>ref|NM_197897.1| Oryza sativa (japonica cultivar-group) putative acyltransferase
            (OSJNBa0035H01.8), mRNA
          Length = 1284

 Score =  127 bits (64), Expect = 6e-26
 Identities = 73/76 (96%)
 Strand = Plus / Minus

                                                                        
Query: 653  tactttatttcttcagctactgacaagcctacaccatggaaggatatcaccctttgctca 712
            |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1112 tactttatctcttcagttactgacaagcctacaccatggaaggatataaccctttgctca 1053

                            
Query: 713  ccaatctctttctcaa 728
            ||||||||||||||||
Sbjct: 1052 ccaatctctttctcaa 1037



 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 100/119 (84%)
 Strand = Plus / Minus

                                                                        
Query: 485  cgccatggttgcgagagtgagatggcagggttcgacgaaactgctccacggtctctaaag 544
            ||||||||||| |||||||||||||||  || ||| ||| ||||||| ||  ||||||||
Sbjct: 1280 cgccatggttgtgagagtgagatggcactgtccgatgaatctgctcctcgacctctaaag 1221

                                                                       
Query: 545  atagcagacttgaggacattatattgatcaacaactgaactgtacagagcctctgagaa 603
            |||||||| |||||  ||||||| |||||||| |||||  ||||||  | |||||||||
Sbjct: 1220 atagcagatttgagcgcattatactgatcaacgactgagttgtacaatgactctgagaa 1162

>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete
             sequence
          Length = 64582

 Score =  127 bits (64), Expect = 6e-26
 Identities = 73/76 (96%)
 Strand = Plus / Minus

                                                                         
Query: 653   tactttatttcttcagctactgacaagcctacaccatggaaggatatcaccctttgctca 712
             |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 43663 tactttatctcttcagttactgacaagcctacaccatggaaggatataaccctttgctca 43604

                             
Query: 713   ccaatctctttctcaa 728
             ||||||||||||||||
Sbjct: 43603 ccaatctctttctcaa 43588



 Score =  101 bits (51), Expect = 3e-18
 Identities = 117/139 (84%)
 Strand = Plus / Minus

                                                                         
Query: 465   ctgagaaagcttagtttcaccgccatggttgcgagagtgagatggcagggttcgacgaaa 524
             ||||||||||  ||||||| ||||||||||| |||||||||||||||  || ||| ||| 
Sbjct: 44617 ctgagaaagcggagtttcatcgccatggttgtgagagtgagatggcactgtccgatgaat 44558

                                                                         
Query: 525   ctgctccacggtctctaaagatagcagacttgaggacattatattgatcaacaactgaac 584
             ||||||| ||  |||||||||||||||| |||||  ||||||| |||||||| |||||  
Sbjct: 44557 ctgctcctcgacctctaaagatagcagatttgagcgcattatactgatcaacgactgagt 44498

                                
Query: 585   tgtacagagcctctgagaa 603
             ||||||  | |||||||||
Sbjct: 44497 tgtacaatgactctgagaa 44479



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                             
Query: 422   agcagttcatctgctctgtcgaaaagaaatga 453
             ||||||||||||||| ||||||||||||||||
Sbjct: 45430 agcagttcatctgctgtgtcgaaaagaaatga 45399

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  127 bits (64), Expect = 6e-26
 Identities = 73/76 (96%)
 Strand = Plus / Minus

                                                                            
Query: 653      tactttatttcttcagctactgacaagcctacaccatggaaggatatcaccctttgctca 712
                |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 22527945 tactttatctcttcagttactgacaagcctacaccatggaaggatataaccctttgctca 22527886

                                
Query: 713      ccaatctctttctcaa 728
                ||||||||||||||||
Sbjct: 22527885 ccaatctctttctcaa 22527870



 Score =  101 bits (51), Expect = 3e-18
 Identities = 117/139 (84%)
 Strand = Plus / Minus

