>ref|XM_483750.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1661

 Score =  143 bits (72), Expect = 6e-31
 Identities = 114/126 (90%), Gaps = 2/126 (1%)
 Strand = Plus / Minus

                                                                        
Query: 349  gagcttatgtcctgggaactgtaacattcaagatcttcacatcctgatacggcntgtcat 408
            ||||||||||| | ||||||||||| ||||||||||||||||||||||| ||  ||||||
Sbjct: 1340 gagcttatgtctttggaactgtaacgttcaagatcttcacatcctgatatggtttgtcat 1281

                                                                        
Query: 409  ttttgtcgggtcttgaccttctcaatttgctgancaacatccatgcctttcacaacttct 468
            | ||||| ||||||||||||||| ||||||||| |||||||||| ||||||||||| |||
Sbjct: 1280 tcttgtc-ggtcttgaccttctcgatttgctgaacaacatccatccctttcacaac-tct 1223

                  
Query: 469  accaaa 474
            ||||||
Sbjct: 1222 accaaa 1217

>ref|XM_483749.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2416

 Score =  143 bits (72), Expect = 6e-31
 Identities = 114/126 (90%), Gaps = 2/126 (1%)
 Strand = Plus / Minus

                                                                        
Query: 349  gagcttatgtcctgggaactgtaacattcaagatcttcacatcctgatacggcntgtcat 408
            ||||||||||| | ||||||||||| ||||||||||||||||||||||| ||  ||||||
Sbjct: 2033 gagcttatgtctttggaactgtaacgttcaagatcttcacatcctgatatggtttgtcat 1974

                                                                        
Query: 409  ttttgtcgggtcttgaccttctcaatttgctgancaacatccatgcctttcacaacttct 468
            | ||||| ||||||||||||||| ||||||||| |||||||||| ||||||||||| |||
Sbjct: 1973 tcttgtc-ggtcttgaccttctcgatttgctgaacaacatccatccctttcacaac-tct 1916

                  
Query: 469  accaaa 474
            ||||||
Sbjct: 1915 accaaa 1910

>dbj|AB110199.1| Oryza sativa (japonica cultivar-group) mRNA for hypothetical
           protein, partial cds, clone: 23C4BG006
          Length = 854

 Score =  143 bits (72), Expect = 6e-31
 Identities = 114/126 (90%), Gaps = 2/126 (1%)
 Strand = Plus / Minus

                                                                       
Query: 349 gagcttatgtcctgggaactgtaacattcaagatcttcacatcctgatacggcntgtcat 408
           ||||||||||| | ||||||||||| ||||||||||||||||||||||| ||  ||||||
Sbjct: 552 gagcttatgtctttggaactgtaacgttcaagatcttcacatcctgatatggtttgtcat 493

                                                                       
Query: 409 ttttgtcgggtcttgaccttctcaatttgctgancaacatccatgcctttcacaacttct 468
           | ||||| ||||||||||||||| ||||||||| |||||||||| ||||||||||| |||
Sbjct: 492 tcttgtc-ggtcttgaccttctcgatttgctgaacaacatccatccctttcacaac-tct 435

                 
Query: 469 accaaa 474
           ||||||
Sbjct: 434 accaaa 429

>dbj|AK111941.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-E10, full
            insert sequence
          Length = 1661

 Score =  143 bits (72), Expect = 6e-31
 Identities = 114/126 (90%), Gaps = 2/126 (1%)
 Strand = Plus / Minus

                                                                        
Query: 349  gagcttatgtcctgggaactgtaacattcaagatcttcacatcctgatacggcntgtcat 408
            ||||||||||| | ||||||||||| ||||||||||||||||||||||| ||  ||||||
Sbjct: 1340 gagcttatgtctttggaactgtaacgttcaagatcttcacatcctgatatggtttgtcat 1281

                                                                        
Query: 409  ttttgtcgggtcttgaccttctcaatttgctgancaacatccatgcctttcacaacttct 468
            | ||||| ||||||||||||||| ||||||||| |||||||||| ||||||||||| |||
Sbjct: 1280 tcttgtc-ggtcttgaccttctcgatttgctgaacaacatccatccctttcacaac-tct 1223

                  
Query: 469  accaaa 474
            ||||||
Sbjct: 1222 accaaa 1217

>dbj|AK111654.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013147N22, full
            insert sequence
          Length = 2416

 Score =  143 bits (72), Expect = 6e-31
 Identities = 114/126 (90%), Gaps = 2/126 (1%)
 Strand = Plus / Minus

                                                                        
Query: 349  gagcttatgtcctgggaactgtaacattcaagatcttcacatcctgatacggcntgtcat 408
            ||||||||||| | ||||||||||| ||||||||||||||||||||||| ||  ||||||
Sbjct: 2033 gagcttatgtctttggaactgtaacgttcaagatcttcacatcctgatatggtttgtcat 1974

