ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2l16 |
|---|---|
| Clone Library Name | barley_pub |
>KCTD2_HUMAN (Q14681) Potassium channel tetramerisation domain-containing| protein 2 Length = 263 Score = 32.0 bits (71), Expect = 0.42 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Frame = +1 Query: 157 GLGWGSFFTSSPPRTRPLGP---GHRHPATLLPANLLPGP 267 G+G G PP RP GP GH PA + L PGP Sbjct: 20 GVGDGGGPVRGPPSPRPAGPTPRGHGRPAAAVAQRLEPGP 59
>HSF1_ARATH (P41151) Heat shock factor protein 1 (HSF 1) (Heat shock| transcription factor 1) (HSTF 1) Length = 495 Score = 31.2 bits (69), Expect = 0.71 Identities = 19/42 (45%), Positives = 21/42 (50%) Frame = +1 Query: 157 GLGWGSFFTSSPPRTRPLGPGHRHPATLLPANLLPGPSASAT 282 G G T+ PPR + HPATLL AN LP P S T Sbjct: 23 GTNIGEAVTAPPPR-------NPHPATLLNANSLPPPFLSKT 57
>T22D4_MOUSE (Q9EQN3) TSC22 domain family protein 4 (TSC22-related-inducible| leucine zipper protein 2) Length = 387 Score = 30.4 bits (67), Expect = 1.2 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%) Frame = +1 Query: 181 TSSPPRTRPLGPGHRHPATLLPA---NLLPGPSASATQP 288 ++SPP+ RP GPG A LP+ + G SA+AT P Sbjct: 187 SASPPQQRPPGPGTGDSAQTLPSLRVEVESGGSAAATPP 225
>LHX5_BRARE (P52889) LIM/homeobox protein Lhx5 (Homeobox protein LIM-5)| Length = 399 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 73 PSDLVRRARSKVFHLNCFTCM 93
>LHX5_RAT (P61376) LIM/homeobox protein Lhx5 (Homeobox protein LIM-2)| Length = 402 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 73 PSDLVRKARSKVFHLNCFTCM 93
>LHX5_MOUSE (P61375) LIM/homeobox protein Lhx5| Length = 402 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 73 PSDLVRKARSKVFHLNCFTCM 93
>LHX5_HUMAN (Q9H2C1) LIM/homeobox protein Lhx5| Length = 402 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 73 PSDLVRKARSKVFHLNCFTCM 93
>LHX1_SAIBB (Q5IS89) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| Length = 406 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 72 PSDLVRRARSKVFHLNCFTCM 92
>LHX1_RAT (P63007) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) (Rlim) Length = 406 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 72 PSDLVRRARSKVFHLNCFTCM 92
>LHX1_PANTR (Q5IS44) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| Length = 406 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 72 PSDLVRRARSKVFHLNCFTCM 92
>LHX1_MOUSE (P63006) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) Length = 406 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 72 PSDLVRRARSKVFHLNCFTCM 92
>LHX1_MESAU (P63008) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) (Homeobox protein LMX-2) Length = 406 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 72 PSDLVRRARSKVFHLNCFTCM 92
>LHX1_HUMAN (P48742) LIM/homeobox protein Lhx1 (LIM homeobox protein 1)| (Homeobox protein Lim-1) Length = 406 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 72 PSDLVRRARSKVFHLNCFTCM 92
>LHX1_CHICK (P53411) LIM/homeobox protein Lhx1 (Homeobox protein LIM-1)| Length = 406 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 72 PSDLVRRARSKVFHLNCFTCM 92
>LHX1_XENLA (P29674) LIM/homeobox protein Lhx1 (Homeobox protein LIM-1)| (xLIM-1) Length = 403 Score = 28.5 bits (62), Expect = 4.6 Identities = 10/21 (47%), Positives = 16/21 (76%) Frame = +1 Query: 13 PSNTIRQYRAR*EHLGCFTCL 75 PS+ +R+ R++ HL CFTC+ Sbjct: 72 PSDLVRRARSKVFHLNCFTCM 92
>GATH_SCHPO (O94509) Probable glutamyl-tRNA(Gln) amidotransferase subunit A,| mitochondrial precursor (EC 6.3.5.-) (Glu-ADT subunit A) Length = 471 Score = 28.5 bits (62), Expect = 4.6 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +1 Query: 172 SFFTSSPPRTRPLGPGHRHPATLLPANLLPGPSAS 276 SFF SS P P H L+PAN+ PS S Sbjct: 403 SFFNSSQPIETPSSYSHLSDTMLVPANMAGIPSVS 437
>MK07_MOUSE (Q9WVS8) Mitogen-activated protein kinase 7 (EC 2.7.11.24)| (Extracellular signal-regulated kinase 5) (ERK-5) (BMK1 kinase) Length = 806 Score = 28.5 bits (62), Expect = 4.6 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = +1 Query: 181 TSSPPRTRPLGPGHRHPATLLPANLLPGPSASATQP 288 +S+ P + P GP + L PA +PGP++ P Sbjct: 594 SSAQPTSTPTGPVSQSTGPLQPAGSIPGPASQPVCP 629
>GAG_FSVGA (P03337) Gag polyprotein [Contains: Core protein p15; Core protein| p12; Core protein p30] Length = 425 Score = 28.1 bits (61), Expect = 6.0 Identities = 17/39 (43%), Positives = 18/39 (46%) Frame = +1 Query: 166 WGSFFTSSPPRTRPLGPGHRHPATLLPANLLPGPSASAT 282 W S T P RP P + P T LP L P PSA T Sbjct: 163 WRSLATDPPSWVRPFLPPPK-PPTSLPQPLSPQPSAPLT 200
>SEM6D_PONPY (Q5R7F5) Semaphorin-6D precursor| Length = 1017 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +1 Query: 175 FFTSSPPRTRPLGPGHRHPATLLP 246 FF SSPP PL GH A +LP Sbjct: 752 FFPSSPPPHSPLSHGHIPSAIVLP 775
>PALA_CRYNE (Q5KEK0) pH-response regulator protein palA/RIM20| Length = 902 Score = 27.7 bits (60), Expect = 7.8 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = +1 Query: 172 SFFTSSPPRT-RPLGPGHRH--PATLLPANLLPGPSASATQP 288 S F+SSP R+ P P R P TL + LP PS+SA QP Sbjct: 784 SSFSSSPVRSPAPSAPARRESPPKTL---SFLPHPSSSAWQP 822
>SEM6D_MOUSE (Q76KF0) Semaphorin-6D precursor| Length = 1073 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +1 Query: 175 FFTSSPPRTRPLGPGHRHPATLLP 246 FF SSPP PL GH A +LP Sbjct: 808 FFPSSPPPHSPLSHGHIPSAIVLP 831
>SEM6D_HUMAN (Q8NFY4) Semaphorin-6D precursor| Length = 1073 Score = 27.7 bits (60), Expect = 7.8 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +1 Query: 175 FFTSSPPRTRPLGPGHRHPATLLP 246 FF SSPP PL GH A +LP Sbjct: 808 FFPSSPPPHSPLSHGHIPSAIVLP 831 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 29,170,010 Number of Sequences: 219361 Number of extensions: 439712 Number of successful extensions: 1064 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1019 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1062 length of database: 80,573,946 effective HSP length: 71 effective length of database: 64,999,315 effective search space used: 1559983560 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
