ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal2k06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ENTK_MOUSE (P97435) Enteropeptidase (EC 3.4.21.9) (Enterokinase)... 32 0.66
2ATCU_VIBCH (Q9KPZ7) Copper-transporting P-type ATPase (EC 3.6.3.4) 31 1.9
3SMC5_SCHPO (O13710) Structural maintenance of chromosome 5 (DNA ... 30 3.3
4SYL_BURMA (Q62H20) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 30 3.3
5Y290_HAEIN (P77868) Probable cation-transporting ATPase HI0290 (... 29 7.3
6TETX_CLOTE (P04958) Tetanus toxin precursor (EC 3.4.24.68) (Tent... 28 9.6
7AOCX_BOVIN (Q29437) Copper amine oxidase, liver isozyme precurso... 28 9.6
8SYL_BURPS (Q63QT6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine-... 28 9.6

>ENTK_MOUSE (P97435) Enteropeptidase (EC 3.4.21.9) (Enterokinase) [Contains:|
            Enteropeptidase non-catalytic heavy chain;
            Enteropeptidase catalytic light chain]
          Length = 1069

 Score = 32.3 bits (72), Expect = 0.66
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = -3

Query: 202  ITSLLHLSRSIERNIDQSPVTCTIWKIMGCPCQFGRLLSPLRKNQALALH-DSNLSTVLR 26
            + +L H  RS +R +  + +  + W +    C + R L P R    L LH  SNL++   
Sbjct: 844  VVALYHRDRSTDRLLCGASLVSSDWLVSAAHCVYRRNLDPTRWTAVLGLHMQSNLTSPQV 903

Query: 25   VR 20
            VR
Sbjct: 904  VR 905



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>ATCU_VIBCH (Q9KPZ7) Copper-transporting P-type ATPase (EC 3.6.3.4)|
          Length = 915

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%)
 Frame = -3

Query: 235  QRTVVSS**ACITSLLHLSRSIERNIDQSPVTCTIWKIMGCPC-------QFGRLLSPLR 77
            Q T+++S    + S + LS++  RN+ Q+     I+  +G P         FG LLSP+ 
Sbjct: 825  QMTLLNSSPTSVVSAIELSKATLRNMKQNLFGAFIYNTLGIPIAAGVLYPAFGFLLSPVV 884

Query: 76   KNQALAL 56
               A+AL
Sbjct: 885  AGAAMAL 891



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>SMC5_SCHPO (O13710) Structural maintenance of chromosome 5 (DNA repair protein|
            spr18) (SMC partner of rad18)
          Length = 1065

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
 Frame = -1

Query: 456  EXKIRL*NLRSFISMLREHCRKVQIRELNAGHAPHD----EVPDEVNSLLSEWM 307
            E K++  N+ S++ M +   RK +I EL +  +  D    E+ DE+NS+  +W+
Sbjct: 843  ETKLKFMNVNSYV-MEQYDARKKEIEELESKMSDFDQSVEELQDEMNSIKEDWV 895



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>SYL_BURMA (Q62H20) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 864

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -3

Query: 145 VTCTIWKIMGCPCQFGRLL-SPLRKNQALALHDSNLSTVLRVRSDI 11
           VT  +WK++G   +FG LL +P  K    AL  + +  VL+V   +
Sbjct: 770 VTFELWKVLGYADEFGPLLDAPWPKVDEAALEQAEIELVLQVNGKV 815



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>Y290_HAEIN (P77868) Probable cation-transporting ATPase HI0290 (EC 3.6.3.-)|
          Length = 722

 Score = 28.9 bits (63), Expect = 7.3
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 202 ITSLLHLSRSIERNIDQSPVTCTIWKIMGCPCQFGRLLSPLRKNQALALHD-SNLSTVLR 26
           +   L ++R+  +NI Q+     I+ I+G P      LSP+    A+AL   S L   LR
Sbjct: 657 LVDALFIARATLKNIKQNLFFALIYNILGIPLAAFGFLSPIIAGAAMALSSISVLMNALR 716

Query: 25  VR 20
           ++
Sbjct: 717 LK 718



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>TETX_CLOTE (P04958) Tetanus toxin precursor (EC 3.4.24.68) (Tentoxylysin)|
            [Contains: Tetanus toxin light chain (Tetanus toxin chain
            L); Tetanus toxin heavy chain (Tetanus toxin chain H)]
          Length = 1314

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
 Frame = +3

Query: 39   ERLLSWSANAWFFL---NGERRRPN*QGHPMIFQMVQVTGDWSIFR----SMDLDKCNND 197
            ++  ++ AN W F+   N      N   + ++    ++TG  +I      ++ LD+CNN+
Sbjct: 1020 DKFNAYLANKWVFITITNDRLSSANLYINGVLMGSAEITGLGAIREDNNITLKLDRCNNN 1079

Query: 198  VMHAHHDETTVRCRGRRPSKL 260
              +   D+  + C+   P ++
Sbjct: 1080 NQYVSIDKFRIFCKALNPKEI 1100



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>AOCX_BOVIN (Q29437) Copper amine oxidase, liver isozyme precursor (EC 1.4.3.6)|
           (Amine oxidase [copper-containing]) (Serum amine
           oxidase) (SAO)
          Length = 762

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = +3

Query: 213 HDETTVRCRGRRPSKLPWTSPKLA*V-QSCSFSSIQTVRSSLHQEL 347
           H     RC  R PS  PWT P  + +    S   + TV S L Q+L
Sbjct: 33  HPSLPPRCPSRSPSDQPWTHPDQSQLFADLSREELTTVMSFLTQQL 78



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>SYL_BURPS (Q63QT6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)|
           (LeuRS)
          Length = 864

 Score = 28.5 bits (62), Expect = 9.6
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -3

Query: 145 VTCTIWKIMGCPCQFGRLL-SPLRKNQALALHDSNLSTVLRVRSDI 11
           VT  +WK +G   +FG LL +P  K    AL  + +  VL+V   +
Sbjct: 770 VTFELWKALGYADEFGPLLDAPWPKVDEAALEQAEIELVLQVNGKV 815


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,205,593
Number of Sequences: 219361
Number of extensions: 1371764
Number of successful extensions: 3537
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3534
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3246866728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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