                                                                            
Query: 465      ctgagaaagcttagtttcaccgccatggttgcgagagtgagatggcagggttcgacgaaa 524
                ||||||||||  ||||||| ||||||||||| |||||||||||||||  || ||| ||| 
Sbjct: 22528899 ctgagaaagcggagtttcatcgccatggttgtgagagtgagatggcactgtccgatgaat 22528840

                                                                            
Query: 525      ctgctccacggtctctaaagatagcagacttgaggacattatattgatcaacaactgaac 584
                ||||||| ||  |||||||||||||||| |||||  ||||||| |||||||| |||||  
Sbjct: 22528839 ctgctcctcgacctctaaagatagcagatttgagcgcattatactgatcaacgactgagt 22528780

                                   
Query: 585      tgtacagagcctctgagaa 603
                ||||||  | |||||||||
Sbjct: 22528779 tgtacaatgactctgagaa 22528761



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 422      agcagttcatctgctctgtcgaaaagaaatga 453
                ||||||||||||||| ||||||||||||||||
Sbjct: 22529712 agcagttcatctgctgtgtcgaaaagaaatga 22529681

>dbj|AK065123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001P02, full
            insert sequence
          Length = 2018

 Score =  127 bits (64), Expect = 6e-26
 Identities = 73/76 (96%)
 Strand = Plus / Minus

                                                                        
Query: 653  tactttatttcttcagctactgacaagcctacaccatggaaggatatcaccctttgctca 712
            |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 1251 tactttatctcttcagttactgacaagcctacaccatggaaggatataaccctttgctca 1192

                            
Query: 713  ccaatctctttctcaa 728
            ||||||||||||||||
Sbjct: 1191 ccaatctctttctcaa 1176



 Score =  109 bits (55), Expect = 1e-20
 Identities = 118/139 (84%)
 Strand = Plus / Minus

                                                                        
Query: 465  ctgagaaagcttagtttcaccgccatggttgcgagagtgagatggcagggttcgacgaaa 524
            ||||||||||  ||||||| ||||||||||| |||||||||||||||  || ||| ||| 
Sbjct: 1439 ctgagaaagcggagtttcatcgccatggttgtgagagtgagatggcactgtccgatgaat 1380

                                                                        
Query: 525  ctgctccacggtctctaaagatagcagacttgaggacattatattgatcaacaactgaac 584
            ||||||| ||  ||||||||||||||||||||||  ||||||| |||||||| |||||  
Sbjct: 1379 ctgctcctcgacctctaaagatagcagacttgagcgcattatactgatcaacgactgagt 1320

                               
Query: 585  tgtacagagcctctgagaa 603
            ||||||  | |||||||||
Sbjct: 1319 tgtacaatgactctgagaa 1301



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                            
Query: 422  agcagttcatctgctctgtcgaaaagaaatga 453
            ||||||||||||||| ||||||||||||||||
Sbjct: 1506 agcagttcatctgctgtgtcgaaaagaaatga 1475

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  127 bits (64), Expect = 6e-26
 Identities = 73/76 (96%)
 Strand = Plus / Minus

                                                                            
Query: 653      tactttatttcttcagctactgacaagcctacaccatggaaggatatcaccctttgctca 712
                |||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 22540413 tactttatctcttcagttactgacaagcctacaccatggaaggatataaccctttgctca 22540354

                                
Query: 713      ccaatctctttctcaa 728
                ||||||||||||||||
Sbjct: 22540353 ccaatctctttctcaa 22540338



 Score =  101 bits (51), Expect = 3e-18
 Identities = 117/139 (84%)
 Strand = Plus / Minus

                                                                            
Query: 465      ctgagaaagcttagtttcaccgccatggttgcgagagtgagatggcagggttcgacgaaa 524
                ||||||||||  ||||||| ||||||||||| |||||||||||||||  || ||| ||| 
Sbjct: 22541367 ctgagaaagcggagtttcatcgccatggttgtgagagtgagatggcactgtccgatgaat 22541308

