 258    cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 317
              || || ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 132546 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 132605

                                                                          
Query: 318    acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 377
              ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| ||||||
Sbjct: 132606 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 132665

                                                                          
Query: 378    gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 437
              || || |||||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 132666 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 132725

                                                                          
Query: 438    aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 497
              | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 132726 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 132785

                                                                          
Query: 498    gtaacattgctcagtggctgcggcaacattgggttcgacgcgtagtgtatcatcagtgag 557
              |||||||||||||| ||||| |||||||||||||| || ||||| || ||||||| ||||
Sbjct: 132786 gtaacattgctcagcggctgtggcaacattgggtttgatgcgtattgaatcatcactgag 132845

                                                                          
Query: 558    agcaaggtaccactgtggcgctttacaaggcgcatcctcagggggagaggcgagtgcttg 617
              ||||| || || || || ||||| ||||||||||||||||  |||||||| |||||||||
Sbjct: 132846 agcaatgttccgctatgtcgcttcacaaggcgcatcctcaaagggagaggtgagtgcttg 132905

                                        
Query: 618    ggcaggaagctgtatttcatgatggg 643
              ||||| |||||||| |||||||||||
Sbjct: 132906 ggcagaaagctgtacttcatgatggg 132931



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Plus

                                                   
Query: 136    gggtaaagtaacagctacaatacaaagaaggtaccaa 172
              ||||||||||||| |||||||||||||||||||||||
Sbjct: 132433 gggtaaagtaacaactacaatacaaagaaggtaccaa 132469

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>dbj|AK121452.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023142L20, full
            insert sequence
          Length = 2149

 Score =  472 bits (238), Expect = e-130
 Identities = 394/446 (88%)
 Strand = Plus / Minus

                                                                        
Query: 198  ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 257
            ||||| |||||||||||||||||| | ||||||||||| || |||| ||   ||||||||
Sbjct: 1982 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 1923

                                                                        
Query: 258  cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 317
            || || ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 1922 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 1863

                                                                        
Query: 318  acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 377
            ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| ||||||
Sbjct: 1862 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 1803

                                                                        
Query: 378  gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 437
            || || |||||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 1802 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 1743

                                                                        
Query: 438  aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 497
            | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 1742 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 1683

                                                                        
Query: 498  gtaacattgctcagtggctgcggcaacattgggttcgacgcgtagtgtatcatcagtgag 557
            |||||||||||||| ||||| |||||||||||||| || ||||| || ||||||| ||||
Sbjct: 1682 gtaacattgctcagcggctgtggcaacattgggtttgatgcgtattgaatcatcactgag 1623

                                                                        
Query: 558  agcaaggtaccactgtggcgctttacaaggcgcatcctcagggggagaggcgagtgcttg 617
            ||||| || || || || ||||| ||||||||||||||||  |||||||| |||||||||
Sbjct: 1622 agcaatgttccgctatgtcgcttcacaaggcgcatcctcaaagggagaggtgagtgcttg 1563

                                      
Query: 618  ggcaggaagctgtatttcatgatggg 643
            ||||| |||||||| |||||||||||
Sbjct: 1562 ggcagaaagctgtacttcatgatggg 1537



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                 
Query: 136  gggtaaagtaacagctacaatacaaagaaggtaccaa 172
            ||||||||||||| |||||||||||||||||||||||
Sbjct: 2035 gggtaaagtaacaactacaatacaaagaaggtaccaa 1999

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>dbj|AK102707.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033104B11, full
            insert sequence
          Length = 2141

 Score =  472 bits (238), Expect = e-130
 Identities = 394/446 (88%)
 Strand = Plus / Minus

                                                                        
Query: 198  ctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatggctggg 257
            ||||| |||||||||||||||||| | ||||||||||| || |||| ||   ||||||||
Sbjct: 1980 ctcccactggagaaggtgtggccagcctcattaaactgagccgtgccatcagtggctggg 1921

                                                                        
Query: 258  cagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattccaaca 317
            || || ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||
Sbjct: 1920 catagtttgatgccagacaatgtaaatggcccttggtaagcaaacttcaccatcccaaca 1861

                                                                        
Query: 318  acctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaaccgtcca 377
            ||||| || |||||||| || |||||||| ||||| |||||||| || ||||| ||||||
Sbjct: 1860 acctctagctcaccatcctttgagtcctgatctacaggcatccgagccctcaaacgtcca 1801