                                                                        
Query: 409  ttttgtcgggtcttgaccttctcaatttgctgancaacatccatgcctttcacaacttct 468
            | ||||| ||||||||||||||| ||||||||| |||||||||| ||||||||||| |||
Sbjct: 1973 tcttgtc-ggtcttgaccttctcgatttgctgaacaacatccatccctttcacaac-tct 1916

                  
Query: 469  accaaa 474
            ||||||
Sbjct: 1915 accaaa 1910

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  103 bits (52), Expect = 5e-19
 Identities = 82/91 (90%), Gaps = 1/91 (1%)
 Strand = Plus / Minus

                                                                            
Query: 349      gagcttatgtcctgggaactgtaacattcaagatcttcacatcctgatacggcntgtcat 408
                ||||||||||| | ||||||||||| ||||||||||||||||||||||| ||  ||||||
Sbjct: 27890384 gagcttatgtctttggaactgtaacgttcaagatcttcacatcctgatatggtttgtcat 27890325

                                               
Query: 409      ttttgtcgggtcttgaccttctcaatttgct 439
                | ||||| ||||||||||||||| |||||||
Sbjct: 27890324 tcttgtc-ggtcttgaccttctcgatttgct 27890295



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                     
Query: 438      ctgancaacatccatgcctttcacaacttctaccaaa 474
                |||| |||||||||| ||||||||||| |||||||||
Sbjct: 27890205 ctgaacaacatccatccctttcacaac-tctaccaaa 27890170

>dbj|AP003928.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1150_A11
          Length = 142010

 Score =  103 bits (52), Expect = 5e-19
 Identities = 82/91 (90%), Gaps = 1/91 (1%)
 Strand = Plus / Minus

                                                                         
Query: 349   gagcttatgtcctgggaactgtaacattcaagatcttcacatcctgatacggcntgtcat 408
             ||||||||||| | ||||||||||| ||||||||||||||||||||||| ||  ||||||
Sbjct: 98462 gagcttatgtctttggaactgtaacgttcaagatcttcacatcctgatatggtttgtcat 98403

                                            
Query: 409   ttttgtcgggtcttgaccttctcaatttgct 439
             | ||||| ||||||||||||||| |||||||
Sbjct: 98402 tcttgtc-ggtcttgaccttctcgatttgct 98373



 Score = 44.1 bits (22), Expect = 0.43
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Minus

                                                  
Query: 438   ctgancaacatccatgcctttcacaacttctaccaaa 474
             |||| |||||||||| ||||||||||| |||||||||
Sbjct: 98283 ctgaacaacatccatccctttcacaac-tctaccaaa 98248

>ref|NM_112246.2| Arabidopsis thaliana EIF4A1; ATP-dependent helicase AT3G13920
           (EIF4A1) transcript variant AT3G13920.1 mRNA, complete
           cds
          Length = 1761

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 522 tgaccttctcaatttgctgagcaa 499

>ref|NM_001035616.1| Arabidopsis thaliana EIF4A1; ATP-dependent helicase AT3G13920
           (EIF4A1) transcript variant AT3G13920.2 mRNA, complete
           cds
          Length = 1764

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 565 tgaccttctcaatttgctgagcaa 542

>emb|X65052.1|ATTIF4A1 A.thaliana mRNA for eukaryotic translation initiation factor 4A-1
          Length = 1736

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 528 tgaccttctcaatttgctgagcaa 505

>gb|BT000655.1| Arabidopsis thaliana clone RAFL07-07-D14 (R10830) putative
           eukaryotic initiation factor 4A (At3g13920) mRNA,
           complete cds
          Length = 1702

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 522 tgaccttctcaatttgctgagcaa 499

>gb|AY091304.1| Arabidopsis thaliana putative eukaryotic initiation factor 4A
           (At3g13920) mRNA, complete cds
          Length = 1270

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 379 tgaccttctcaatttgctgagcaa 356

>gb|AY050957.1| Arabidopsis thaliana putative Eukaryotic initiation factor 4A
           (At3g13920) mRNA, complete cds
          Length = 1713

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 515 tgaccttctcaatttgctgagcaa 492

>emb|AJ298137.1|ATH298137 Arabidopsis thaliana eIF-4A1 gene for translation initiation factor
            eIF-4A1, exons 1-5 and gus gene for beta-glucuronidase
          Length = 11509

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 422  tgaccttctcaatttgctgancaa 445
            |||||||||||||||||||| |||
Sbjct: 2270 tgaccttctcaatttgctgagcaa 2247

>gb|AY139981.1| Arabidopsis thaliana unknown protein mRNA, complete cds
          Length = 1713

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 521 tgaccttctcaatttgctgagcaa 498