                                                                            
Query: 525      ctgctccacggtctctaaagatagcagacttgaggacattatattgatcaacaactgaac 584
                ||||||| ||  |||||||||||||||| |||||  ||||||| |||||||| |||||  
Sbjct: 22541307 ctgctcctcgacctctaaagatagcagatttgagcgcattatactgatcaacgactgagt 22541248

                                   
Query: 585      tgtacagagcctctgagaa 603
                ||||||  | |||||||||
Sbjct: 22541247 tgtacaatgactctgagaa 22541229



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 31/32 (96%)
 Strand = Plus / Minus

                                                
Query: 422      agcagttcatctgctctgtcgaaaagaaatga 453
                ||||||||||||||| ||||||||||||||||
Sbjct: 22542180 agcagttcatctgctgtgtcgaaaagaaatga 22542149

>ref|XM_517982.1| PREDICTED: Pan troglodytes similar to protocadherin alpha 7 isoform
           2 precursor; KIAA0345-like 7; ortholog to mouse CNR4
           (LOC462125), mRNA
          Length = 7283

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 567 attgatcaacaactgaactgtac 589
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668

>gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL H155), complete
             sequence
          Length = 157970

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 567   attgatcaacaactgaactgtac 589
             |||||||||||||||||||||||
Sbjct: 69633 attgatcaacaactgaactgtac 69655

>ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA@) on chromosome 5
          Length = 297736

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 567   attgatcaacaactgaactgtac 589
             |||||||||||||||||||||||
Sbjct: 88338 attgatcaacaactgaactgtac 88316

>ref|NM_031501.1| Homo sapiens protocadherin alpha 5 (PCDHA5), transcript variant 2,
           mRNA
          Length = 2451

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 567 attgatcaacaactgaactgtac 589
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668

>ref|NM_018908.2| Homo sapiens protocadherin alpha 5 (PCDHA5), transcript variant 1,
           mRNA
          Length = 5218

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 567 attgatcaacaactgaactgtac 589
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668

>gb|BC033735.1| Homo sapiens protocadherin alpha 5, mRNA (cDNA clone MGC:44897
           IMAGE:5175471), complete cds
          Length = 4260

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 567 attgatcaacaactgaactgtac 589
           |||||||||||||||||||||||
Sbjct: 829 attgatcaacaactgaactgtac 807

>emb|CR860451.1| Pongo pygmaeus mRNA; cDNA DKFZp459H021 (from clone DKFZp459H021)
          Length = 4627

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 567 attgatcaacaactgaactgtac 589
           |||||||||||||||||||||||
Sbjct: 843 attgatcaacaactgaactgtac 821

>dbj|AB176649.1| Macaca fuscata CNRv05 mRNA for Protocadherin alpha, complete cds
          Length = 3120

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 567 attgatcaacaactgaactgtac 589
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668

>gb|AC008468.6|AC008468 Homo sapiens chromosome 5 clone CTC-365B8, complete sequence
          Length = 117096

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 567   attgatcaacaactgaactgtac 589
             |||||||||||||||||||||||
Sbjct: 93663 attgatcaacaactgaactgtac 93685

>gb|AF152313.1|AF152313 Homo sapiens protocadherin alpha 5 (PCDH-alpha5) mRNA, complete cds
          Length = 5218

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 567 attgatcaacaactgaactgtac 589
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668

>gb|AF152483.1|AF152483 Homo sapiens protocadherin alpha 5 short form protein (PCDH-alpha5)
           variable region sequence, complete cds
          Length = 2451

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                  
Query: 567 attgatcaacaactgaactgtac 589
           |||||||||||||||||||||||
Sbjct: 690 attgatcaacaactgaactgtac 668

>emb|AL391724.7| Human DNA sequence from clone RP11-350A18 on chromosome 13 Contains a
              novel gene, complete sequence
          Length = 141628

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 188    acaaaagatgaacacatgcatc 209
              ||||||||||||||||||||||
Sbjct: 108072 acaaaagatgaacacatgcatc 108093

