ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal2k05 |
|---|---|
| Clone Library Name | barley_pub |
>SYL_BURMA (Q62H20) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 864 Score = 34.7 bits (78), Expect = 0.31 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = -1 Query: 288 VTCTIWKIMGCPCQFGRLL-SPLRKNQALALHDSNLSTVLRVRSDIMSVIRVTHD 127 VT +WK++G +FG LL +P K AL + + VL+V + ++V D Sbjct: 770 VTFELWKVLGYADEFGPLLDAPWPKVDEAALEQAEIELVLQVNGKVRGALKVAKD 824
>ENTK_MOUSE (P97435) Enteropeptidase (EC 3.4.21.9) (Enterokinase) [Contains:| Enteropeptidase non-catalytic heavy chain; Enteropeptidase catalytic light chain] Length = 1069 Score = 33.5 bits (75), Expect = 0.68 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = -1 Query: 345 ITSLLHLSRSIERNIDQSPVTCTIWKIMGCPCQFGRLLSPLRKNQALALH-DSNLSTVLR 169 + +L H RS +R + + + + W + C + R L P R L LH SNL++ Sbjct: 844 VVALYHRDRSTDRLLCGASLVSSDWLVSAAHCVYRRNLDPTRWTAVLGLHMQSNLTSPQV 903 Query: 168 VRSDIMSVIRVTH 130 VR + ++ H Sbjct: 904 VRRVVDQIVINPH 916
>SYL_BURPS (Q63QT6) Leucyl-tRNA synthetase (EC 6.1.1.4) (Leucine--tRNA ligase)| (LeuRS) Length = 864 Score = 33.1 bits (74), Expect = 0.89 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Frame = -1 Query: 288 VTCTIWKIMGCPCQFGRLL-SPLRKNQALALHDSNLSTVLRVRSDIMSVIRVTHD 127 VT +WK +G +FG LL +P K AL + + VL+V + ++V D Sbjct: 770 VTFELWKALGYADEFGPLLDAPWPKVDEAALEQAEIELVLQVNGKVRGALKVAKD 824
>AGAL1_PEDPE (P43467) Alpha-galactosidase 1 (EC 3.2.1.22) (Melibiase)| Length = 733 Score = 32.0 bits (71), Expect = 2.0 Identities = 22/105 (20%), Positives = 50/105 (47%) Frame = -2 Query: 671 FNFNLSIPLNFLFDSFGGNILVIQGMKDPLVKSESFISMLREHCRKVQIRELNAGHAPHD 492 +NFN + F + +L++ K S+++ ++RE + + + + Sbjct: 280 YNFNWQLKAGATFQT--PEVLMVYTNKGLNAMSQAYHHLIRERVVRSEFK--------NQ 329 Query: 491 EVPDEVNSLLSEWMKTNKTELKPALEKSKAI*KGVFLGNGPWFHH 357 E P VN+ + + N+ +LKP ++++K + +F+ + WF H Sbjct: 330 ERPIVVNNWEATFFDFNEAKLKPIVDEAKQLGIEMFVLDDGWFGH 374
>ATCU_VIBCH (Q9KPZ7) Copper-transporting P-type ATPase (EC 3.6.3.4)| Length = 915 Score = 30.8 bits (68), Expect = 4.4 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 7/67 (10%) Frame = -1 Query: 378 QRTVVSS**ACITSLLHLSRSIERNIDQSPVTCTIWKIMGCPC-------QFGRLLSPLR 220 Q T+++S + S + LS++ RN+ Q+ I+ +G P FG LLSP+ Sbjct: 825 QMTLLNSSPTSVVSAIELSKATLRNMKQNLFGAFIYNTLGIPIAAGVLYPAFGFLLSPVV 884 Query: 219 KNQALAL 199 A+AL Sbjct: 885 AGAAMAL 891