>gb|AY098962.1| Arabidopsis thaliana AT3g13920/MDC16_4 mRNA, complete cds
          Length = 1239

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 379 tgaccttctcaatttgctgagcaa 356

>gb|AY081287.1| Arabidopsis thaliana eukaryotic translation initiation factor
           (At3g13920) mRNA, complete cds
          Length = 1611

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 522 tgaccttctcaatttgctgagcaa 499

>gb|AC040166.6| Homo sapiens chromosome 16 clone RP11-44I4, complete sequence
          Length = 136356

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 235   ttaccccaganacaacacctcttc 258
             |||||||||| |||||||||||||
Sbjct: 28151 ttaccccagacacaacacctcttc 28128

>gb|AY052344.1| Arabidopsis thaliana AT3g13920/MDC16_4 mRNA, complete cds
          Length = 1620

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 511 tgaccttctcaatttgctgagcaa 488

>gb|AC026475.6|AC026475 Homo sapiens chromosome 16 clone RP11-71H23, complete sequence
          Length = 159611

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 235    ttaccccaganacaacacctcttc 258
              |||||||||| |||||||||||||
Sbjct: 152264 ttaccccagacacaacacctcttc 152241

>gb|AY086907.1| Arabidopsis thaliana clone 29310 mRNA, complete sequence
          Length = 1613

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 522 tgaccttctcaatttgctgagcaa 499

>dbj|AB019229.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MDC16
          Length = 84294

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 422   tgaccttctcaatttgctgancaa 445
             |||||||||||||||||||| |||
Sbjct: 18886 tgaccttctcaatttgctgagcaa 18909

>emb|AJ298138.1|ATH298138 Arabidopsis thaliana mRNA for translation initiation factor eIF-4A1
           (eIF-4A1 gene)
          Length = 1709

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 422 tgaccttctcaatttgctgancaa 445
           |||||||||||||||||||| |||
Sbjct: 505 tgaccttctcaatttgctgagcaa 482

>gb|AC153800.1| Mus musculus  BAC RP23-128O3 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 174134

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   actttgagaaataattctgt 185
             ||||||||||||||||||||
Sbjct: 77917 actttgagaaataattctgt 77936

>ref|XM_414535.1| PREDICTED: Gallus gallus similar to hypothetical protein BC007436
            (LOC416210), mRNA
          Length = 2733

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 170  tgagaaataattctgtccac 189
            ||||||||||||||||||||
Sbjct: 1727 tgagaaataattctgtccac 1708

>emb|AL590452.12| Human DNA sequence from clone RP11-326G21 on chromosome 1 Contains
            the 5' end of the PDE4DIP gene for phosphodiesterase 4D
            interacting protein (myomegalin) and a CpG island,
            complete sequence
          Length = 156813

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 478  ctggatggttttgttatcta 497
            ||||||||||||||||||||
Sbjct: 8427 ctggatggttttgttatcta 8408

>emb|AL138796.6| Human DNA sequence from clone RP4-791M13 on chromosome 1 Contains the
             3' end of a novel gene and the 3' end of the PDE4DIP gene
             for phosphodiesterase 4D interacting protein (myomegalin),
             complete sequence
          Length = 120928

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 478   ctggatggttttgttatcta 497
             ||||||||||||||||||||
Sbjct: 99921 ctggatggttttgttatcta 99902

>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
              complete sequence
          Length = 188317

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    cttctaccaaaacactggat 483
              ||||||||||||||||||||
Sbjct: 148089 cttctaccaaaacactggat 148108

>emb|CR523593.1| Gallus gallus finished cDNA, clone ChEST85n15
          Length = 1328

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 170 tgagaaataattctgtccac 189
           ||||||||||||||||||||
Sbjct: 326 tgagaaataattctgtccac 307

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 464      cttctaccaaaacactggat 483
                ||||||||||||||||||||
Sbjct: 19056164 cttctaccaaaacactggat 19056183

>gb|AC155942.6| Mus musculus 10 BAC RP24-492L7 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 174309

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 166    actttgagaaataattctgt 185
              ||||||||||||||||||||
Sbjct: 132329 actttgagaaataattctgt 132348

>emb|AL772336.5| Mouse DNA sequence from clone RP23-180H12 on chromosome 4, complete
              sequence
          Length = 154034

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 187    cacagccaaagatgtgtttt 206
              ||||||||||||||||||||
Sbjct: 109911 cacagccaaagatgtgtttt 109892


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,994,472
Number of Sequences: 3902068
Number of extensions: 3994472
Number of successful extensions: 111959
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111877
Number of HSP's gapped (non-prelim): 75
length of query: 499
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 477
effective length of database: 17,147,199,772
effective search space: 8179214291244
effective search space used: 8179214291244
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)