>gb|CP000099.1| Methanosarcina barkeri str. fusaro chromosome 1, complete sequence
          Length = 4837408

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 206     catcatctgctgctgggttcc 226
               |||||||||||||||||||||
Sbjct: 2205159 catcatctgctgctgggttcc 2205179

>gb|AC132249.3| Mus musculus BAC clone RP24-434O21 from chromosome 6, complete sequence
          Length = 180332

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 19     tggagcaaaagaattaatatg 39
              |||||||||||||||||||||
Sbjct: 154796 tggagcaaaagaattaatatg 154776

>gb|AC093714.2| Homo sapiens BAC clone RP11-458K10 from 7, complete sequence
          Length = 142751

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 19   tggagcaaaagaattaatatg 39
            |||||||||||||||||||||
Sbjct: 5899 tggagcaaaagaattaatatg 5879

>emb|AL109923.29|HSDJ468O1 Human DNA sequence from clone RP3-468O1 on chromosome 20 Contains the
             3' end of the ITCH gene for itchy homolog E3 ubiquitin
             protein ligase (mouse), a ferredoxin 1 (FDX1) pseudogene,
             the 5' end of the DNCL2A gene for cytoplasmic dynein light
             polypeptide 2A, two novel genes and two CpG islands,
             complete sequence
          Length = 97832

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 436   tctgtcgaaaagaaatgagaaatccaggc 464
             |||||| ||||||||| ||||||||||||
Sbjct: 10516 tctgtctaaaagaaataagaaatccaggc 10544

>emb|AL034548.25|HS1103G7 Human DNA sequence from clone RP5-1103G7 on chromosome 20p12.2-13
             Contains the C20orf96 gene, the C20orf99 gene, a novel
             gene, the SOX12 gene for SRY (sex-determining region
             Y)-box 12, the C20orf98 gene for chromosome 20 open
             reading frame 98 (similar to mouse VMP, FLJ23329), the
             C20orf97 gene for a novel kinase domain-containing protein
             similar to phosphoprotein C8FW and rat NIPK, the gene for
             a novel defensin protein (DEFB32, UNQ827, KFLL827) and
             five CpG islands, complete sequence
          Length = 153170

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 547   agcagacttgaggacattatattga 571
             |||||||||||||||| ||||||||
Sbjct: 94384 agcagacttgaggacaatatattga 94360

>gb|AC009345.7|AC009345 Drosophila melanogaster, chromosome 3R, region 98C-98C, BAC clone
             BACR28F20, complete sequence
          Length = 158895

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 397   gcaaaaaaccacaacgttgca 417
             |||||||||||||||||||||
Sbjct: 69929 gcaaaaaaccacaacgttgca 69949

>gb|AC154024.2| Mus musculus 6 BAC RP24-137K15 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 173257

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 19    tggagcaaaagaattaatatg 39
             |||||||||||||||||||||
Sbjct: 21285 tggagcaaaagaattaatatg 21265

>gb|AE003764.3| Drosophila melanogaster chromosome 3R, section 102 of 118 of the complete
              sequence
          Length = 231455

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 397    gcaaaaaaccacaacgttgca 417
              |||||||||||||||||||||
Sbjct: 180218 gcaaaaaaccacaacgttgca 180238

>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 206    catcatctgctgctgggttcc 226
              |||||||||||||||||||||
Sbjct: 410025 catcatctgctgctgggttcc 410045

>gb|BC039665.1| Homo sapiens, clone IMAGE:5163213, mRNA
          Length = 1287

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 19  tggagcaaaagaattaatatg 39
           |||||||||||||||||||||
Sbjct: 612 tggagcaaaagaattaatatg 632


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,202,726
Number of Sequences: 3902068
Number of extensions: 7202726
Number of successful extensions: 133586
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133414
Number of HSP's gapped (non-prelim): 172
length of query: 733
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 710
effective length of database: 17,143,297,704
effective search space: 12171741369840
effective search space used: 12171741369840
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)