                                                                        
Query: 378  gcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgcccggttc 437
            || || |||||||| |||||||||| |||||||||||||||||||||||||||||| |||
Sbjct: 1800 gcaggtcctttcaggggaatgtctgggatgtgccacctgagctccctctctgcccgattc 1741

                                                                        
Query: 438  aacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaatgaat 497
            | ||| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||| 
Sbjct: 1740 agcacagccttgggtgaaacatttagcagagttgggtccacaggaagcttaacaatgaac 1681

                                                                        
Query: 498  gtaacattgctcagtggctgcggcaacattgggttcgacgcgtagtgtatcatcagtgag 557
            |||||||||||||| ||||| |||||||||||||| || ||||| || ||||||| ||||
Sbjct: 1680 gtaacattgctcagcggctgtggcaacattgggtttgatgcgtattgaatcatcactgag 1621

                                                                        
Query: 558  agcaaggtaccactgtggcgctttacaaggcgcatcctcagggggagaggcgagtgcttg 617
            ||||| || || || || ||||| ||||||||||||||||  |||||||| |||||||||
Sbjct: 1620 agcaatgttccgctatgtcgcttcacaaggcgcatcctcaaagggagaggtgagtgcttg 1561

                                      
Query: 618  ggcaggaagctgtatttcatgatggg 643
            ||||| |||||||| |||||||||||
Sbjct: 1560 ggcagaaagctgtacttcatgatggg 1535



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 36/37 (97%)
 Strand = Plus / Minus

                                                 
Query: 136  gggtaaagtaacagctacaatacaaagaaggtaccaa 172
            ||||||||||||| |||||||||||||||||||||||
Sbjct: 2033 gggtaaagtaacaactacaatacaaagaaggtaccaa 1997

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>gb|AY105218.1| Zea mays PCO148558 mRNA sequence
          Length = 743

 Score =  400 bits (202), Expect = e-108
 Identities = 391/454 (86%)
 Strand = Plus / Minus

                                                                       
Query: 193 ggtagctcccgctggagaaggtgtggccaacttcattaaactgggcagtgctattgatgg 252
           |||| ||||| ||||||||||| ||||||||||||||||| |||||| ||| ||   |||
Sbjct: 587 ggtaactcccactggagaaggtatggccaacttcattaaattgggcaatgccatcagtgg 528

                                                                       
Query: 253 ctgggcagagcttgatgccagacaatgtgaatggcccttggtaagcaaacttgaccattc 312
           ||||||| || || |||||||||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 527 ctgggcatagtttaatgccagacaatgtgaatggaccttggtaagcaaacttcaccatcc 468

                                                                       
Query: 313 caacaacctccagttcaccatctttggagtcctggtctacgggcatccgtgctctcaacc 372
           |||||||||| || ||||||||||||||||| ||||| || |||||||| || || | ||
Sbjct: 467 caacaacctctagctcaccatctttggagtcttggtcaacaggcatccgcgccctgagcc 408

                                                                       
Query: 373 gtccagcgggacctttcagaggaatgtctgagatgtgccacctgagctccctctctgccc 432
             || || ||||||||||| ||||||||||| || ||||| || | |||  |||||||||
Sbjct: 407 tgccggctggacctttcaggggaatgtctgaaatatgccatctaaactctttctctgccc 348

                                                                       
Query: 433 ggttcaacacggccttgggagaaacattaagcagagttggatccacaggaagcttaacaa 492
           |||| | ||| |||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct: 347 ggtttagcacagccttgggtgaaacattgagcagagtaggatccacaggaagcttaacaa 288

                                                                       
Query: 493 tgaatgtaacattgctcagtggctgcggcaacattgggttcgacgcgtagtgtatcatca 552
            |||||||||||||||||| ||||| |||| |||||| || || ||||| ||||||||||
Sbjct: 287 cgaatgtaacattgctcagaggctggggcagcattggattggatgcgtactgtatcatca 228

                                                                       
Query: 553 gtgagagcaaggtaccactgtggcgctttacaaggcgcatcctcagggggagaggcgagt 612
            |||||| || || ||||| |||||||| || |||||||||||||  |||||||| ||||
Sbjct: 227 ctgagagtaacgttccactatggcgcttcactaggcgcatcctcaaagggagaggtgagt 168

                                             
Query: 613 gcttgggcaggaagctgtatttcatgatgggaat 646
           |||| |||||||||||||| ||||||| ||||||
Sbjct: 167 gcttcggcaggaagctgtacttcatgaggggaat 134

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>ref|XM_695823.1| PREDICTED: Danio rerio similar to fibrillin 2 precursor
           (LOC572140), partial mRNA
          Length = 676