>SYFB_ARATH (Q9SGE9) Probable phenylalanyl-tRNA synthetase beta chain (EC| 6.1.1.20) (Phenylalanine--tRNA ligase beta chain) (PheRS) Length = 598 Score = 30.4 bits (67), Expect = 5.8 Identities = 12/42 (28%), Positives = 25/42 (59%) Frame = -2 Query: 725 EIIRASYDPGATTVIESIFNFNLSIPLNFLFDSFGGNILVIQ 600 E + +YD G + + + +++ +PL+F+ DS G ++ V Q Sbjct: 286 EPVEVTYDDGKSYIYPDLAVYDMEVPLSFITDSIGVSLKVEQ 327
>K6PF_STRP8 (Q8P0S6) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 337 Score = 30.0 bits (66), Expect = 7.6 Identities = 18/73 (24%), Positives = 35/73 (47%) Frame = -2 Query: 647 LNFLFDSFGGNILVIQGMKDPLVKSESFISMLREHCRKVQIRELNAGHAPHDEVPDEVNS 468 + + F+ G N +I + + ++ E+F L+E K +R N GH P + Sbjct: 205 IQYDFEHKGKNHHIIV-LAEGVMSGEAFAQKLKEAGDKSDLRVTNLGHILRGGSPTARDR 263 Query: 467 LLSEWMKTNKTEL 429 +++ WM ++ EL Sbjct: 264 VIASWMGSHAVEL 276
>K6PF_STRP6 (Q5XBV2) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 337 Score = 30.0 bits (66), Expect = 7.6 Identities = 18/73 (24%), Positives = 35/73 (47%) Frame = -2 Query: 647 LNFLFDSFGGNILVIQGMKDPLVKSESFISMLREHCRKVQIRELNAGHAPHDEVPDEVNS 468 + + F+ G N +I + + ++ E+F L+E K +R N GH P + Sbjct: 205 IQYDFEHKGKNHHIIV-LAEGVMSGEAFAQKLKEAGDKSDLRVTNLGHILRGGSPTARDR 263 Query: 467 LLSEWMKTNKTEL 429 +++ WM ++ EL Sbjct: 264 VIASWMGSHAVEL 276
>K6PF_STRP3 (Q8K7A2) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 337 Score = 30.0 bits (66), Expect = 7.6 Identities = 18/73 (24%), Positives = 35/73 (47%) Frame = -2 Query: 647 LNFLFDSFGGNILVIQGMKDPLVKSESFISMLREHCRKVQIRELNAGHAPHDEVPDEVNS 468 + + F+ G N +I + + ++ E+F L+E K +R N GH P + Sbjct: 205 IQYDFEHKGKNHHIIV-LAEGVMSGEAFAQKLKEAGDKSDLRVTNLGHILRGGSPTARDR 263 Query: 467 LLSEWMKTNKTEL 429 +++ WM ++ EL Sbjct: 264 VIASWMGSHAVEL 276
>K6PF_STRP1 (Q99ZD0) 6-phosphofructokinase (EC 2.7.1.11) (Phosphofructokinase)| (Phosphohexokinase) Length = 337 Score = 30.0 bits (66), Expect = 7.6 Identities = 18/73 (24%), Positives = 35/73 (47%) Frame = -2 Query: 647 LNFLFDSFGGNILVIQGMKDPLVKSESFISMLREHCRKVQIRELNAGHAPHDEVPDEVNS 468 + + F+ G N +I + + ++ E+F L+E K +R N GH P + Sbjct: 205 IQYDFEHKGKNHHIIV-LAEGVMSGEAFAQKLKEAGDKSDLRVTNLGHILRGGSPTARDR 263 Query: 467 LLSEWMKTNKTEL 429 +++ WM ++ EL Sbjct: 264 VIASWMGSHAVEL 276 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 100,236,714 Number of Sequences: 219361 Number of extensions: 2007147 Number of successful extensions: 5043 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4868 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5040 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7479594804 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