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 183 cagatgcaacggtagctcccgc 204
           ||||||||||||||||||||||
Sbjct: 632 cagatgcaacggtagctcccgc 611

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>gb|AC115124.6| Mus musculus BAC clone RP24-349M22 from chromosome 18, complete sequence
          Length = 137371

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 395    aatgtctgagatgtgccacct 415
              |||||||||||||||||||||
Sbjct: 117238 aatgtctgagatgtgccacct 117258

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>gb|AC127368.3| Mus musculus BAC clone RP23-22J14 from chromosome 18, complete sequence
          Length = 206102

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 395    aatgtctgagatgtgccacct 415
              |||||||||||||||||||||
Sbjct: 166980 aatgtctgagatgtgccacct 166960

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>emb|AL606902.26| Mouse DNA sequence from clone RP23-167A12 on chromosome 4, complete
             sequence
          Length = 100421

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 400   ctgagatgtgccacctgagct 420
             |||||||||||||||||||||
Sbjct: 55933 ctgagatgtgccacctgagct 55913

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>gb|DQ242512.1| Neurospora crassa CSN-4 (NCU07361) mRNA, complete cds
          Length = 1323

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gcaacattgggttcgacgcg 539
            ||||||||||||||||||||
Sbjct: 1007 gcaacattgggttcgacgcg 1026

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>gb|AC169385.2| Mus musculus BAC clone RP23-247C1 from chromosome 16, complete sequence
          Length = 206814

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 596    cagggggagaggcgagtgct 615
              ||||||||||||||||||||
Sbjct: 132119 cagggggagaggcgagtgct 132138

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>ref|XM_953041.1| Neurospora crassa OR74A hypothetical protein (NCU07361.1) partial
            mRNA
          Length = 1323

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gcaacattgggttcgacgcg 539
            ||||||||||||||||||||
Sbjct: 1007 gcaacattgggttcgacgcg 1026

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>ref|XM_327646.1| Neurospora crassa OR74A hypothetical protein (NCU07361.1) partial
            mRNA
          Length = 1323

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 520  gcaacattgggttcgacgcg 539
            ||||||||||||||||||||
Sbjct: 1007 gcaacattgggttcgacgcg 1026

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>emb|BX295539.1|NCB1D14 Neurospora crassa genomic DNA, BAC contig B1D14
          Length = 138898

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   gctcccgctggagaaggtgt 216
             ||||||||||||||||||||
Sbjct: 44415 gctcccgctggagaaggtgt 44434

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>gb|AC154606.2| Mus musculus BAC clone RP23-252E10 from chromosome 16, complete
             sequence
          Length = 181697

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 596   cagggggagaggcgagtgct 615
             ||||||||||||||||||||
Sbjct: 32977 cagggggagaggcgagtgct 32996

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 142      agtaacagctacaatacaaa 161
                ||||||||||||||||||||
Sbjct: 34480548 agtaacagctacaatacaaa 34480567

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>gb|AC097377.3| Homo sapiens BAC clone RP11-83F13 from 2, complete sequence
          Length = 158923

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 81     gaatacgtacaaatatgaat 100
              ||||||||||||||||||||
Sbjct: 133118 gaatacgtacaaatatgaat 133137

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>dbj|AP003260.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0468B07
          Length = 169071

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    agtaacagctacaatacaaa 161
              ||||||||||||||||||||
Sbjct: 162892 agtaacagctacaatacaaa 162911

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>dbj|AP003247.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0425G02
          Length = 155432

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   agtaacagctacaatacaaa 161
             ||||||||||||||||||||
Sbjct: 56267 agtaacagctacaatacaaa 56286

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>emb|BX005372.6| Zebrafish DNA sequence from clone DKEY-76K16, complete sequence
          Length = 199736

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    tcgaaaacatgatttaagtt 65
             ||||||||||||||||||||
Sbjct: 38929 tcgaaaacatgatttaagtt 38948

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>dbj|AB084378.1| Euphausia superba mitochondrial DNA, trnM to rrnS gene region
          Length = 14606

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 479  aggaagcttaacaatgaatg 498
            ||||||||||||||||||||
Sbjct: 8783 aggaagcttaacaatgaatg 8802


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,142,566
Number of Sequences: 3902068
Number of extensions: 5142566
Number of successful extensions: 107728
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107636
Number of HSP's gapped (non-prelim): 91
length of query: 647
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 624
effective length of database: 17,143,297,704
effective search space: 10697417767296
effective search space used: 10697417767296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result